Wall clock time and date at job start Mon Mar 30 2020 03:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86791 * 120.00158 * 2 1 4 4 H 1.48501 * 109.47367 * 239.99872 * 3 2 1 5 5 H 1.48499 * 109.47198 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47214 * 120.00032 * 3 2 1 7 7 C 1.37878 * 119.99636 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00286 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47203 * 174.72236 * 9 7 2 11 11 C 1.46898 * 110.99968 * 162.29896 * 10 9 7 12 12 C 1.53005 * 109.46971 * 190.00111 * 11 10 9 13 13 C 1.53003 * 109.46855 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.47267 * 55.00408 * 13 12 11 15 15 O 1.42898 * 109.47525 * 294.99816 * 13 12 11 16 16 C 1.52999 * 109.46991 * 174.99810 * 13 12 11 17 17 N 1.46895 * 109.47340 * 185.00137 * 16 13 12 18 18 C 1.46902 * 111.00220 * 286.24767 * 10 9 7 19 19 C 1.52999 * 117.50040 * 142.03346 * 18 10 9 20 20 C 1.52994 * 60.00247 * 252.51661 * 19 18 10 21 21 H 0.97007 * 120.00059 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47360 * 294.72674 * 9 7 2 23 23 H 1.09001 * 109.46969 * 54.72627 * 9 7 2 24 24 H 1.09000 * 109.46823 * 309.99607 * 11 10 9 25 25 H 1.08997 * 109.47539 * 69.99713 * 11 10 9 26 26 H 1.08990 * 109.47026 * 299.99424 * 12 11 10 27 27 H 1.09001 * 109.47146 * 59.99941 * 12 11 10 28 28 H 0.96692 * 114.00085 * 300.00639 * 15 13 12 29 29 H 1.09000 * 109.47477 * 305.00537 * 16 13 12 30 30 H 1.09003 * 109.47140 * 64.99869 * 16 13 12 31 31 H 1.00904 * 111.00324 * 56.04935 * 17 16 13 32 32 H 1.00902 * 111.00524 * 180.02562 * 17 16 13 33 33 H 1.08998 * 115.55257 * 287.74878 * 18 10 9 34 34 H 1.08997 * 117.49746 * 0.02562 * 19 18 10 35 35 H 1.08999 * 117.49812 * 145.01767 * 19 18 10 36 36 H 1.09003 * 117.49831 * 252.51359 * 20 19 18 37 37 H 1.09000 * 117.52267 * 107.48507 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2005 -3.6128 -0.1262 11 6 1.5823 -4.8809 0.2834 12 6 2.6575 -5.9654 0.3776 13 6 2.0138 -7.2860 0.8049 14 1 1.2046 -7.5347 0.1182 15 8 1.4919 -7.1552 2.1287 16 6 3.0647 -8.3977 0.7785 17 7 2.4224 -9.6857 1.0721 18 6 2.7276 -3.7021 -1.4945 19 6 4.2013 -4.0782 -1.6607 20 6 3.7428 -2.6438 -1.9308 21 1 -0.4850 0.8401 0.0004 22 1 0.6966 -2.5987 0.9338 23 1 0.5556 -2.5173 -0.8387 24 1 1.1065 -4.7556 1.2561 25 1 0.8335 -5.1745 -0.4522 26 1 3.1333 -6.0907 -0.5950 27 1 3.4063 -5.6718 1.1133 28 1 2.1578 -6.9340 2.7939 29 1 3.5261 -8.4382 -0.2081 30 1 3.8287 -8.1932 1.5286 31 1 1.6668 -9.8681 0.4287 32 1 3.0962 -10.4367 1.0610 33 1 2.0269 -4.0672 -2.2454 34 1 4.7796 -4.2598 -0.7548 35 1 4.4704 -4.6911 -2.5210 36 1 3.7101 -2.3129 -2.9689 37 1 4.0192 -1.8811 -1.2029 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389251684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:23 Heat of formation + Delta-G solvation = -51.988291 kcal Electronic energy + Delta-G solvation = -16288.519368 eV Core-core repulsion = 13679.269869 eV Total energy + Delta-G solvation = -2609.249499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.75382 -38.54103 -35.39316 -34.70974 -34.57839 -32.12915 -29.05236 -26.86600 -24.18120 -23.40866 -23.08690 -22.23500 -20.98575 -18.56950 -17.57879 -16.96099 -16.71339 -16.56613 -16.29689 -15.95786 -15.26598 -15.07193 -14.53522 -14.26029 -13.94889 -13.65010 -13.36139 -13.11602 -12.91218 -12.59421 -12.51343 -12.30645 -11.99783 -11.81519 -11.70361 -11.24000 -10.98999 -10.83405 -10.60847 -10.52928 -9.53652 -9.05696 -8.15592 -6.24142 1.41555 1.44815 1.52179 2.41960 3.01477 3.15173 3.17862 3.50730 3.79946 3.92657 4.09341 4.18951 4.27535 4.31515 4.40051 4.46096 4.62810 4.73271 4.80125 4.87965 4.91528 4.93927 5.10833 5.18440 5.25225 5.32529 5.39500 5.48444 5.77759 6.10412 6.22032 6.41973 6.60621 6.65661 6.91641 6.95993 7.44187 8.95499 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.039138 B = 0.005841 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.242877 B = 4792.239847 C = 5247.603398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.003 4.003 3 Si 0.965 3.035 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.268 1.268 7 C -0.507 4.507 8 H 0.073 0.927 9 C 0.209 3.791 10 N -0.513 5.513 11 C 0.066 3.934 12 C -0.125 4.125 13 C 0.114 3.886 14 H 0.083 0.917 15 O -0.571 6.571 16 C 0.039 3.961 17 N -0.855 5.855 18 C -0.001 4.001 19 C -0.139 4.139 20 C -0.171 4.171 21 H 0.262 0.738 22 H -0.006 1.006 23 H -0.040 1.040 24 H 0.054 0.946 25 H 0.010 0.990 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.383 0.617 29 H 0.047 0.953 30 H 0.081 0.919 31 H 0.344 0.656 32 H 0.350 0.650 33 H 0.063 0.937 34 H 0.098 0.902 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.327 -15.127 -2.003 17.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.193 1.193 7 C -0.545 4.545 8 H 0.091 0.909 9 C 0.083 3.917 10 N -0.238 5.238 11 C -0.063 4.063 12 C -0.164 4.164 13 C 0.054 3.946 14 H 0.101 0.899 15 O -0.378 6.378 16 C -0.093 4.093 17 N -0.386 5.386 18 C -0.110 4.110 19 C -0.176 4.176 20 C -0.208 4.208 21 H 0.070 0.930 22 H 0.012 0.988 23 H -0.023 1.023 24 H 0.073 0.927 25 H 0.028 0.972 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.232 0.768 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.156 0.844 32 H 0.164 0.836 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.133 0.867 36 H 0.111 0.889 37 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.838 -14.739 -1.279 17.234 hybrid contribution -0.257 0.887 -1.212 1.524 sum 8.581 -13.852 -2.491 16.484 Atomic orbital electron populations 1.70106 1.07870 1.27683 1.52566 1.25920 0.95634 1.03152 0.95252 0.85491 0.78163 0.78130 0.79200 1.18959 1.21272 1.19329 1.21531 0.93873 0.90400 1.48721 0.90882 1.19354 0.89869 0.89515 0.92932 1.61881 1.37144 1.03255 1.21472 1.21962 0.95694 0.89880 0.98715 1.22115 0.97717 0.93302 1.03247 1.21876 0.95826 0.92471 0.84391 0.89884 1.86549 1.40117 1.93217 1.17905 1.22402 0.96237 0.89978 1.00634 1.58565 1.15666 1.04136 1.60265 1.22154 0.92315 1.06455 0.90086 1.23079 0.94180 0.97133 1.03223 1.23026 1.03132 0.93293 1.01366 0.92969 0.98766 1.02264 0.92736 0.97192 0.89901 0.90741 0.76843 0.93455 0.90093 0.84366 0.83600 0.91920 0.88373 0.86683 0.88950 0.89400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.07 13.29 21.45 0.28 -57.78 16 2 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 3 Si 0.97 44.67 29.54 68.60 2.03 46.70 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.51 -28.78 8.04 25.60 0.21 -28.58 16 8 H 0.07 4.00 5.49 -2.91 -0.02 3.98 16 9 C 0.21 11.54 4.75 85.56 0.41 11.94 16 10 N -0.51 -22.40 4.58 -875.52 -4.01 -26.40 16 11 C 0.07 2.44 4.84 86.31 0.42 2.86 16 12 C -0.13 -3.30 4.64 30.60 0.14 -3.16 16 13 C 0.11 2.64 3.14 30.59 0.10 2.74 16 14 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 15 O -0.57 -15.36 12.82 -148.98 -1.91 -17.27 16 16 C 0.04 0.67 6.42 86.30 0.55 1.22 16 17 N -0.86 -14.29 9.57 -186.73 -1.79 -16.08 16 18 C 0.00 -0.04 4.27 44.92 0.19 0.15 16 19 C -0.14 -3.98 8.92 30.59 0.27 -3.71 16 20 C -0.17 -6.26 9.39 30.59 0.29 -5.97 16 21 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 22 H -0.01 -0.34 7.77 -2.39 -0.02 -0.36 16 23 H -0.04 -2.46 8.03 -2.39 -0.02 -2.48 16 24 H 0.05 2.21 7.52 -2.39 -0.02 2.19 16 25 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 26 H 0.08 2.00 6.38 -2.39 -0.02 1.99 16 27 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.38 8.01 9.04 -74.06 -0.67 7.34 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.34 5.34 8.99 -89.69 -0.81 4.53 16 32 H 0.35 4.32 9.08 -89.69 -0.81 3.51 16 33 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 35 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.09 3.69 5.63 -2.39 -0.01 3.68 16 Total: -1.00 -68.21 300.51 -3.57 -71.78 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -1.22 Total: 21.24 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 3.04 Total: -22.19 kcal Atomic # 7 Polarization: -94.76 SS G_CDS: -5.51 Total: -100.27 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -1.91 Total: -17.27 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -68.21 -3.57 -71.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389251684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.795 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds