Wall clock time and date at job start Mon Mar 30 2020 02:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46900 * 111.00377 * 2 1 4 4 C 1.50695 * 110.45745 * 302.14237 * 3 2 1 5 5 O 1.21289 * 120.00052 * 143.38877 * 4 3 2 6 6 N 1.34776 * 120.00008 * 323.38360 * 4 3 2 7 7 C 1.46500 * 120.00302 * 175.18417 * 6 4 3 8 8 C 1.50689 * 109.47442 * 180.02562 * 7 6 4 9 9 H 1.08008 * 119.99959 * 359.97438 * 8 7 6 10 10 C 1.37880 * 120.00290 * 180.02562 * 8 7 6 11 11 N 1.31510 * 120.00079 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00171 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.47153 * 59.99816 * 12 10 8 14 14 H 1.48500 * 109.47359 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.47252 * 299.99955 * 12 10 8 16 16 C 1.54506 * 110.51715 * 179.52830 * 3 2 1 17 17 C 1.54478 * 104.06743 * 241.36076 * 16 3 2 18 18 O 1.44424 * 104.79963 * 336.02108 * 17 16 3 19 19 C 1.44639 * 105.36977 * 40.43633 * 18 17 16 20 20 H 1.09003 * 109.47280 * 175.25176 * 1 2 3 21 21 H 1.09000 * 109.46974 * 295.25557 * 1 2 3 22 22 H 1.08998 * 109.46996 * 55.25387 * 1 2 3 23 23 H 1.00894 * 111.00085 * 123.95797 * 2 1 3 24 24 H 0.97003 * 120.00071 * 355.19307 * 6 4 3 25 25 H 1.09002 * 109.46876 * 300.00645 * 7 6 4 26 26 H 1.09002 * 109.46930 * 59.99711 * 7 6 4 27 27 H 0.96996 * 120.00803 * 180.02562 * 11 10 8 28 28 H 1.09004 * 110.50854 * 0.02562 * 16 3 2 29 29 H 1.08999 * 110.50847 * 122.57171 * 16 3 2 30 30 H 1.08994 * 110.37201 * 94.84999 * 17 16 3 31 31 H 1.08996 * 110.36812 * 217.18846 * 17 16 3 32 32 H 1.09009 * 110.50345 * 200.81292 * 19 18 17 33 33 H 1.08994 * 110.34230 * 78.40945 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.4830 2.1323 -1.1955 5 8 1.2111 3.3100 -1.0938 6 7 1.3269 1.5043 -2.3778 7 6 0.7302 2.2148 -3.5115 8 6 0.6691 1.2960 -4.7043 9 1 1.0383 0.2840 -4.6259 10 6 0.1429 1.7475 -5.8961 11 7 -0.3061 2.9798 -5.9918 12 14 0.0679 0.6087 -7.3749 13 1 -0.7605 -0.5786 -7.0439 14 1 -0.5371 1.3288 -8.5241 15 1 1.4410 0.1702 -7.7323 16 6 3.5405 1.3583 0.0119 17 6 3.9119 2.0772 1.3278 18 8 2.7686 2.9060 1.6308 19 6 1.6131 2.0979 1.3086 20 1 -0.3634 -1.0242 -0.0851 21 1 -0.3633 0.4385 0.9294 22 1 -0.3633 0.5857 -0.8444 23 1 1.8306 -0.5261 0.7813 24 1 1.6095 0.5818 -2.4780 25 1 -0.2776 2.5364 -3.2490 26 1 1.3379 3.0865 -3.7545 27 1 -0.6766 3.2974 -6.8301 28 1 3.9136 0.3341 0.0173 29 1 3.9336 1.9021 -0.8470 30 1 4.0756 1.3508 2.1238 31 1 4.8001 2.6928 1.1861 32 1 0.7381 2.7286 1.1508 33 1 1.4229 1.3753 2.1022 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389272761.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:54 Heat of formation + Delta-G solvation = -106.329533 kcal Electronic energy + Delta-G solvation = -16498.156322 eV Core-core repulsion = 13750.717315 eV Total energy + Delta-G solvation = -2747.439007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.76351 -39.35456 -36.66236 -36.10090 -34.25786 -32.15458 -29.79760 -29.21960 -26.03206 -25.49327 -23.67658 -22.98532 -20.86088 -18.90873 -17.95619 -17.83684 -17.02500 -16.65254 -16.49271 -16.20647 -15.65994 -15.56975 -14.78589 -14.37815 -14.14424 -14.03756 -13.83024 -13.47037 -12.97582 -12.74947 -12.73048 -12.68482 -12.56824 -12.24519 -12.00970 -11.53300 -10.87512 -10.80622 -10.78928 -9.82722 -9.60190 -8.29923 -6.47053 1.42563 1.46971 1.55294 1.60815 2.28459 2.49112 2.71749 3.04588 3.23064 3.52923 3.56035 3.84970 4.09507 4.19999 4.42654 4.45499 4.52723 4.62001 4.77567 4.81291 4.98547 5.03030 5.07905 5.19744 5.47264 5.53052 5.69195 5.81737 5.83170 6.39505 6.63383 6.88165 7.21687 7.43867 8.82193 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.042935 B = 0.006483 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.999092 B = 4317.841066 C = 4480.730056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.660 5.660 3 C 0.072 3.928 4 C 0.511 3.489 5 O -0.600 6.600 6 N -0.690 5.690 7 C 0.267 3.733 8 C -0.555 4.555 9 H 0.083 0.917 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.986 3.014 13 H -0.261 1.261 14 H -0.285 1.285 15 H -0.262 1.262 16 C -0.136 4.136 17 C 0.041 3.959 18 O -0.396 6.396 19 C 0.040 3.960 20 H 0.100 0.900 21 H 0.037 0.963 22 H 0.036 0.964 23 H 0.370 0.630 24 H 0.411 0.589 25 H -0.014 1.014 26 H -0.016 1.016 27 H 0.269 0.731 28 H 0.130 0.870 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.582 -10.781 13.963 18.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.295 5.295 3 C -0.023 4.023 4 C 0.296 3.704 5 O -0.482 6.482 6 N -0.339 5.339 7 C 0.144 3.856 8 C -0.593 4.593 9 H 0.101 0.899 10 C -0.195 4.195 11 N -0.571 5.571 12 Si 0.809 3.191 13 H -0.185 1.185 14 H -0.210 1.210 15 H -0.187 1.187 16 C -0.174 4.174 17 C -0.035 4.035 18 O -0.315 6.315 19 C -0.039 4.039 20 H 0.119 0.881 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.193 0.807 24 H 0.248 0.752 25 H 0.004 0.996 26 H 0.002 0.998 27 H 0.078 0.922 28 H 0.149 0.851 29 H 0.080 0.920 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.088 0.912 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.343 -9.692 13.292 17.631 hybrid contribution -0.534 0.056 -0.299 0.615 sum 5.809 -9.636 12.993 17.187 Atomic orbital electron populations 1.22348 0.87041 1.03783 1.00107 1.60406 1.08573 1.09355 1.51206 1.22470 0.97758 0.89918 0.92160 1.20823 0.77325 0.86887 0.85320 1.90669 1.53538 1.18300 1.85671 1.46146 1.60392 1.16814 1.10504 1.18546 0.90939 0.92167 0.83933 1.21553 1.42626 0.99442 0.95685 0.89943 1.26081 0.93963 0.96940 1.02539 1.70132 1.40918 1.18110 1.27892 0.85193 0.79133 0.78130 0.76680 1.18502 1.21025 1.18655 1.23014 0.90194 1.04728 0.99448 1.23726 0.89681 0.94682 0.95417 1.89178 1.15890 1.39530 1.86860 1.24036 0.90211 0.95052 0.94634 0.88140 0.94421 0.94528 0.80734 0.75189 0.99572 0.99841 0.92209 0.85149 0.91985 0.88323 0.87972 0.91223 0.88193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.13 127.69 1.29 1.68 16 2 N -0.66 -14.20 5.81 -491.67 -2.86 -17.06 16 3 C 0.07 2.06 0.86 3.80 0.00 2.06 16 4 C 0.51 21.73 5.22 87.66 0.46 22.19 16 5 O -0.60 -31.78 15.85 -3.06 -0.05 -31.83 16 6 N -0.69 -30.78 4.71 -466.80 -2.20 -32.98 16 7 C 0.27 15.15 5.43 85.63 0.47 15.61 16 8 C -0.56 -30.89 9.28 25.60 0.24 -30.65 16 9 H 0.08 4.17 7.60 -2.91 -0.02 4.15 16 10 C 0.00 0.24 5.46 84.66 0.46 0.71 16 11 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 12 Si 0.99 42.71 29.54 68.60 2.03 44.74 16 13 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 14 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 16 C -0.14 -3.11 6.46 31.61 0.20 -2.90 16 17 C 0.04 0.84 7.64 72.48 0.55 1.40 16 18 O -0.40 -12.06 11.65 -148.98 -1.74 -13.80 16 19 C 0.04 1.12 5.49 72.49 0.40 1.51 16 20 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 21 H 0.04 0.78 7.39 -2.39 -0.02 0.77 16 22 H 0.04 1.19 6.43 -2.39 -0.02 1.17 16 23 H 0.37 5.05 8.75 -89.70 -0.78 4.26 16 24 H 0.41 16.05 7.87 -92.71 -0.73 15.32 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 27 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 28 H 0.13 2.02 7.96 -2.39 -0.02 2.00 16 29 H 0.06 1.74 7.73 -2.39 -0.02 1.72 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 2.39 7.31 -2.38 -0.02 2.38 16 33 H 0.10 1.95 7.92 -2.39 -0.02 1.93 16 Total: -1.00 -75.39 276.12 -0.84 -76.23 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.39 Total: 19.87 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 4.08 Total: 11.61 kcal Atomic # 7 Polarization: -102.05 SS G_CDS: -4.77 Total: -106.82 kcal Atomic # 8 Polarization: -43.84 SS G_CDS: -1.78 Total: -45.63 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -75.39 -0.84 -76.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389272761.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.098 kcal (2) G-P(sol) polarization free energy of solvation -75.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds