Wall clock time and date at job start Mon Mar 30 2020 03:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99776 * 2 1 4 4 H 1.48500 * 109.47383 * 270.00171 * 3 2 1 5 5 H 1.48497 * 109.47200 * 30.00331 * 3 2 1 6 6 H 1.48501 * 109.47048 * 150.00051 * 3 2 1 7 7 C 1.37874 * 120.00105 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00045 * 0.02562 * 7 2 1 10 10 O 1.42897 * 109.47217 * 179.97438 * 9 7 2 11 11 C 1.42897 * 114.00272 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47485 * 180.02562 * 11 10 9 13 13 N 1.46893 * 109.47283 * 63.82870 * 12 11 10 14 14 C 1.47444 * 111.00263 * 55.66027 * 13 12 11 15 15 C 1.54317 * 107.23642 * 123.25627 * 14 13 12 16 16 C 1.55133 * 103.01860 * 22.28539 * 15 14 13 17 17 C 1.47843 * 111.00204 * 176.49950 * 13 12 11 18 18 H 1.09000 * 110.37577 * 332.58204 * 17 13 12 19 19 C 1.53009 * 110.36995 * 94.80578 * 17 13 12 20 20 N 1.46894 * 109.47095 * 305.00187 * 19 17 13 21 21 H 0.96998 * 119.99847 * 359.97438 * 1 2 3 22 22 H 1.08995 * 109.47394 * 59.99629 * 9 7 2 23 23 H 1.09006 * 109.46969 * 299.99717 * 9 7 2 24 24 H 1.09003 * 109.46856 * 59.99505 * 11 10 9 25 25 H 1.09004 * 109.46948 * 300.00422 * 11 10 9 26 26 H 1.08999 * 109.46767 * 303.83016 * 12 11 10 27 27 H 1.09000 * 109.47290 * 183.83246 * 12 11 10 28 28 H 1.08998 * 109.89024 * 242.67164 * 14 13 12 29 29 H 1.09010 * 109.88661 * 3.84740 * 14 13 12 30 30 H 1.08995 * 110.70317 * 140.67271 * 15 14 13 31 31 H 1.09005 * 110.70312 * 263.72931 * 15 14 13 32 32 H 1.09004 * 110.99264 * 206.25799 * 16 15 14 33 33 H 1.09003 * 110.99324 * 82.43393 * 16 15 14 34 34 H 1.09005 * 109.46463 * 185.00058 * 19 17 13 35 35 H 1.08999 * 109.46802 * 65.00641 * 19 17 13 36 36 H 1.00896 * 111.00442 * 56.04939 * 20 19 17 37 37 H 1.00907 * 110.99657 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 8 2.1797 -3.5852 -0.0027 11 6 1.5652 -4.8753 -0.0032 12 6 2.6482 -5.9561 -0.0036 13 7 3.4262 -5.8702 1.2394 14 6 2.5480 -5.9637 2.4200 15 6 3.0516 -7.1477 3.2720 16 6 4.5272 -7.3017 2.8186 17 6 4.4297 -6.9535 1.3124 18 1 4.0951 -7.8198 0.7417 19 6 5.7818 -6.4630 0.7903 20 7 5.6166 -5.9236 -0.5660 21 1 -0.4850 0.8400 0.0004 22 1 0.6248 -2.5563 -0.8919 23 1 0.6241 -2.5575 0.8881 24 1 0.9447 -4.9818 -0.8931 25 1 0.9453 -4.9829 0.8869 26 1 3.3095 -5.8074 -0.8572 27 1 2.1811 -6.9385 -0.0727 28 1 2.6036 -5.0410 2.9976 29 1 1.5204 -6.1445 2.1044 30 1 2.9976 -6.9086 4.3341 31 1 2.4818 -8.0505 3.0521 32 1 4.8747 -8.3250 2.9611 33 1 5.1722 -6.5955 3.3416 34 1 6.4857 -7.2949 0.7673 35 1 6.1635 -5.6821 1.4480 36 1 4.9205 -5.1934 -0.5825 37 1 6.4964 -5.5932 -0.9333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395310199.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:36 Heat of formation + Delta-G solvation = -44.750152 kcal Electronic energy + Delta-G solvation = -16453.106496 eV Core-core repulsion = 13844.170866 eV Total energy + Delta-G solvation = -2608.935630 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.32712 -36.49793 -34.03936 -32.94916 -32.11813 -28.93322 -28.04772 -26.46592 -24.24437 -22.29826 -21.99539 -20.49557 -19.58468 -16.80967 -16.34938 -16.03182 -15.37620 -14.61277 -14.57604 -14.36645 -14.04565 -13.87576 -13.10304 -12.87286 -12.58622 -12.35916 -12.22089 -11.52920 -11.36679 -11.07665 -10.97961 -10.82910 -10.78787 -10.63839 -10.59644 -10.26816 -9.88327 -9.04716 -8.74526 -8.53064 -8.08602 -7.97931 -6.06801 -4.07697 3.32693 3.37516 3.43181 4.09582 4.38866 4.54343 4.66427 4.95583 5.02921 5.06200 5.29703 5.30754 5.36919 5.54749 5.58480 5.69814 5.77162 5.78049 5.82456 5.92791 5.99244 6.10600 6.14996 6.22284 6.32848 6.49188 7.15935 7.19902 7.35111 7.43604 7.48989 7.70155 7.84812 8.21666 8.66926 9.07072 9.57046 11.04915 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.032088 B = 0.005916 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.399227 B = 4731.655268 C = 4981.650384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.380 6.380 11 C 0.061 3.939 12 C 0.053 3.947 13 N -0.511 5.511 14 C 0.041 3.959 15 C -0.142 4.142 16 C -0.123 4.123 17 C 0.070 3.930 18 H 0.056 0.944 19 C 0.080 3.920 20 N -0.857 5.857 21 H 0.263 0.737 22 H 0.002 0.998 23 H 0.002 0.998 24 H 0.038 0.962 25 H 0.036 0.964 26 H 0.094 0.906 27 H 0.036 0.964 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.360 0.640 37 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -14.708 3.972 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.299 6.299 11 C -0.017 4.017 12 C -0.075 4.075 13 N -0.236 5.236 14 C -0.086 4.086 15 C -0.180 4.180 16 C -0.162 4.162 17 C -0.038 4.038 18 H 0.074 0.926 19 C -0.051 4.051 20 N -0.389 5.389 21 H 0.072 0.928 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.112 0.888 27 H 0.054 0.946 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.049 0.951 36 H 0.177 0.823 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.297 -14.788 3.765 16.914 hybrid contribution -0.200 0.997 0.400 1.092 sum 7.096 -13.791 4.164 16.059 Atomic orbital electron populations 1.69968 1.06096 1.27027 1.50896 1.24946 0.94951 0.99381 0.95296 0.86357 0.79678 0.82386 0.78188 1.20502 1.21146 1.19669 1.21055 0.94036 0.89365 1.50313 0.91579 1.20164 0.88867 0.83922 0.95061 1.87925 1.34653 1.12316 1.95021 1.22404 0.94070 0.86359 0.98863 1.22443 0.95901 0.95643 0.93520 1.63422 1.14260 1.44211 1.01695 1.22861 0.95791 0.98256 0.91728 1.22791 0.96043 0.98718 1.00485 1.22712 0.96966 1.01336 0.95189 1.22651 0.93241 0.92719 0.95227 0.92574 1.21663 0.95410 0.98323 0.89745 1.58950 1.13850 1.43826 1.22278 0.92754 0.98037 0.98019 0.94354 0.94596 0.88774 0.94626 0.90201 0.92556 0.90914 0.91858 0.91177 0.90606 0.91742 0.95095 0.82323 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 7 C -0.51 -15.22 9.43 -34.44 -0.32 -15.54 16 8 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 9 C 0.19 5.43 5.69 36.00 0.20 5.63 16 10 O -0.38 -9.27 10.26 -35.23 -0.36 -9.63 16 11 C 0.06 1.17 5.82 37.16 0.22 1.38 16 12 C 0.05 0.84 4.73 -3.83 -0.02 0.82 16 13 N -0.51 -7.88 4.41 -223.38 -0.99 -8.87 16 14 C 0.04 0.60 6.09 -2.84 -0.02 0.58 16 15 C -0.14 -1.57 6.94 -24.91 -0.17 -1.75 16 16 C -0.12 -1.33 6.49 -24.60 -0.16 -1.49 16 17 C 0.07 0.90 2.83 -66.18 -0.19 0.71 16 18 H 0.06 0.72 7.72 -51.93 -0.40 0.32 16 19 C 0.08 1.00 6.62 -3.82 -0.03 0.97 16 20 N -0.86 -11.51 8.96 -10.37 -0.09 -11.60 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 22 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 23 H 0.00 0.06 8.14 -51.93 -0.42 -0.37 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.04 0.67 6.13 -51.93 -0.32 0.35 16 26 H 0.09 1.54 5.77 -51.93 -0.30 1.24 16 27 H 0.04 0.50 8.01 -51.93 -0.42 0.09 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 0.81 6.06 -51.92 -0.31 0.49 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.83 7.97 -51.93 -0.41 0.42 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.03 0.41 8.03 -51.93 -0.42 -0.01 16 36 H 0.36 5.69 6.31 -39.29 -0.25 5.44 16 37 H 0.33 3.89 9.08 -39.29 -0.36 3.53 16 LS Contribution 294.21 15.07 4.43 4.43 Total: -1.00 -31.16 294.21 -7.98 -39.14 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.11 Total: 3.13 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -0.58 Total: -7.16 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.34 Total: -47.04 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.36 Total: -9.63 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.16 -7.98 -39.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395310199.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.608 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds