Wall clock time and date at job start Mon Mar 30 2020 03:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46356 * 2 1 4 4 C 1.53001 * 109.46957 * 240.00284 * 2 1 3 5 5 C 1.50699 * 109.46794 * 174.99901 * 4 2 1 6 6 H 1.08006 * 120.00047 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00106 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99501 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47248 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47277 * 119.99667 * 9 7 5 12 12 H 1.48496 * 109.46860 * 239.99453 * 9 7 5 13 13 O 1.42894 * 109.46913 * 120.00193 * 2 1 3 14 14 C 1.42902 * 113.99825 * 269.99861 * 13 2 1 15 15 C 1.52998 * 109.47046 * 180.02562 * 14 13 2 16 16 C 1.53181 * 109.54470 * 175.00281 * 15 14 13 17 17 C 1.53096 * 109.16280 * 176.84777 * 16 15 14 18 18 O 1.42894 * 109.41507 * 302.38730 * 17 16 15 19 19 C 1.42908 * 114.09865 * 61.16179 * 18 17 16 20 20 C 1.53100 * 109.41145 * 298.84063 * 19 18 17 21 21 H 1.08999 * 109.47054 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47118 * 299.99843 * 1 2 3 23 23 H 1.09002 * 109.46868 * 59.99743 * 1 2 3 24 24 H 1.09003 * 109.46824 * 294.99708 * 4 2 1 25 25 H 1.08999 * 109.47201 * 55.00230 * 4 2 1 26 26 H 0.97005 * 119.99690 * 180.02562 * 8 7 5 27 27 H 1.09004 * 109.46951 * 60.00474 * 14 13 2 28 28 H 1.09003 * 109.47283 * 300.00280 * 14 13 2 29 29 H 1.09003 * 109.62017 * 54.78113 * 15 14 13 30 30 H 1.08998 * 109.52547 * 56.93977 * 16 15 14 31 31 H 1.09004 * 109.52249 * 296.74857 * 16 15 14 32 32 H 1.08997 * 109.47878 * 62.37549 * 17 16 15 33 33 H 1.09006 * 109.47765 * 182.40370 * 17 16 15 34 34 H 1.08996 * 109.48078 * 58.82384 * 19 18 17 35 35 H 1.09004 * 109.48442 * 178.85994 * 19 18 17 36 36 H 1.08997 * 109.51667 * 177.51479 * 20 19 18 37 37 H 1.08999 * 109.52001 * 297.70065 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0854 -0.5396 7 6 4.2304 -1.1925 -2.3584 8 7 3.5764 -1.8367 -3.3001 9 14 6.0922 -1.0612 -2.4366 10 1 6.5838 -0.2918 -1.2656 11 1 6.6856 -2.4224 -2.4197 12 1 6.4871 -0.3647 -3.6872 13 8 2.0064 -0.6737 1.1667 14 6 2.2001 0.1829 2.2940 15 6 2.7091 -0.6406 3.4788 16 6 3.0357 0.2925 4.6488 17 6 3.4688 -0.5459 5.8544 18 8 2.4293 -1.4669 6.1906 19 6 2.1136 -2.3953 5.1510 20 6 1.6261 -1.6312 3.9172 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.7517 -1.7715 -1.2056 25 1 1.6055 -0.2616 -2.1370 26 1 4.0608 -2.2434 -4.0356 27 1 1.2538 0.6546 2.5588 28 1 2.9320 0.9513 2.0450 29 1 3.6060 -1.1867 3.1865 30 1 2.1515 0.8744 4.9086 31 1 3.8447 0.9651 4.3635 32 1 4.3764 -1.0965 5.6071 33 1 3.6615 0.1104 6.7032 34 1 3.0034 -2.9702 4.8945 35 1 1.3299 -3.0714 5.4930 36 1 1.4268 -2.3345 3.1086 37 1 0.7133 -1.0882 4.1622 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:31 Heat of formation + Delta-G solvation = -142.220086 kcal Electronic energy + Delta-G solvation = -16385.034881 eV Core-core repulsion = 13739.579887 eV Total energy + Delta-G solvation = -2645.454994 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.45134 -39.02203 -35.79263 -34.78041 -32.76765 -31.99570 -29.29970 -28.19077 -25.20990 -24.47739 -23.56685 -21.88113 -20.94827 -18.51915 -17.65099 -17.17515 -16.92467 -16.59928 -16.25886 -15.65773 -15.42507 -14.96794 -14.55720 -14.08166 -13.73196 -13.64086 -13.45823 -13.24376 -13.16698 -12.65091 -12.56137 -12.43982 -12.24468 -12.22809 -11.72029 -11.57980 -11.29359 -11.16166 -11.13379 -10.58280 -10.46280 -10.20303 -8.19261 -6.27801 1.37585 1.38404 1.51256 2.40699 2.85721 3.00373 3.15822 3.73022 3.88328 3.96471 4.10139 4.20824 4.30914 4.35413 4.41806 4.49658 4.54847 4.62498 4.70844 4.79748 4.81343 4.85254 4.92510 4.96376 5.14366 5.17198 5.23570 5.24741 5.37952 5.45401 5.53383 5.80212 6.23717 6.25984 6.62676 6.85315 7.39212 8.93108 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.027096 B = 0.006422 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.132326 B = 4358.697879 C = 4942.647213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 H 0.048 0.952 4 C 0.026 3.974 5 C -0.523 4.523 6 H 0.053 0.947 7 C -0.002 4.002 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.275 1.275 13 O -0.391 6.391 14 C 0.065 3.935 15 C -0.089 4.089 16 C -0.143 4.143 17 C 0.059 3.941 18 O -0.400 6.400 19 C 0.062 3.938 20 C -0.141 4.141 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.067 0.933 24 H -0.008 1.008 25 H 0.012 0.988 26 H 0.263 0.737 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.052 0.948 33 H 0.115 0.885 34 H 0.050 0.950 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 3.967 16.703 17.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.067 0.933 4 C -0.012 4.012 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.787 3.213 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.201 1.201 13 O -0.311 6.311 14 C -0.011 4.011 15 C -0.107 4.107 16 C -0.180 4.180 17 C -0.017 4.017 18 O -0.319 6.319 19 C -0.015 4.015 20 C -0.179 4.179 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.086 0.914 24 H 0.011 0.989 25 H 0.030 0.970 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.133 0.867 34 H 0.068 0.932 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.359 3.685 16.735 17.298 hybrid contribution 0.906 0.055 -1.016 1.363 sum -1.453 3.740 15.719 16.223 Atomic orbital electron populations 1.22209 0.95316 1.02065 1.02297 1.22118 0.93163 0.95049 0.85690 0.93342 1.19132 0.95481 0.94797 0.91741 1.21514 0.93316 1.33830 1.07487 0.92860 1.25924 1.03607 0.95016 0.95374 1.70095 1.37444 1.37180 1.12879 0.85443 0.79626 0.77971 0.78286 1.18863 1.20550 1.20081 1.87933 1.87017 1.35894 1.20271 1.22597 0.99200 0.92875 0.86471 1.21173 0.98838 0.97035 0.93688 1.22153 1.03118 0.98283 0.94465 1.22708 0.89542 0.91486 0.97967 1.87875 1.56817 1.47170 1.40020 1.22653 1.00536 0.91020 0.87272 1.22109 0.98570 0.99030 0.98216 0.93012 0.91302 0.91363 0.98925 0.97001 0.92832 0.92713 0.94207 0.91962 0.90367 0.89699 0.92938 0.86686 0.93153 0.87457 0.91622 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.57 9.53 71.99 0.69 -4.89 16 2 C 0.10 4.16 2.67 30.60 0.08 4.25 16 3 H 0.05 2.01 7.79 -2.39 -0.02 1.99 16 4 C 0.03 1.39 4.68 29.85 0.14 1.53 16 5 C -0.52 -30.63 8.88 25.60 0.23 -30.40 16 6 H 0.05 3.06 7.74 -2.91 -0.02 3.03 16 7 C 0.00 -0.13 5.46 84.65 0.46 0.34 16 8 N -0.93 -57.90 13.29 21.45 0.28 -57.61 16 9 Si 0.96 45.35 29.54 68.60 2.03 47.38 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 13 O -0.39 -16.45 9.36 -148.98 -1.39 -17.85 16 14 C 0.07 2.09 5.13 71.98 0.37 2.46 16 15 C -0.09 -2.45 2.51 -10.67 -0.03 -2.48 16 16 C -0.14 -2.99 5.42 30.69 0.17 -2.82 16 17 C 0.06 1.15 6.84 72.01 0.49 1.65 16 18 O -0.40 -9.44 10.77 -148.98 -1.60 -11.04 16 19 C 0.06 1.39 6.84 72.02 0.49 1.89 16 20 C -0.14 -3.68 5.29 30.69 0.16 -3.52 16 21 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 22 H 0.07 1.97 7.87 -2.39 -0.02 1.95 16 23 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 24 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 25 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 27 H 0.05 1.54 7.87 -2.39 -0.02 1.53 16 28 H 0.04 1.29 8.09 -2.39 -0.02 1.27 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.12 1.69 8.14 -2.38 -0.02 1.68 16 34 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.07 1.95 7.93 -2.39 -0.02 1.93 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -67.01 300.83 3.57 -63.44 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.00 Total: 7.69 kcal Atomic # 6 Polarization: -35.26 SS G_CDS: 3.25 Total: -32.01 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.28 Total: -57.61 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -3.00 Total: -28.89 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -67.01 3.57 -63.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.776 kcal (2) G-P(sol) polarization free energy of solvation -67.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds