Wall clock time and date at job start Mon Mar 30 2020 03:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47009 * 2 1 4 4 C 1.52999 * 109.47441 * 239.99702 * 2 1 3 5 5 C 1.50696 * 109.47397 * 174.99512 * 4 2 1 6 6 H 1.07993 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00099 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00109 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99754 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47351 * 89.99442 * 9 7 5 11 11 H 1.48497 * 109.47149 * 209.99469 * 9 7 5 12 12 H 1.48496 * 109.47179 * 329.99436 * 9 7 5 13 13 O 1.42902 * 109.47557 * 119.99681 * 2 1 3 14 14 C 1.42896 * 113.99888 * 270.00374 * 13 2 1 15 15 C 1.53001 * 109.46913 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.47927 * 305.01801 * 15 14 13 17 17 C 1.53098 * 109.47892 * 184.99934 * 15 14 13 18 18 C 1.53177 * 109.21356 * 182.36258 * 17 15 14 19 19 C 1.53311 * 108.96735 * 56.95427 * 18 17 15 20 20 C 1.53100 * 109.19441 * 303.05955 * 19 18 17 21 21 O 1.42899 * 109.49071 * 65.05228 * 15 14 13 22 22 H 1.09002 * 109.46985 * 300.00308 * 1 2 3 23 23 H 1.09000 * 109.47172 * 60.00416 * 1 2 3 24 24 H 1.09000 * 109.46881 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47224 * 295.00494 * 4 2 1 26 26 H 1.09004 * 109.46587 * 54.99459 * 4 2 1 27 27 H 0.97001 * 120.00257 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47224 * 59.99838 * 14 13 2 29 29 H 1.09002 * 109.47190 * 299.99272 * 14 13 2 30 30 H 1.09002 * 109.52244 * 302.30197 * 17 15 14 31 31 H 1.09004 * 109.52508 * 62.42726 * 17 15 14 32 32 H 1.09001 * 109.54414 * 176.87772 * 18 17 15 33 33 H 1.09002 * 109.54680 * 297.14715 * 18 17 15 34 34 H 1.08992 * 109.51110 * 183.14032 * 19 18 17 35 35 H 1.08999 * 109.55790 * 62.99958 * 19 18 17 36 36 H 1.09002 * 109.47233 * 297.62202 * 20 19 18 37 37 H 1.09002 * 109.48291 * 177.59299 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0860 -0.5393 7 6 4.2305 -1.1935 -2.3577 8 7 5.5412 -1.1011 -2.4129 9 14 3.3016 -2.1088 -3.6952 10 1 2.9407 -1.1641 -4.7825 11 1 4.1600 -3.1895 -4.2432 12 1 2.0656 -2.7006 -3.1231 13 8 2.0064 -0.6736 1.1668 14 6 2.2001 0.1831 2.2940 15 6 2.7080 -0.6406 3.4791 16 1 2.0196 -1.4635 3.6716 17 6 2.7969 0.2515 4.7202 18 6 3.3615 -0.5637 5.8876 19 6 4.7250 -1.1358 5.4825 20 6 4.5617 -1.9743 4.2120 21 8 4.0030 -1.1635 3.1763 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6053 -0.2618 -2.1369 27 1 6.0256 -1.5078 -3.1483 28 1 1.2538 0.6547 2.5588 29 1 2.9320 0.9514 2.0449 30 1 3.4537 1.0969 4.5148 31 1 1.8028 0.6168 4.9782 32 1 3.4791 0.0805 6.7590 33 1 2.6799 -1.3804 6.1255 34 1 5.1097 -1.7635 6.2862 35 1 5.4216 -0.3192 5.2929 36 1 3.8975 -2.8146 4.4141 37 1 5.5354 -2.3483 3.8956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695818089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:34 Heat of formation + Delta-G solvation = -114.218870 kcal Electronic energy + Delta-G solvation = -16492.583781 eV Core-core repulsion = 13848.343010 eV Total energy + Delta-G solvation = -2644.240771 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.25197 -37.37612 -33.48069 -33.29307 -31.99617 -30.80641 -27.80888 -26.66408 -23.98882 -22.77679 -21.80208 -20.34793 -19.77714 -16.64190 -16.27962 -15.98122 -15.84853 -14.79532 -14.46930 -14.24665 -14.01798 -13.55570 -13.05051 -12.55601 -12.37282 -12.31404 -12.10311 -11.84131 -11.59072 -11.41285 -11.18119 -11.04895 -10.63125 -10.53716 -10.36896 -10.04560 -9.68794 -9.54267 -9.18510 -9.05025 -8.63634 -8.39561 -5.88052 -3.83400 3.38982 3.46531 3.51227 4.03563 4.24879 4.57803 4.80715 4.86300 4.93184 5.16991 5.30170 5.43904 5.49445 5.53697 5.63557 5.69347 5.72514 5.79352 5.84823 5.89765 5.91214 5.98327 6.05866 6.12346 6.18131 6.29118 6.35350 6.64187 6.79725 7.19826 7.36319 7.58695 7.90628 8.17293 8.71380 9.20376 9.73716 11.25993 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.006932 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.544658 B = 4038.142688 C = 4734.181183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.052 0.948 4 C -0.013 4.013 5 C -0.502 4.502 6 H 0.074 0.926 7 C 0.063 3.937 8 N -0.906 5.906 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.266 1.266 13 O -0.358 6.358 14 C 0.070 3.930 15 C 0.095 3.905 16 H 0.060 0.940 17 C -0.150 4.150 18 C -0.119 4.119 19 C -0.158 4.158 20 C 0.059 3.941 21 O -0.355 6.355 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.024 0.976 26 H 0.023 0.977 27 H 0.260 0.740 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.046 0.954 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 1.620 14.996 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.041 3.959 3 H 0.070 0.930 4 C -0.050 4.050 5 C -0.540 4.540 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.546 5.546 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.191 1.191 13 O -0.277 6.277 14 C -0.007 4.007 15 C 0.036 3.964 16 H 0.078 0.922 17 C -0.187 4.187 18 C -0.157 4.157 19 C -0.195 4.195 20 C -0.018 4.018 21 O -0.273 6.273 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.041 0.959 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.064 0.936 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.766 1.405 14.711 16.253 hybrid contribution -0.523 -0.281 -0.448 0.744 sum -7.289 1.124 14.263 16.057 Atomic orbital electron populations 1.22375 0.98214 1.01875 1.00736 1.22110 0.90611 0.96271 0.86871 0.93012 1.19708 0.97911 0.96299 0.91060 1.21049 0.89518 1.34453 1.08962 0.90789 1.24998 0.94714 0.96025 0.97907 1.69921 1.06468 1.45952 1.32231 0.86839 0.80342 0.80054 0.82393 1.20490 1.21476 1.19079 1.88038 1.86589 1.33835 1.19261 1.22372 0.98108 0.93166 0.87073 1.22041 0.85831 0.95516 0.92964 0.92176 1.22157 1.01895 0.99375 0.95309 1.21577 0.96815 0.99614 0.97670 1.22248 0.97773 1.00917 0.98605 1.22547 0.99148 0.92509 0.87643 1.88197 1.31689 1.67342 1.40101 0.93816 0.92171 0.92405 0.95766 0.95888 0.93011 0.93233 0.92813 0.90816 0.90999 0.91632 0.91927 0.91235 0.91031 0.93577 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.95 9.53 37.16 0.35 -2.60 16 2 C 0.10 2.11 2.67 -26.73 -0.07 2.04 16 3 H 0.05 1.09 7.79 -51.93 -0.40 0.69 16 4 C -0.01 -0.32 3.75 -27.89 -0.10 -0.42 16 5 C -0.50 -15.13 9.43 -34.44 -0.32 -15.45 16 6 H 0.07 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 8 N -0.91 -29.19 13.96 55.43 0.77 -28.42 16 9 Si 0.88 22.59 27.47 -169.99 -4.67 17.92 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 13 O -0.36 -7.93 9.71 -40.00 -0.39 -8.32 16 14 C 0.07 1.24 5.41 37.16 0.20 1.44 16 15 C 0.09 1.50 2.93 -26.68 -0.08 1.42 16 16 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 17 C -0.15 -1.79 5.41 -26.59 -0.14 -1.93 16 18 C -0.12 -1.24 6.04 -26.48 -0.16 -1.40 16 19 C -0.16 -1.77 6.14 -26.52 -0.16 -1.93 16 20 C 0.06 0.83 6.84 37.21 0.25 1.09 16 21 O -0.35 -6.71 10.37 -40.00 -0.41 -7.13 16 22 H 0.04 0.63 7.87 -51.93 -0.41 0.23 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 25 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 26 H 0.02 0.56 7.57 -51.93 -0.39 0.16 16 27 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 28 H 0.05 0.72 7.87 -51.93 -0.41 0.31 16 29 H 0.05 0.99 8.09 -51.93 -0.42 0.58 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 298.12 15.07 4.49 4.49 Total: -1.00 -33.88 298.12 -7.18 -41.07 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -6.64 Total: -3.72 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -0.33 Total: -15.90 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: 0.77 Total: -28.42 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.80 Total: -15.45 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.88 -7.18 -41.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.151 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds