Wall clock time and date at job start Mon Mar 30 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 C 1.50707 * 110.36911 * 300.70253 * 4 3 2 6 6 O 1.21290 * 120.00113 * 264.30236 * 5 4 3 7 7 N 1.34779 * 119.99827 * 84.29386 * 5 4 3 8 8 C 1.37090 * 120.00154 * 180.02562 * 7 5 4 9 9 H 1.08006 * 120.00056 * 0.02562 * 8 7 5 10 10 C 1.38952 * 120.00589 * 180.02562 * 8 7 5 11 11 N 1.31411 * 119.99336 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00212 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47213 * 59.99662 * 12 10 8 14 14 H 1.48499 * 109.46750 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46993 * 299.99692 * 12 10 8 16 16 C 1.54376 * 110.41566 * 178.35250 * 4 3 2 17 17 C 1.54255 * 105.06351 * 217.36937 * 16 4 3 18 18 C 1.54376 * 105.06109 * 359.97438 * 17 16 4 19 19 N 1.48561 * 110.41140 * 63.04862 * 4 3 2 20 20 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 21 21 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 23 23 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 24 24 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 25 25 H 0.97008 * 120.00041 * 0.02562 * 7 5 4 26 26 H 0.96998 * 119.99551 * 180.02562 * 11 10 8 27 27 H 1.08998 * 110.31894 * 336.26523 * 16 4 3 28 28 H 1.08997 * 110.32281 * 98.36871 * 16 4 3 29 29 H 1.09000 * 110.32907 * 118.89345 * 17 16 4 30 30 H 1.08999 * 110.32553 * 241.10025 * 17 16 4 31 31 H 1.08999 * 110.41743 * 142.63366 * 18 17 16 32 32 H 1.09001 * 110.41309 * 264.95484 * 18 17 16 33 33 H 1.00897 * 111.00484 * 277.82376 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.0019 0.4239 1.2138 6 8 4.3597 1.0243 2.2051 7 7 4.0213 -0.9237 1.1985 8 6 4.4451 -1.6158 2.3033 9 1 4.7631 -1.0812 3.1863 10 6 4.4657 -3.0051 2.2874 11 7 4.0784 -3.6555 1.2133 12 14 5.0425 -3.9480 3.7932 13 1 4.1718 -3.6153 4.9492 14 1 4.9690 -5.4062 3.5222 15 1 6.4447 -3.5721 4.1055 16 6 4.1865 2.5838 -0.0423 17 6 5.4265 2.4223 -0.9454 18 6 5.4209 0.9390 -1.3731 19 7 4.0016 0.5149 -1.2421 20 1 -0.3633 0.5139 -0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.6886 1.8464 -0.8900 24 1 1.6887 1.8463 0.8900 25 1 3.7354 -1.4039 0.4056 26 1 4.0923 -4.6253 1.2023 27 1 3.4966 3.3096 -0.4727 28 1 4.4837 2.8930 0.9598 29 1 5.3453 3.0688 -1.8192 30 1 6.3341 2.6515 -0.3870 31 1 5.7536 0.8398 -2.4063 32 1 6.0566 0.3502 -0.7118 33 1 3.9282 -0.4882 -1.1613 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692195226.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:59 Heat of formation + Delta-G solvation = -104.690311 kcal Electronic energy + Delta-G solvation = -16892.214781 eV Core-core repulsion = 14144.846856 eV Total energy + Delta-G solvation = -2747.367925 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.32044 -38.62668 -37.91716 -36.07445 -33.37683 -31.73913 -31.08515 -27.71471 -27.10012 -25.51438 -23.51572 -21.84101 -20.32934 -19.91871 -18.30923 -17.28106 -17.23140 -16.76020 -16.59261 -16.05834 -15.74178 -14.95817 -14.92459 -14.61980 -13.88672 -13.52209 -13.36664 -13.02458 -12.94526 -12.88719 -12.44892 -12.34578 -12.18336 -12.08021 -12.01125 -11.57609 -11.52718 -10.86703 -10.54392 -10.05021 -9.50888 -8.49048 -5.99109 1.35425 1.37488 1.49135 1.96313 2.25626 2.81321 2.92861 3.16940 3.34227 3.74258 3.86040 4.13119 4.20139 4.29199 4.51422 4.51827 4.56223 4.63044 4.64026 4.82408 4.86669 4.92113 5.01327 5.11124 5.22643 5.35706 5.62698 5.94068 6.11510 6.28995 6.54021 7.06834 7.50902 8.03970 8.67204 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.025327 B = 0.009819 C = 0.008354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.292656 B = 2851.064661 C = 3351.070890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.411 6.411 3 C 0.091 3.909 4 C 0.086 3.914 5 C 0.422 3.578 6 O -0.638 6.638 7 N -0.552 5.552 8 C -0.342 4.342 9 H 0.077 0.923 10 C -0.009 4.009 11 N -0.912 5.912 12 Si 0.994 3.006 13 H -0.272 1.272 14 H -0.267 1.267 15 H -0.271 1.271 16 C -0.104 4.104 17 C -0.113 4.113 18 C 0.027 3.973 19 N -0.636 5.636 20 H 0.064 0.936 21 H 0.085 0.915 22 H 0.041 0.959 23 H 0.091 0.909 24 H 0.048 0.952 25 H 0.395 0.605 26 H 0.279 0.721 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.013 0.987 33 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.447 7.695 -7.158 11.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.330 6.330 3 C 0.014 3.986 4 C -0.009 4.009 5 C 0.208 3.792 6 O -0.526 6.526 7 N -0.187 5.187 8 C -0.471 4.471 9 H 0.095 0.905 10 C -0.210 4.210 11 N -0.552 5.552 12 Si 0.817 3.183 13 H -0.198 1.198 14 H -0.191 1.191 15 H -0.196 1.196 16 C -0.142 4.142 17 C -0.151 4.151 18 C -0.102 4.102 19 N -0.266 5.266 20 H 0.083 0.917 21 H 0.104 0.896 22 H 0.060 0.940 23 H 0.109 0.891 24 H 0.066 0.934 25 H 0.230 0.770 26 H 0.089 0.911 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.123 0.877 30 H 0.085 0.915 31 H 0.127 0.873 32 H 0.031 0.969 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.425 8.137 -7.067 11.309 hybrid contribution 0.365 -1.365 1.334 1.944 sum -3.060 6.771 -5.733 9.385 Atomic orbital electron populations 1.22856 0.79598 1.03294 1.00798 1.87947 1.21507 1.28034 1.95502 1.22433 0.89685 0.85244 1.01257 1.22178 0.95706 0.96267 0.86708 1.21291 0.83674 0.83119 0.91100 1.90438 1.55628 1.69044 1.37474 1.41847 1.56222 1.05070 1.15568 1.19652 1.42765 0.89857 0.94846 0.90535 1.26085 0.96690 0.96863 1.01326 1.69689 1.46643 1.09518 1.29372 0.84985 0.78732 0.77159 0.77409 1.19750 1.19128 1.19603 1.22228 0.97942 0.92961 1.01080 1.22274 0.97306 0.95499 0.99998 1.23089 0.88752 0.96374 1.01995 1.63924 1.17453 1.13068 1.32166 0.91741 0.89616 0.94021 0.89108 0.93364 0.77035 0.91132 0.87702 0.91606 0.87720 0.91524 0.87349 0.96867 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.85 11.01 113.37 1.25 2.09 16 2 O -0.41 -15.44 10.14 -148.98 -1.51 -16.95 16 3 C 0.09 3.09 4.98 71.98 0.36 3.45 16 4 C 0.09 3.31 0.81 2.93 0.00 3.31 16 5 C 0.42 21.55 5.94 87.66 0.52 22.07 16 6 O -0.64 -37.13 15.23 -3.06 -0.05 -37.18 16 7 N -0.55 -30.19 4.97 -306.98 -1.53 -31.72 16 8 C -0.34 -20.28 9.68 84.04 0.81 -19.47 16 9 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 10 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 11 N -0.91 -50.68 13.05 21.66 0.28 -50.40 16 12 Si 0.99 43.99 29.55 68.60 2.03 46.01 16 13 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 14 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 C -0.10 -3.31 6.05 31.49 0.19 -3.12 16 17 C -0.11 -3.13 7.00 31.49 0.22 -2.91 16 18 C 0.03 0.86 7.14 86.42 0.62 1.48 16 19 N -0.64 -22.43 7.07 -461.34 -3.26 -25.69 16 20 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 21 H 0.09 2.29 8.14 -2.39 -0.02 2.28 16 22 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 23 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.39 21.14 6.16 -92.70 -0.57 20.57 16 26 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.10 2.58 7.86 -2.39 -0.02 2.56 16 28 H 0.07 2.45 6.85 -2.39 -0.02 2.43 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 32 H 0.01 0.49 8.06 -2.39 -0.02 0.47 16 33 H 0.33 13.23 6.84 -89.70 -0.61 12.62 16 Total: -1.00 -69.34 275.81 0.34 -69.00 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.07 Total: 40.05 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 4.44 Total: 6.88 kcal Atomic # 7 Polarization: -103.30 SS G_CDS: -4.51 Total: -107.81 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -1.56 Total: -54.13 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Total: -69.34 0.34 -69.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692195226.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.691 kcal (2) G-P(sol) polarization free energy of solvation -69.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds