Wall clock time and date at job start Mon Mar 30 2020 03:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47435 * 2 1 4 4 H 1.08999 * 109.47220 * 55.31376 * 3 2 1 5 5 O 1.42900 * 109.46976 * 295.31543 * 3 2 1 6 6 C 1.42904 * 113.99686 * 115.65997 * 5 3 2 7 7 C 1.52999 * 109.47285 * 175.31429 * 3 2 1 8 8 H 1.09001 * 109.48031 * 59.98130 * 7 3 2 9 9 C 1.53091 * 109.48146 * 179.97438 * 7 3 2 10 10 C 1.53172 * 109.16531 * 177.59457 * 9 7 3 11 11 C 1.53179 * 109.03553 * 303.02178 * 10 9 7 12 12 C 1.53092 * 109.16606 * 56.97727 * 11 10 9 13 13 H 1.08999 * 109.48457 * 182.39525 * 12 11 10 14 14 C 1.50707 * 109.48026 * 62.37394 * 12 11 10 15 15 H 1.08004 * 119.99223 * 0.02562 * 14 12 11 16 16 C 1.37870 * 120.00329 * 180.02562 * 14 12 11 17 17 N 1.31515 * 120.00192 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00163 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47072 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47054 * 119.99544 * 18 16 14 21 21 H 1.48499 * 109.47091 * 240.00092 * 18 16 14 22 22 O 1.42899 * 109.48289 * 299.94319 * 7 3 2 23 23 H 1.08996 * 109.46615 * 294.06240 * 1 2 3 24 24 H 1.08997 * 109.47221 * 54.06211 * 1 2 3 25 25 H 1.09004 * 109.47151 * 174.06263 * 1 2 3 26 26 H 1.09001 * 109.46736 * 239.99694 * 2 1 3 27 27 H 1.09003 * 109.47005 * 120.00675 * 2 1 3 28 28 H 1.09000 * 109.46757 * 185.33061 * 6 5 3 29 29 H 1.09004 * 109.46988 * 305.32137 * 6 5 3 30 30 H 1.08991 * 109.47562 * 65.32872 * 6 5 3 31 31 H 1.09004 * 109.52433 * 297.50028 * 9 7 3 32 32 H 1.09002 * 109.52119 * 57.68569 * 9 7 3 33 33 H 1.08997 * 109.54434 * 62.88313 * 10 9 7 34 34 H 1.08998 * 109.54777 * 183.06425 * 10 9 7 35 35 H 1.09000 * 109.52348 * 176.88614 * 11 10 9 36 36 H 1.09003 * 109.52460 * 297.07498 * 11 10 9 37 37 H 0.96996 * 120.00033 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6099 1.9799 0.8450 5 8 1.6557 2.0835 -1.2179 6 6 0.7502 3.1746 -1.0397 7 6 3.5655 1.4440 0.1178 8 1 3.9959 0.9062 -0.7270 9 6 4.0762 2.8872 0.1172 10 6 5.5974 2.8824 0.2958 11 6 5.9461 2.1430 1.5912 12 6 5.3632 0.7285 1.5350 13 1 5.5717 0.2118 2.4718 14 6 5.9909 -0.0287 0.3930 15 1 6.7316 0.4504 -0.2300 16 6 5.6196 -1.3328 0.1438 17 7 4.7179 -1.9164 0.9029 18 14 6.3981 -2.2715 -1.2712 19 1 7.3773 -1.3974 -1.9658 20 1 7.0944 -3.4729 -0.7446 21 1 5.3423 -2.6907 -2.2276 22 8 3.9501 0.8041 1.3363 23 1 -0.3632 0.4190 0.9384 24 1 -0.3633 0.6031 -0.8320 25 1 -0.3634 -1.0222 -0.1063 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5140 0.8900 28 1 0.4335 3.5467 -2.0140 29 1 -0.1213 2.8356 -0.4796 30 1 1.2474 3.9734 -0.4897 31 1 3.8222 3.3631 -0.8300 32 1 3.6148 3.4372 0.9375 33 1 6.0623 2.3755 -0.5497 34 1 5.9614 3.9084 0.3508 35 1 7.0293 2.0866 1.6982 36 1 5.5225 2.6778 2.4413 37 1 4.4564 -2.8338 0.7273 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395083068.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:51 Heat of formation + Delta-G solvation = -130.775046 kcal Electronic energy + Delta-G solvation = -17487.444810 eV Core-core repulsion = 14842.486110 eV Total energy + Delta-G solvation = -2644.958700 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43640 -38.69438 -34.69516 -34.39803 -33.71811 -31.90111 -28.68575 -27.38471 -26.29881 -24.38180 -23.13351 -21.77690 -20.72973 -18.49223 -17.52092 -17.10800 -16.62258 -16.16631 -15.65084 -15.43486 -15.12338 -14.93500 -14.50770 -14.27599 -13.76531 -13.51944 -13.28754 -12.95907 -12.83625 -12.60892 -12.44700 -12.30967 -12.16466 -11.97156 -11.73189 -11.60515 -11.46211 -11.22617 -10.77237 -10.48866 -10.20251 -9.58321 -8.06674 -6.25865 1.35790 1.39172 1.48362 2.40713 2.71821 3.20921 3.78157 3.83046 4.14302 4.18535 4.29437 4.35133 4.46992 4.49398 4.58919 4.60955 4.65488 4.80228 4.85773 4.88070 4.97142 5.03114 5.11734 5.22375 5.23061 5.27233 5.33017 5.42950 5.52873 5.59871 5.68422 5.83397 6.19443 6.39300 6.78927 7.16831 7.49884 8.97226 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.022480 B = 0.011499 C = 0.009122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.244669 B = 2434.411052 C = 3068.681025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.121 4.121 3 C 0.112 3.888 4 H 0.070 0.930 5 O -0.396 6.396 6 C 0.023 3.977 7 C 0.098 3.902 8 H 0.025 0.975 9 C -0.132 4.132 10 C -0.106 4.106 11 C -0.136 4.136 12 C 0.208 3.792 13 H 0.029 0.971 14 C -0.561 4.561 15 H 0.052 0.948 16 C 0.035 3.965 17 N -0.886 5.886 18 Si 0.937 3.063 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.284 1.284 22 O -0.386 6.386 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.035 0.965 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.055 0.945 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.837 9.137 -2.236 11.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C 0.054 3.946 4 H 0.088 0.912 5 O -0.316 6.316 6 C -0.073 4.073 7 C 0.039 3.961 8 H 0.044 0.956 9 C -0.170 4.170 10 C -0.143 4.143 11 C -0.173 4.173 12 C 0.152 3.848 13 H 0.046 0.954 14 C -0.599 4.599 15 H 0.070 0.930 16 C -0.168 4.168 17 N -0.524 5.524 18 Si 0.763 3.237 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.211 1.211 22 O -0.306 6.306 23 H 0.080 0.920 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.997 8.853 -2.238 11.504 hybrid contribution 0.747 -0.849 -0.570 1.266 sum -6.251 8.004 -2.808 10.537 Atomic orbital electron populations 1.21699 0.93812 1.02024 1.02014 1.21626 0.97015 0.96024 1.01263 1.21814 0.92876 0.93338 0.86573 0.91157 1.87850 1.65262 1.48324 1.30160 1.23068 0.92299 0.88405 1.03504 1.21692 0.93310 0.92068 0.88980 0.95647 1.22023 0.96419 0.96852 1.01685 1.21413 0.95745 0.99550 0.97601 1.22068 1.00299 0.97421 0.97556 1.19612 0.78761 0.91212 0.95231 0.95363 1.21785 1.24250 0.97965 1.15903 0.92979 1.25653 0.94866 0.98324 0.97930 1.70163 1.30670 1.12633 1.38896 0.85850 0.78611 0.78996 0.80272 1.19203 1.20340 1.21056 1.87759 1.25457 1.79305 1.38036 0.92033 0.91826 0.92496 0.94576 0.92190 0.88067 0.92984 0.93488 0.90878 0.91730 0.93378 0.90769 0.92151 0.92602 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.14 9.80 71.98 0.71 -3.43 16 2 C -0.12 -4.85 5.56 30.59 0.17 -4.68 16 3 C 0.11 4.24 2.04 30.59 0.06 4.30 16 4 H 0.07 2.44 7.61 -2.39 -0.02 2.43 16 5 O -0.40 -13.43 9.18 -148.98 -1.37 -14.80 16 6 C 0.02 0.54 10.45 113.37 1.19 1.73 16 7 C 0.10 4.38 2.16 30.62 0.07 4.45 16 8 H 0.03 1.34 7.09 -2.39 -0.02 1.33 16 9 C -0.13 -4.89 5.23 30.68 0.16 -4.73 16 10 C -0.11 -3.99 5.78 30.71 0.18 -3.81 16 11 C -0.14 -5.65 5.59 30.68 0.17 -5.47 16 12 C 0.21 10.73 3.16 29.88 0.09 10.83 16 13 H 0.03 1.61 8.14 -2.39 -0.02 1.60 16 14 C -0.56 -30.98 6.59 25.60 0.17 -30.81 16 15 H 0.05 2.85 6.87 -2.91 -0.02 2.83 16 16 C 0.04 1.97 5.40 84.65 0.46 2.43 16 17 N -0.89 -52.03 12.84 21.44 0.28 -51.75 16 18 Si 0.94 44.46 29.54 68.60 2.03 46.48 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 21 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 22 O -0.39 -19.75 8.88 -148.98 -1.32 -21.07 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.73 7.00 -2.39 -0.02 1.71 16 25 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.06 2.79 7.55 -2.39 -0.02 2.77 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.05 1.07 7.65 -2.39 -0.02 1.06 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 2.48 7.76 -2.38 -0.02 2.46 16 32 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.05 2.00 6.85 -2.39 -0.02 1.98 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.26 14.47 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -62.49 291.64 4.04 -58.45 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.01 Total: 11.91 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 3.42 Total: -29.21 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.28 Total: -51.75 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -2.69 Total: -35.88 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.48 kcal Total: -62.49 4.04 -58.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395083068.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.327 kcal (2) G-P(sol) polarization free energy of solvation -62.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds