Wall clock time and date at job start Mon Mar 30 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50707 * 110.36911 * 300.70253 * 4 3 2 6 6 O 1.21290 * 120.00113 * 264.30236 * 5 4 3 7 7 N 1.34779 * 119.99827 * 84.29386 * 5 4 3 8 8 C 1.37090 * 120.00154 * 180.02562 * 7 5 4 9 9 H 1.08006 * 120.00056 * 0.02562 * 8 7 5 10 10 C 1.38952 * 120.00589 * 180.02562 * 8 7 5 11 11 N 1.31411 * 119.99336 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00212 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47213 * 59.99662 * 12 10 8 14 14 H 1.48499 * 109.46750 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46993 * 299.99692 * 12 10 8 16 16 C 1.54376 * 110.41566 * 178.35250 * 4 3 2 17 17 C 1.54255 * 105.06351 * 217.36937 * 16 4 3 18 18 C 1.54376 * 105.06109 * 359.97438 * 17 16 4 19 19 N 1.48561 * 110.41140 * 63.04862 * 4 3 2 20 20 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 21 21 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 23 23 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 24 24 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 25 25 H 0.97008 * 120.00041 * 0.02562 * 7 5 4 26 26 H 0.96998 * 119.99551 * 180.02562 * 11 10 8 27 27 H 1.08998 * 110.31894 * 336.26523 * 16 4 3 28 28 H 1.08997 * 110.32281 * 98.36871 * 16 4 3 29 29 H 1.09000 * 110.32907 * 118.89345 * 17 16 4 30 30 H 1.08999 * 110.32553 * 241.10025 * 17 16 4 31 31 H 1.08999 * 110.41743 * 142.63366 * 18 17 16 32 32 H 1.09001 * 110.41309 * 264.95484 * 18 17 16 33 33 H 1.00897 * 111.00484 * 277.82376 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0019 0.4239 1.2138 6 8 4.3597 1.0243 2.2051 7 7 4.0213 -0.9237 1.1985 8 6 4.4451 -1.6158 2.3033 9 1 4.7631 -1.0812 3.1863 10 6 4.4657 -3.0051 2.2874 11 7 4.0784 -3.6555 1.2133 12 14 5.0425 -3.9480 3.7932 13 1 4.1718 -3.6153 4.9492 14 1 4.9690 -5.4062 3.5222 15 1 6.4447 -3.5721 4.1055 16 6 4.1865 2.5838 -0.0423 17 6 5.4265 2.4223 -0.9454 18 6 5.4209 0.9390 -1.3731 19 7 4.0016 0.5149 -1.2421 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 1.6887 1.8463 0.8900 25 1 3.7354 -1.4039 0.4056 26 1 4.0923 -4.6253 1.2023 27 1 3.4966 3.3096 -0.4727 28 1 4.4837 2.8930 0.9598 29 1 5.3453 3.0688 -1.8192 30 1 6.3341 2.6515 -0.3870 31 1 5.7536 0.8398 -2.4063 32 1 6.0566 0.3502 -0.7118 33 1 3.9282 -0.4882 -1.1613 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692195226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:59 Heat of formation + Delta-G solvation = -79.506661 kcal Electronic energy + Delta-G solvation = -16891.122736 eV Core-core repulsion = 14144.846856 eV Total energy + Delta-G solvation = -2746.275880 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.65796 -37.05342 -36.35399 -33.98210 -31.35372 -30.29948 -29.65975 -26.44992 -25.07021 -24.17449 -21.76990 -20.51077 -18.45145 -18.04121 -16.56238 -15.91316 -15.70378 -15.25824 -14.96876 -14.32875 -13.93771 -13.55178 -13.11381 -12.81594 -12.42462 -12.03724 -11.66013 -11.59277 -11.50247 -11.09802 -11.03517 -10.80992 -10.63852 -10.43752 -10.26777 -10.15769 -9.48379 -9.29702 -9.03101 -7.94110 -7.78146 -6.39126 -3.79772 3.20023 3.26030 3.30427 3.86592 4.12526 4.17680 4.51143 4.99487 5.09842 5.13538 5.31395 5.45936 5.49536 5.62108 5.74654 5.83637 5.87931 5.94014 5.99075 6.03142 6.20570 6.27974 6.39144 6.43309 6.51709 7.06356 7.55658 7.56520 7.65579 8.08254 8.62691 9.18663 9.57203 10.07194 10.77612 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.009819 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.292656 B = 2851.064661 C = 3351.070890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.375 6.375 3 C 0.090 3.910 4 C 0.086 3.914 5 C 0.426 3.574 6 O -0.598 6.598 7 N -0.544 5.544 8 C -0.302 4.302 9 H 0.101 0.899 10 C 0.025 3.975 11 N -0.894 5.894 12 Si 0.930 3.070 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 C -0.104 4.104 17 C -0.119 4.119 18 C 0.032 3.968 19 N -0.649 5.649 20 H 0.035 0.965 21 H 0.083 0.917 22 H 0.035 0.965 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.394 0.606 26 H 0.272 0.728 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.046 0.954 33 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 7.202 -5.951 9.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.012 3.988 4 C -0.008 4.008 5 C 0.210 3.790 6 O -0.484 6.484 7 N -0.180 5.180 8 C -0.432 4.432 9 H 0.119 0.881 10 C -0.177 4.177 11 N -0.535 5.535 12 Si 0.757 3.243 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.199 1.199 16 C -0.142 4.142 17 C -0.157 4.157 18 C -0.097 4.097 19 N -0.281 5.281 20 H 0.054 0.946 21 H 0.102 0.898 22 H 0.054 0.946 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.229 0.771 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.108 0.892 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.989 7.637 -5.831 10.062 hybrid contribution 0.256 -1.229 0.984 1.595 sum -2.733 6.408 -4.846 8.486 Atomic orbital electron populations 1.22655 0.81698 1.02529 0.99123 1.87991 1.19039 1.27092 1.95202 1.22373 0.91256 0.85316 0.99838 1.22055 0.94031 0.95683 0.89063 1.20183 0.85442 0.83517 0.89812 1.90477 1.54289 1.68371 1.35260 1.41803 1.55778 1.04327 1.16059 1.19660 1.40318 0.88818 0.94416 0.88115 1.25272 0.97341 0.96730 0.98362 1.69621 1.46894 1.08937 1.28027 0.85935 0.79305 0.77956 0.81108 1.19916 1.20913 1.19938 1.22160 0.96487 0.93986 1.01584 1.22225 0.98192 0.96233 0.99012 1.22927 0.90189 0.95688 1.00915 1.63817 1.16546 1.14028 1.33717 0.94605 0.89798 0.94607 0.92537 0.93051 0.77100 0.91775 0.91315 0.89168 0.91410 0.91438 0.90347 0.93603 0.83694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.01 101.05 1.11 1.65 16 2 O -0.38 -7.20 10.14 -35.23 -0.36 -7.55 16 3 C 0.09 1.60 4.98 37.16 0.19 1.78 16 4 C 0.09 1.69 0.81 -131.11 -0.11 1.58 16 5 C 0.43 10.60 5.94 -10.98 -0.07 10.53 16 6 O -0.60 -16.77 15.23 5.55 0.08 -16.69 16 7 N -0.54 -14.41 4.97 -10.96 -0.05 -14.47 16 8 C -0.30 -8.67 9.68 -14.94 -0.14 -8.82 16 9 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 10 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 11 N -0.89 -24.74 13.05 55.50 0.72 -24.01 16 12 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 15 H -0.27 -6.25 7.11 56.52 0.40 -5.84 16 16 C -0.10 -1.75 6.05 -25.35 -0.15 -1.90 16 17 C -0.12 -1.79 7.00 -25.35 -0.18 -1.96 16 18 C 0.03 0.54 7.14 -2.11 -0.02 0.52 16 19 N -0.65 -11.84 7.07 -97.17 -0.69 -12.52 16 20 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.39 10.24 6.16 -40.82 -0.25 9.99 16 26 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.07 0.97 7.86 -51.93 -0.41 0.57 16 28 H 0.09 1.69 6.85 -51.93 -0.36 1.33 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.86 8.06 -51.93 -0.42 0.44 16 33 H 0.34 6.85 6.84 -39.29 -0.27 6.58 16 LS Contribution 275.81 15.07 4.16 4.16 Total: -1.00 -31.41 275.81 -5.21 -36.63 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -4.59 Total: 14.11 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 0.54 Total: 3.98 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.02 Total: -51.00 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.27 Total: -24.24 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.41 -5.21 -36.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692195226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.880 kcal (2) G-P(sol) polarization free energy of solvation -31.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds