Wall clock time and date at job start Mon Mar 30 2020 03:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42899 * 113.99632 * 2 1 4 4 C 1.53000 * 109.47015 * 179.97438 * 3 2 1 5 5 C 1.50705 * 110.36869 * 62.64553 * 4 3 2 6 6 O 1.21296 * 119.99699 * 97.35159 * 5 4 3 7 7 N 1.34769 * 120.00066 * 277.35044 * 5 4 3 8 8 C 1.37101 * 119.99991 * 179.97438 * 7 5 4 9 9 H 1.07991 * 119.99696 * 0.02562 * 8 7 5 10 10 C 1.38948 * 119.99948 * 180.02562 * 8 7 5 11 11 N 1.31411 * 120.00230 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99933 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.47124 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46882 * 119.99985 * 12 10 8 15 15 H 1.48495 * 109.47174 * 239.99825 * 12 10 8 16 16 C 1.54382 * 110.41276 * 184.99757 * 4 3 2 17 17 C 1.54257 * 105.06052 * 142.62998 * 16 4 3 18 18 C 1.54379 * 105.06256 * 0.02562 * 17 16 4 19 19 N 1.48562 * 104.69842 * 336.08765 * 18 17 16 20 20 H 1.09001 * 109.47049 * 300.00437 * 1 2 3 21 21 H 1.08999 * 109.47028 * 60.00421 * 1 2 3 22 22 H 1.09003 * 109.46627 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47715 * 59.99782 * 3 2 1 24 24 H 1.09002 * 109.46926 * 299.99476 * 3 2 1 25 25 H 0.96998 * 120.00361 * 0.02562 * 7 5 4 26 26 H 0.96999 * 120.00329 * 180.02562 * 11 10 8 27 27 H 1.08997 * 110.32536 * 23.73619 * 16 4 3 28 28 H 1.09004 * 110.32474 * 261.52845 * 16 4 3 29 29 H 1.08998 * 110.32238 * 241.10511 * 17 16 4 30 30 H 1.08997 * 110.41265 * 118.94038 * 17 16 4 31 31 H 1.09002 * 110.41258 * 94.92615 * 18 17 16 32 32 H 1.09002 * 110.41328 * 217.24846 * 18 17 16 33 33 H 1.00899 * 111.00206 * 159.10212 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.0076 0.4960 -1.2539 6 8 4.3981 1.1527 -2.1959 7 7 3.9960 -0.8496 -1.3290 8 6 4.4251 -1.4761 -2.4705 9 1 4.7727 -0.8915 -3.3092 10 6 4.4126 -2.8634 -2.5481 11 7 3.9900 -3.5749 -1.5273 12 14 4.9979 -3.7171 -4.1031 13 1 5.4214 -2.6987 -5.0975 14 1 6.1469 -4.6007 -3.7801 15 1 3.8913 -4.5307 -4.6676 16 6 4.1859 2.5792 0.1267 17 6 5.4218 2.3652 1.0247 18 6 5.4145 0.8595 1.3651 19 7 3.9971 0.4439 1.2061 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6886 1.8465 0.8899 24 1 1.6886 1.8463 -0.8901 25 1 3.6834 -1.3747 -0.5758 26 1 3.9816 -4.5433 -1.5813 27 1 3.4939 3.2787 0.5955 28 1 4.4893 2.9454 -0.8541 29 1 5.3363 2.9598 1.9342 30 1 6.3327 2.6268 0.4863 31 1 6.0518 0.3100 0.6723 32 1 5.7444 0.7002 2.3918 33 1 3.9257 -0.5533 1.0699 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692195208.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:57 Heat of formation + Delta-G solvation = -105.213396 kcal Electronic energy + Delta-G solvation = -16887.487916 eV Core-core repulsion = 14140.097309 eV Total energy + Delta-G solvation = -2747.390607 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.31145 -38.62980 -37.90996 -36.07472 -33.37986 -31.74027 -31.08566 -27.71077 -27.10152 -25.51842 -23.51373 -21.83317 -20.33684 -19.91210 -18.30528 -17.28712 -17.23826 -16.75872 -16.58594 -16.05313 -15.74461 -14.97671 -14.92433 -14.61966 -13.89263 -13.52251 -13.35322 -13.02493 -12.94850 -12.90168 -12.43422 -12.34478 -12.17623 -12.08354 -12.00371 -11.57408 -11.53648 -10.86524 -10.54212 -10.05270 -9.50732 -8.49639 -5.99779 1.32126 1.37558 1.52240 1.95079 2.25295 2.80323 2.94317 3.16504 3.33761 3.73929 3.86134 4.13261 4.19695 4.29021 4.51866 4.51889 4.56584 4.62908 4.64697 4.82155 4.87139 4.92173 5.01530 5.11076 5.22936 5.35906 5.62631 5.94175 6.12081 6.29057 6.53584 7.06535 7.50536 8.03531 8.66967 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.009801 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.479714 B = 2856.070339 C = 3362.017717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.409 6.409 3 C 0.092 3.908 4 C 0.086 3.914 5 C 0.421 3.579 6 O -0.637 6.637 7 N -0.552 5.552 8 C -0.340 4.340 9 H 0.077 0.923 10 C -0.009 4.009 11 N -0.912 5.912 12 Si 0.994 3.006 13 H -0.274 1.274 14 H -0.268 1.268 15 H -0.269 1.269 16 C -0.104 4.104 17 C -0.113 4.113 18 C 0.027 3.973 19 N -0.634 5.634 20 H 0.064 0.936 21 H 0.040 0.960 22 H 0.086 0.914 23 H 0.091 0.909 24 H 0.046 0.954 25 H 0.395 0.605 26 H 0.279 0.721 27 H 0.105 0.895 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.012 0.988 32 H 0.108 0.892 33 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 7.258 7.591 11.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.329 6.329 3 C 0.014 3.986 4 C -0.009 4.009 5 C 0.207 3.793 6 O -0.525 6.525 7 N -0.188 5.188 8 C -0.470 4.470 9 H 0.095 0.905 10 C -0.210 4.210 11 N -0.552 5.552 12 Si 0.817 3.183 13 H -0.199 1.199 14 H -0.193 1.193 15 H -0.194 1.194 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.102 4.102 19 N -0.265 5.265 20 H 0.083 0.917 21 H 0.059 0.941 22 H 0.105 0.895 23 H 0.109 0.891 24 H 0.065 0.935 25 H 0.230 0.770 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.031 0.969 32 H 0.126 0.874 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.404 7.713 7.536 11.308 hybrid contribution 0.360 -1.300 -1.416 1.956 sum -3.044 6.413 6.119 9.373 Atomic orbital electron populations 1.22858 0.79608 1.03323 1.00757 1.87937 1.21479 1.27950 1.95493 1.22427 0.89699 0.85277 1.01175 1.22229 0.95668 0.96316 0.86654 1.21304 0.83827 0.82949 0.91203 1.90442 1.54765 1.65459 1.41848 1.41872 1.55524 1.05313 1.16062 1.19721 1.41900 0.90482 0.94872 0.90542 1.26088 0.96701 0.96356 1.01852 1.69701 1.46160 1.07565 1.31790 0.84866 0.78318 0.77843 0.77239 1.19863 1.19304 1.19393 1.22231 0.97960 0.93001 1.01018 1.22271 0.97345 0.95070 1.00376 1.23068 0.88818 0.96476 1.01885 1.63960 1.17557 1.11244 1.33710 0.91745 0.94110 0.89543 0.89120 0.93544 0.76971 0.91141 0.87701 0.91573 0.87765 0.91534 0.96916 0.87372 0.85001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.84 11.01 113.37 1.25 2.09 16 2 O -0.41 -15.27 10.11 -148.98 -1.51 -16.78 16 3 C 0.09 3.11 4.99 71.98 0.36 3.47 16 4 C 0.09 3.30 0.80 2.88 0.00 3.30 16 5 C 0.42 21.48 6.01 87.66 0.53 22.00 16 6 O -0.64 -37.05 15.20 -3.08 -0.05 -37.10 16 7 N -0.55 -30.20 4.97 -306.99 -1.53 -31.73 16 8 C -0.34 -20.18 9.68 84.04 0.81 -19.37 16 9 H 0.08 4.83 7.16 -2.92 -0.02 4.81 16 10 C -0.01 -0.51 5.50 84.93 0.47 -0.05 16 11 N -0.91 -50.63 13.05 21.66 0.28 -50.34 16 12 Si 0.99 43.97 29.55 68.60 2.03 45.99 16 13 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 14 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 15 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 16 C -0.10 -3.32 6.04 31.49 0.19 -3.13 16 17 C -0.11 -3.13 7.00 31.49 0.22 -2.91 16 18 C 0.03 0.86 7.13 86.45 0.62 1.47 16 19 N -0.63 -22.41 7.03 -461.07 -3.24 -25.65 16 20 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 23 H 0.09 2.44 8.09 -2.39 -0.02 2.42 16 24 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.40 21.18 6.18 -92.71 -0.57 20.61 16 26 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 27 H 0.10 2.59 7.82 -2.39 -0.02 2.57 16 28 H 0.07 2.46 6.83 -2.38 -0.02 2.44 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.84 16 31 H 0.01 0.48 8.05 -2.39 -0.02 0.46 16 32 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 33 H 0.33 13.24 6.93 -89.69 -0.62 12.62 16 Total: -1.00 -69.26 275.75 0.36 -68.90 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.08 Total: 39.82 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 4.44 Total: 6.88 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -4.48 Total: -107.72 kcal Atomic # 8 Polarization: -52.32 SS G_CDS: -1.55 Total: -53.88 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -69.26 0.36 -68.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692195208.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.309 kcal (2) G-P(sol) polarization free energy of solvation -69.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds