Wall clock time and date at job start Mon Mar 30 2020 02:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46499 * 109.47396 * 2 1 4 4 C 1.36939 * 120.00204 * 264.52125 * 3 2 1 5 5 H 1.08001 * 120.00386 * 146.55833 * 4 3 2 6 6 C 1.38813 * 119.99796 * 326.56002 * 4 3 2 7 7 N 1.31623 * 120.00054 * 337.35612 * 6 4 3 8 8 Si 1.86804 * 119.99971 * 157.35218 * 6 4 3 9 9 H 1.48498 * 109.46838 * 90.00030 * 8 6 4 10 10 H 1.48504 * 109.46990 * 210.00184 * 8 6 4 11 11 H 1.48493 * 109.47192 * 329.99946 * 8 6 4 12 12 C 1.46503 * 119.99999 * 84.51582 * 3 2 1 13 13 H 1.09000 * 110.79491 * 1.82881 * 12 3 2 14 14 C 1.54772 * 110.67046 * 125.23903 * 12 3 2 15 15 O 1.44051 * 102.46012 * 143.77672 * 14 12 3 16 16 N 1.41459 * 107.84218 * 332.88036 * 15 14 12 17 17 C 1.46500 * 124.15956 * 198.75277 * 16 15 14 18 18 C 1.53002 * 109.46900 * 255.00191 * 17 16 15 19 19 C 1.34771 * 111.67820 * 18.75131 * 16 15 14 20 20 O 1.21287 * 126.23964 * 178.82394 * 19 16 15 21 21 H 1.09003 * 109.46845 * 60.00510 * 1 2 3 22 22 H 1.08997 * 109.46938 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47480 * 299.99987 * 1 2 3 24 24 H 1.09000 * 109.47480 * 240.00013 * 2 1 3 25 25 H 1.09004 * 109.47334 * 119.99674 * 2 1 3 26 26 H 0.96996 * 120.00215 * 179.97438 * 7 6 4 27 27 H 1.08995 * 111.03346 * 25.45540 * 14 12 3 28 28 H 1.09000 * 110.80366 * 261.99339 * 14 12 3 29 29 H 1.09006 * 109.46990 * 14.99492 * 17 16 15 30 30 H 1.08999 * 109.47053 * 134.99648 * 17 16 15 31 31 H 1.08992 * 109.47069 * 59.99800 * 18 17 16 32 32 H 1.09005 * 109.46498 * 180.02562 * 18 17 16 33 33 H 1.08998 * 109.46840 * 299.99116 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3534 1.9890 -1.1805 5 1 2.1920 3.0494 -1.3068 6 6 2.9004 1.2422 -2.2148 7 7 3.5046 0.1020 -1.9553 8 14 2.7791 1.8554 -3.9752 9 1 3.9620 2.6964 -4.2890 10 1 2.7366 0.6954 -4.9016 11 1 1.5423 2.6615 -4.1344 12 6 2.1482 2.1122 1.2629 13 1 1.8731 1.4792 2.1066 14 6 3.5855 2.6612 1.4311 15 8 3.3606 3.9274 2.0801 16 7 2.0713 4.3795 1.7134 17 6 1.6223 5.7689 1.8317 18 6 0.6750 5.8988 3.0262 19 6 1.3069 3.3747 1.2418 20 8 0.1549 3.4626 0.8728 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.8865 -0.4201 -2.6781 27 1 4.0660 2.8027 0.4631 28 1 4.1801 2.0023 2.0639 29 1 2.4852 6.4182 1.9802 30 1 1.1003 6.0609 0.9205 31 1 1.1971 5.6068 3.9373 32 1 0.3406 6.9326 3.1139 33 1 -0.1879 5.2496 2.8778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595301785.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:13 Heat of formation + Delta-G solvation = -17.291662 kcal Electronic energy + Delta-G solvation = -16938.528709 eV Core-core repulsion = 14194.950674 eV Total energy + Delta-G solvation = -2743.578035 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.46539 -38.31090 -37.64121 -35.14008 -33.57229 -32.05683 -30.69282 -29.27684 -26.23117 -25.10812 -23.70207 -22.16418 -21.33582 -19.09623 -17.87412 -17.69363 -17.25871 -16.40667 -16.06041 -15.59393 -15.23801 -14.97778 -14.67089 -14.61531 -14.23493 -13.79660 -13.56527 -13.30518 -13.10234 -12.91436 -12.76563 -12.54105 -12.17166 -12.07693 -11.93387 -11.68541 -11.53328 -11.00659 -10.48812 -9.64855 -8.71106 -7.94856 -5.50850 0.99260 1.40105 1.44662 1.50065 1.55861 2.42955 2.98492 3.19850 3.50125 3.78725 3.96289 4.09647 4.20792 4.24761 4.42890 4.53700 4.71141 4.74326 4.85542 4.89489 4.93553 5.00952 5.12054 5.23479 5.42267 5.47296 5.58597 5.81132 6.23430 6.35455 7.03186 7.08121 7.68317 8.19593 9.03170 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.009766 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.652507 B = 2866.395205 C = 3100.017909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.137 3.863 3 N -0.569 5.569 4 C -0.265 4.265 5 H 0.037 0.963 6 C -0.020 4.020 7 N -0.901 5.901 8 Si 0.949 3.051 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.285 1.285 12 C 0.113 3.887 13 H 0.118 0.882 14 C 0.030 3.970 15 O -0.160 6.160 16 N -0.493 5.493 17 C 0.129 3.871 18 C -0.160 4.160 19 C 0.496 3.504 20 O -0.544 6.544 21 H 0.024 0.976 22 H 0.064 0.936 23 H 0.037 0.963 24 H 0.079 0.921 25 H 0.042 0.958 26 H 0.258 0.742 27 H 0.068 0.932 28 H 0.133 0.867 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.102 0.898 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.808 6.026 8.478 10.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.012 3.988 3 N -0.290 5.290 4 C -0.395 4.395 5 H 0.055 0.945 6 C -0.219 4.219 7 N -0.544 5.544 8 Si 0.777 3.223 9 H -0.205 1.205 10 H -0.207 1.207 11 H -0.211 1.211 12 C 0.000 4.000 13 H 0.136 0.864 14 C -0.049 4.049 15 O -0.163 6.163 16 N -0.274 5.274 17 C 0.011 3.989 18 C -0.218 4.218 19 C 0.283 3.717 20 O -0.421 6.421 21 H 0.043 0.957 22 H 0.083 0.917 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.151 0.849 29 H 0.131 0.869 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.177 6.126 8.320 10.399 hybrid contribution 0.045 0.075 -1.211 1.214 sum -1.132 6.201 7.109 9.501 Atomic orbital electron populations 1.22149 0.98846 1.00090 0.99811 1.21074 0.91286 0.84638 1.01779 1.43755 1.73365 1.11790 1.00044 1.18808 1.35856 0.93323 0.91475 0.94514 1.25549 0.96618 0.98018 1.01746 1.70059 1.36130 1.16074 1.32107 0.85585 0.77824 0.77615 0.81265 1.20522 1.20728 1.21115 1.21870 0.93108 0.92479 0.92521 0.86440 1.24381 0.98041 0.83213 0.99247 1.90777 1.17659 1.39627 1.68232 1.50449 1.03580 1.08923 1.64494 1.21783 0.99415 0.77647 1.00013 1.22131 0.98682 1.03646 0.97349 1.22276 0.86474 0.88087 0.74907 1.90622 1.17355 1.85237 1.48853 0.95669 0.91725 0.94397 0.90336 0.93927 0.93304 0.91333 0.84922 0.86891 0.90601 0.91582 0.87976 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.25 10.23 71.98 0.74 -5.51 16 2 C 0.14 6.30 5.93 86.38 0.51 6.81 16 3 N -0.57 -27.77 2.50 -676.99 -1.69 -29.46 16 4 C -0.26 -14.37 7.88 84.03 0.66 -13.70 16 5 H 0.04 2.13 7.59 -2.91 -0.02 2.11 16 6 C -0.02 -1.10 4.91 84.86 0.42 -0.69 16 7 N -0.90 -49.35 11.33 21.65 0.25 -49.10 16 8 Si 0.95 44.27 29.61 68.60 2.03 46.30 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 12 C 0.11 4.70 3.65 45.18 0.16 4.86 16 13 H 0.12 4.33 7.94 -2.39 -0.02 4.31 16 14 C 0.03 1.10 7.72 72.59 0.56 1.66 16 15 O -0.16 -5.65 12.36 -38.47 -0.48 -6.12 16 16 N -0.49 -18.00 3.72 -461.86 -1.72 -19.72 16 17 C 0.13 3.59 6.94 86.38 0.60 4.19 16 18 C -0.16 -3.70 10.13 71.98 0.73 -2.97 16 19 C 0.50 21.44 6.95 87.99 0.61 22.06 16 20 O -0.54 -26.74 17.76 -3.05 -0.05 -26.80 16 21 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 22 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.08 4.07 5.32 -2.39 -0.01 4.06 16 25 H 0.04 1.77 8.05 -2.38 -0.02 1.75 16 26 H 0.26 13.59 8.31 -92.71 -0.77 12.82 16 27 H 0.07 2.98 7.03 -2.39 -0.02 2.97 16 28 H 0.13 4.07 8.14 -2.39 -0.02 4.05 16 29 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.10 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.04 1.10 8.09 -2.39 -0.02 1.08 16 Total: -1.00 -63.84 280.42 4.41 -59.43 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.09 Total: 8.78 kcal Atomic # 6 Polarization: 11.71 SS G_CDS: 4.99 Total: 16.70 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -3.17 Total: -98.29 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -0.53 Total: -32.92 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.84 4.41 -59.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595301785.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.135 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds