Wall clock time and date at job start Mon Mar 30 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46356 * 2 1 4 4 C 1.53001 * 109.46957 * 240.00284 * 2 1 3 5 5 C 1.50699 * 109.46794 * 174.99901 * 4 2 1 6 6 H 1.08006 * 120.00047 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00106 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99501 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47248 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47277 * 119.99667 * 9 7 5 12 12 H 1.48496 * 109.46860 * 239.99453 * 9 7 5 13 13 O 1.42894 * 109.46913 * 120.00193 * 2 1 3 14 14 C 1.42902 * 113.99825 * 269.99861 * 13 2 1 15 15 C 1.52998 * 109.47046 * 180.02562 * 14 13 2 16 16 C 1.53181 * 109.54470 * 175.00281 * 15 14 13 17 17 C 1.53096 * 109.16280 * 176.84777 * 16 15 14 18 18 O 1.42894 * 109.41507 * 302.38730 * 17 16 15 19 19 C 1.42908 * 114.09865 * 61.16179 * 18 17 16 20 20 C 1.53100 * 109.41145 * 298.84063 * 19 18 17 21 21 H 1.08999 * 109.47054 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47118 * 299.99843 * 1 2 3 23 23 H 1.09002 * 109.46868 * 59.99743 * 1 2 3 24 24 H 1.09003 * 109.46824 * 294.99708 * 4 2 1 25 25 H 1.08999 * 109.47201 * 55.00230 * 4 2 1 26 26 H 0.97005 * 119.99690 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.46951 * 60.00474 * 14 13 2 28 28 H 1.09003 * 109.47283 * 300.00280 * 14 13 2 29 29 H 1.09003 * 109.62017 * 54.78113 * 15 14 13 30 30 H 1.08998 * 109.52547 * 56.93977 * 16 15 14 31 31 H 1.09004 * 109.52249 * 296.74857 * 16 15 14 32 32 H 1.08997 * 109.47878 * 62.37549 * 17 16 15 33 33 H 1.09006 * 109.47765 * 182.40370 * 17 16 15 34 34 H 1.08996 * 109.48078 * 58.82384 * 19 18 17 35 35 H 1.09004 * 109.48442 * 178.85994 * 19 18 17 36 36 H 1.08997 * 109.51667 * 177.51479 * 20 19 18 37 37 H 1.08999 * 109.52001 * 297.70065 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2304 -1.1925 -2.3584 8 7 3.5764 -1.8367 -3.3001 9 14 6.0922 -1.0612 -2.4366 10 1 6.5838 -0.2918 -1.2656 11 1 6.6856 -2.4224 -2.4197 12 1 6.4871 -0.3647 -3.6872 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1829 2.2940 15 6 2.7091 -0.6406 3.4788 16 6 3.0357 0.2925 4.6488 17 6 3.4688 -0.5459 5.8544 18 8 2.4293 -1.4669 6.1906 19 6 2.1136 -2.3953 5.1510 20 6 1.6261 -1.6312 3.9172 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7517 -1.7715 -1.2056 25 1 1.6055 -0.2616 -2.1370 26 1 4.0608 -2.2434 -4.0356 27 1 1.2538 0.6546 2.5588 28 1 2.9320 0.9513 2.0450 29 1 3.6060 -1.1867 3.1865 30 1 2.1515 0.8744 4.9086 31 1 3.8447 0.9651 4.3635 32 1 4.3764 -1.0965 5.6071 33 1 3.6615 0.1104 6.7032 34 1 3.0034 -2.9702 4.8945 35 1 1.3299 -3.0714 5.4930 36 1 1.4268 -2.3345 3.1086 37 1 0.7133 -1.0882 4.1622 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:31 Heat of formation + Delta-G solvation = -122.842349 kcal Electronic energy + Delta-G solvation = -16384.194600 eV Core-core repulsion = 13739.579887 eV Total energy + Delta-G solvation = -2644.614713 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.40542 -37.51434 -34.38981 -32.88478 -31.13932 -30.94032 -27.36041 -26.98384 -23.54737 -23.21109 -22.36980 -20.21928 -19.77190 -16.34097 -16.16605 -16.12054 -15.92500 -14.95685 -14.71160 -14.58759 -13.98253 -13.44941 -13.40993 -12.45777 -12.34315 -12.29543 -11.88117 -11.69069 -11.33806 -11.29389 -11.23647 -10.81471 -10.72888 -10.55676 -10.43070 -10.19130 -10.04830 -9.48084 -9.37154 -9.11011 -8.57407 -8.33262 -5.95959 -3.95996 3.33084 3.40319 3.44632 3.86220 4.28978 4.49592 4.80530 4.90832 5.05082 5.06990 5.28596 5.40419 5.42763 5.51563 5.64786 5.69384 5.73556 5.82201 5.91916 5.93349 5.98668 6.03351 6.11986 6.18246 6.32085 6.36173 6.50720 6.75969 6.95467 7.17668 7.55936 7.68774 8.02029 8.21450 8.47096 9.08291 9.66183 11.15848 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.006422 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.132326 B = 4358.697879 C = 4942.647213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.045 0.955 4 C 0.023 3.977 5 C -0.505 4.505 6 H 0.055 0.945 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 O -0.366 6.366 14 C 0.069 3.931 15 C -0.088 4.088 16 C -0.150 4.150 17 C 0.063 3.937 18 O -0.388 6.388 19 C 0.060 3.940 20 C -0.145 4.145 21 H 0.057 0.943 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.025 0.975 25 H 0.029 0.971 26 H 0.259 0.741 27 H 0.036 0.964 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.050 0.950 33 H 0.091 0.909 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.887 3.003 15.096 15.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.063 0.937 4 C -0.014 4.014 5 C -0.543 4.543 6 H 0.073 0.927 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.211 1.211 13 O -0.285 6.285 14 C -0.008 4.008 15 C -0.107 4.107 16 C -0.187 4.187 17 C -0.014 4.014 18 O -0.307 6.307 19 C -0.017 4.017 20 C -0.183 4.183 21 H 0.076 0.924 22 H 0.058 0.942 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.109 0.891 34 H 0.069 0.931 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.918 2.710 15.114 15.630 hybrid contribution 1.094 0.358 -0.523 1.265 sum -1.824 3.068 14.590 15.021 Atomic orbital electron populations 1.22327 0.98255 1.01843 1.00443 1.22373 0.90916 0.96061 0.87229 0.93708 1.19247 0.96261 0.96345 0.89501 1.21173 0.91946 1.33776 1.07427 0.92718 1.24998 0.98273 0.95527 0.95830 1.69971 1.35292 1.36401 1.12208 0.86553 0.86053 0.77731 0.77760 1.19851 1.21060 1.21128 1.87980 1.86685 1.34417 1.19439 1.22359 0.98199 0.92954 0.87279 1.21151 0.99496 0.96576 0.93448 1.22184 1.02378 0.98659 0.95520 1.22534 0.89981 0.91481 0.97383 1.87884 1.56236 1.46813 1.39802 1.22636 1.00006 0.91088 0.87971 1.22163 0.98560 0.99412 0.98135 0.92393 0.94185 0.92250 0.95654 0.95265 0.93143 0.94613 0.93938 0.90050 0.91104 0.90745 0.93149 0.89095 0.93122 0.89070 0.89683 0.91547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.05 9.53 37.16 0.35 -2.69 16 2 C 0.09 1.96 2.67 -26.73 -0.07 1.89 16 3 H 0.04 0.94 7.79 -51.93 -0.40 0.54 16 4 C 0.02 0.61 4.68 -27.88 -0.13 0.48 16 5 C -0.50 -14.53 8.88 -34.44 -0.31 -14.83 16 6 H 0.05 1.56 7.74 -52.48 -0.41 1.15 16 7 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 O -0.37 -7.69 9.36 -35.23 -0.33 -8.01 16 14 C 0.07 1.15 5.13 37.16 0.19 1.34 16 15 C -0.09 -1.27 2.51 -90.44 -0.23 -1.49 16 16 C -0.15 -1.74 5.42 -26.59 -0.14 -1.88 16 17 C 0.06 0.69 6.84 37.21 0.25 0.95 16 18 O -0.39 -5.02 10.77 -35.23 -0.38 -5.40 16 19 C 0.06 0.72 6.84 37.21 0.25 0.97 16 20 C -0.15 -1.96 5.29 -26.59 -0.14 -2.10 16 21 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 22 H 0.04 0.62 7.87 -51.93 -0.41 0.21 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 27 H 0.04 0.54 7.87 -51.93 -0.41 0.14 16 28 H 0.04 0.71 8.09 -51.93 -0.42 0.29 16 29 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.26 7.93 -51.93 -0.41 0.85 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 300.83 15.07 4.53 4.53 Total: -1.00 -31.14 300.83 -7.19 -38.34 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -6.67 Total: -4.00 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: -0.06 Total: -15.89 kcal Atomic # 7 Polarization: -27.33 SS G_CDS: 0.74 Total: -26.59 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -0.71 Total: -13.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.14 -7.19 -38.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.506 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds