Wall clock time and date at job start Mon Mar 30 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99632 * 2 1 4 4 C 1.53000 * 109.47015 * 179.97438 * 3 2 1 5 5 C 1.50705 * 110.36869 * 62.64553 * 4 3 2 6 6 O 1.21296 * 119.99699 * 97.35159 * 5 4 3 7 7 N 1.34769 * 120.00066 * 277.35044 * 5 4 3 8 8 C 1.37101 * 119.99991 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99696 * 0.02562 * 8 7 5 10 10 C 1.38948 * 119.99948 * 180.02562 * 8 7 5 11 11 N 1.31411 * 120.00230 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99933 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47124 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46882 * 119.99985 * 12 10 8 15 15 H 1.48495 * 109.47174 * 239.99825 * 12 10 8 16 16 C 1.54382 * 110.41276 * 184.99757 * 4 3 2 17 17 C 1.54257 * 105.06052 * 142.62998 * 16 4 3 18 18 C 1.54379 * 105.06256 * 0.02562 * 17 16 4 19 19 N 1.48562 * 104.69842 * 336.08765 * 18 17 16 20 20 H 1.09001 * 109.47049 * 300.00437 * 1 2 3 21 21 H 1.08999 * 109.47028 * 60.00421 * 1 2 3 22 22 H 1.09003 * 109.46627 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47715 * 59.99782 * 3 2 1 24 24 H 1.09002 * 109.46926 * 299.99476 * 3 2 1 25 25 H 0.96998 * 120.00361 * 0.02562 * 7 5 4 26 26 H 0.96999 * 120.00329 * 180.02562 * 11 10 8 27 27 H 1.08997 * 110.32536 * 23.73619 * 16 4 3 28 28 H 1.09004 * 110.32474 * 261.52845 * 16 4 3 29 29 H 1.08998 * 110.32238 * 241.10511 * 17 16 4 30 30 H 1.08997 * 110.41265 * 118.94038 * 17 16 4 31 31 H 1.09002 * 110.41258 * 94.92615 * 18 17 16 32 32 H 1.09002 * 110.41328 * 217.24846 * 18 17 16 33 33 H 1.00899 * 111.00206 * 159.10212 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0076 0.4960 -1.2539 6 8 4.3981 1.1527 -2.1959 7 7 3.9960 -0.8496 -1.3290 8 6 4.4251 -1.4761 -2.4705 9 1 4.7727 -0.8915 -3.3092 10 6 4.4126 -2.8634 -2.5481 11 7 3.9900 -3.5749 -1.5273 12 14 4.9979 -3.7171 -4.1031 13 1 5.4214 -2.6987 -5.0975 14 1 6.1469 -4.6007 -3.7801 15 1 3.8913 -4.5307 -4.6676 16 6 4.1859 2.5792 0.1267 17 6 5.4218 2.3652 1.0247 18 6 5.4145 0.8595 1.3651 19 7 3.9971 0.4439 1.2061 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6886 1.8465 0.8899 24 1 1.6886 1.8463 -0.8901 25 1 3.6834 -1.3747 -0.5758 26 1 3.9816 -4.5433 -1.5813 27 1 3.4939 3.2787 0.5955 28 1 4.4893 2.9454 -0.8541 29 1 5.3363 2.9598 1.9342 30 1 6.3327 2.6268 0.4863 31 1 6.0518 0.3100 0.6723 32 1 5.7444 0.7002 2.3918 33 1 3.9257 -0.5533 1.0699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692195208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:57 Heat of formation + Delta-G solvation = -80.081643 kcal Electronic energy + Delta-G solvation = -16886.398121 eV Core-core repulsion = 14140.097309 eV Total energy + Delta-G solvation = -2746.300813 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.64799 -37.05836 -36.35277 -33.98361 -31.35565 -30.29991 -29.66219 -26.44719 -25.07379 -24.18112 -21.76805 -20.50239 -18.46115 -18.03068 -16.56065 -15.92125 -15.71174 -15.24947 -14.97247 -14.32885 -13.93394 -13.55461 -13.13848 -12.81495 -12.42921 -12.01112 -11.65792 -11.60906 -11.51002 -11.13088 -11.04324 -10.81101 -10.63759 -10.35488 -10.25750 -10.17215 -9.50981 -9.29744 -9.02712 -7.94798 -7.78310 -6.39840 -3.80592 3.15817 3.26685 3.33906 3.84804 4.12224 4.17923 4.51921 4.98901 5.09548 5.13749 5.31266 5.45632 5.49404 5.62266 5.74452 5.83364 5.88335 5.94461 5.99027 6.03093 6.20714 6.28237 6.39013 6.43356 6.52166 7.06094 7.55507 7.56332 7.66458 8.08115 8.62053 9.18136 9.56771 10.06600 10.76920 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.009801 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.479714 B = 2856.070339 C = 3362.017717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.375 6.375 3 C 0.090 3.910 4 C 0.086 3.914 5 C 0.425 3.575 6 O -0.598 6.598 7 N -0.545 5.545 8 C -0.302 4.302 9 H 0.102 0.898 10 C 0.025 3.975 11 N -0.893 5.893 12 Si 0.928 3.072 13 H -0.268 1.268 14 H -0.281 1.281 15 H -0.281 1.281 16 C -0.104 4.104 17 C -0.118 4.118 18 C 0.032 3.968 19 N -0.647 5.647 20 H 0.035 0.965 21 H 0.035 0.965 22 H 0.084 0.916 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.395 0.605 26 H 0.271 0.729 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.992 6.872 6.347 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.012 3.988 4 C -0.008 4.008 5 C 0.209 3.791 6 O -0.483 6.483 7 N -0.180 5.180 8 C -0.431 4.431 9 H 0.120 0.880 10 C -0.178 4.178 11 N -0.534 5.534 12 Si 0.755 3.245 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.142 4.142 17 C -0.156 4.156 18 C -0.098 4.098 19 N -0.280 5.280 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.102 0.898 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.230 0.770 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.942 7.324 6.261 10.075 hybrid contribution 0.243 -1.191 -1.056 1.610 sum -2.699 6.134 5.205 8.485 Atomic orbital electron populations 1.22657 0.81688 1.02530 0.99127 1.87980 1.19044 1.27088 1.95202 1.22376 0.91257 0.85312 0.99809 1.22111 0.94007 0.95486 0.89243 1.20199 0.85564 0.83512 0.89780 1.90481 1.53423 1.64770 1.39674 1.41830 1.55086 1.04549 1.16570 1.19761 1.39481 0.89596 0.94296 0.87997 1.25277 0.97324 0.96445 0.98704 1.69637 1.46392 1.06957 1.30416 0.85823 0.78225 0.79142 0.81275 1.19261 1.20732 1.20699 1.22163 0.96516 0.94117 1.01423 1.22223 0.98210 0.95991 0.99209 1.22905 0.90259 0.95629 1.00963 1.63855 1.16651 1.12189 1.35260 0.94615 0.94599 0.89790 0.92601 0.93066 0.77030 0.91872 0.91312 0.89140 0.91441 0.91450 0.93665 0.90365 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.01 101.05 1.11 1.65 16 2 O -0.37 -7.15 10.11 -35.23 -0.36 -7.50 16 3 C 0.09 1.60 4.99 37.16 0.19 1.79 16 4 C 0.09 1.68 0.80 -130.95 -0.11 1.58 16 5 C 0.43 10.55 6.01 -10.99 -0.07 10.49 16 6 O -0.60 -16.72 15.20 5.54 0.08 -16.64 16 7 N -0.55 -14.41 4.97 -10.96 -0.05 -14.47 16 8 C -0.30 -8.64 9.68 -14.93 -0.14 -8.78 16 9 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 10 C 0.02 0.68 5.50 -17.47 -0.10 0.58 16 11 N -0.89 -24.71 13.05 55.50 0.72 -23.98 16 12 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 13 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 14 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 C -0.10 -1.75 6.04 -25.35 -0.15 -1.90 16 17 C -0.12 -1.78 7.00 -25.35 -0.18 -1.96 16 18 C 0.03 0.53 7.13 -2.18 -0.02 0.52 16 19 N -0.65 -11.82 7.03 -97.09 -0.68 -12.50 16 20 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 21 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.39 10.26 6.18 -40.82 -0.25 10.01 16 26 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.07 0.98 7.82 -51.93 -0.41 0.57 16 28 H 0.09 1.69 6.83 -51.93 -0.35 1.34 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.85 8.05 -51.93 -0.42 0.43 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.35 6.85 6.93 -39.29 -0.27 6.58 16 LS Contribution 275.75 15.07 4.16 4.16 Total: -1.00 -31.38 275.75 -5.21 -36.59 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: -4.59 Total: 14.08 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 0.54 Total: 3.95 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.01 Total: -50.95 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.27 Total: -24.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.38 -5.21 -36.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692195208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.496 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds