Wall clock time and date at job start Mon Mar 30 2020 03:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47009 * 2 1 4 4 C 1.52999 * 109.47441 * 239.99702 * 2 1 3 5 5 C 1.50696 * 109.47397 * 174.99512 * 4 2 1 6 6 H 1.07993 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00099 * 179.97438 * 5 4 2 8 8 N 1.31508 * 120.00109 * 180.02562 * 7 5 4 9 9 Si 1.86800 * 119.99754 * 0.02562 * 7 5 4 10 10 H 1.48497 * 109.47351 * 89.99442 * 9 7 5 11 11 H 1.48497 * 109.47149 * 209.99469 * 9 7 5 12 12 H 1.48496 * 109.47179 * 329.99436 * 9 7 5 13 13 O 1.42902 * 109.47557 * 119.99681 * 2 1 3 14 14 C 1.42896 * 113.99888 * 270.00374 * 13 2 1 15 15 C 1.53001 * 109.46913 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.47927 * 305.01801 * 15 14 13 17 17 C 1.53098 * 109.47892 * 184.99934 * 15 14 13 18 18 C 1.53177 * 109.21356 * 182.36258 * 17 15 14 19 19 C 1.53311 * 108.96735 * 56.95427 * 18 17 15 20 20 C 1.53100 * 109.19441 * 303.05955 * 19 18 17 21 21 O 1.42899 * 109.49071 * 65.05228 * 15 14 13 22 22 H 1.09002 * 109.46985 * 300.00308 * 1 2 3 23 23 H 1.09000 * 109.47172 * 60.00416 * 1 2 3 24 24 H 1.09000 * 109.46881 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47224 * 295.00494 * 4 2 1 26 26 H 1.09004 * 109.46587 * 54.99459 * 4 2 1 27 27 H 0.97001 * 120.00257 * 180.02562 * 8 7 5 28 28 H 1.09000 * 109.47224 * 59.99838 * 14 13 2 29 29 H 1.09002 * 109.47190 * 299.99272 * 14 13 2 30 30 H 1.09002 * 109.52244 * 302.30197 * 17 15 14 31 31 H 1.09004 * 109.52508 * 62.42726 * 17 15 14 32 32 H 1.09001 * 109.54414 * 176.87772 * 18 17 15 33 33 H 1.09002 * 109.54680 * 297.14715 * 18 17 15 34 34 H 1.08992 * 109.51110 * 183.14032 * 19 18 17 35 35 H 1.08999 * 109.55790 * 62.99958 * 19 18 17 36 36 H 1.09002 * 109.47233 * 297.62202 * 20 19 18 37 37 H 1.09002 * 109.48291 * 177.59299 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0789 -0.0860 -0.5393 7 6 4.2305 -1.1935 -2.3577 8 7 5.5412 -1.1011 -2.4129 9 14 3.3016 -2.1088 -3.6952 10 1 2.9407 -1.1641 -4.7825 11 1 4.1600 -3.1895 -4.2432 12 1 2.0656 -2.7006 -3.1231 13 8 2.0064 -0.6736 1.1668 14 6 2.2001 0.1831 2.2940 15 6 2.7080 -0.6406 3.4791 16 1 2.0196 -1.4635 3.6716 17 6 2.7969 0.2515 4.7202 18 6 3.3615 -0.5637 5.8876 19 6 4.7250 -1.1358 5.4825 20 6 4.5617 -1.9743 4.2120 21 8 4.0030 -1.1635 3.1763 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.7517 -1.7715 -1.2055 26 1 1.6053 -0.2618 -2.1369 27 1 6.0256 -1.5078 -3.1483 28 1 1.2538 0.6547 2.5588 29 1 2.9320 0.9514 2.0449 30 1 3.4537 1.0969 4.5148 31 1 1.8028 0.6168 4.9782 32 1 3.4791 0.0805 6.7590 33 1 2.6799 -1.3804 6.1255 34 1 5.1097 -1.7635 6.2862 35 1 5.4216 -0.3192 5.2929 36 1 3.8975 -2.8146 4.4141 37 1 5.5354 -2.3483 3.8956 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695818089.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:34 Heat of formation + Delta-G solvation = -137.357293 kcal Electronic energy + Delta-G solvation = -16493.587138 eV Core-core repulsion = 13848.343010 eV Total energy + Delta-G solvation = -2645.244128 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.45578 -38.94656 -35.28060 -34.53710 -33.73742 -32.29041 -29.69683 -27.88615 -25.12465 -24.66211 -23.05725 -21.87365 -21.05898 -18.89840 -17.73323 -17.40220 -17.04586 -16.45425 -15.95655 -15.44297 -15.37581 -14.96429 -14.68560 -14.14772 -13.88394 -13.66802 -13.51134 -13.41087 -13.16144 -12.81737 -12.45165 -12.24063 -12.17464 -11.97659 -11.75470 -11.58820 -11.43801 -11.23317 -11.15381 -10.73791 -10.34860 -10.25202 -8.24116 -6.26519 1.34788 1.38916 1.50921 2.39087 2.81870 2.89227 3.12356 3.84554 3.92631 3.96633 4.08190 4.13173 4.18524 4.32364 4.38580 4.44335 4.49199 4.56235 4.66860 4.75156 4.84960 4.89666 4.94425 5.06432 5.06767 5.09803 5.17091 5.18676 5.29019 5.38399 5.43523 5.69218 6.31556 6.40142 6.60474 6.80058 7.34858 8.93869 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.029512 B = 0.006932 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.544658 B = 4038.142688 C = 4734.181183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.095 3.905 3 H 0.043 0.957 4 C -0.013 4.013 5 C -0.514 4.514 6 H 0.021 0.979 7 C -0.004 4.004 8 N -0.956 5.956 9 Si 0.955 3.045 10 H -0.259 1.259 11 H -0.285 1.285 12 H -0.249 1.249 13 O -0.392 6.392 14 C 0.065 3.935 15 C 0.090 3.910 16 H 0.064 0.936 17 C -0.143 4.143 18 C -0.116 4.116 19 C -0.152 4.152 20 C 0.048 3.952 21 O -0.408 6.408 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.058 0.942 25 H 0.018 0.982 26 H 0.041 0.959 27 H 0.264 0.736 28 H 0.088 0.912 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.682 1.394 15.755 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.062 0.938 4 C -0.050 4.050 5 C -0.552 4.552 6 H 0.040 0.960 7 C -0.199 4.199 8 N -0.598 5.598 9 Si 0.778 3.222 10 H -0.184 1.184 11 H -0.211 1.211 12 H -0.172 1.172 13 O -0.312 6.312 14 C -0.012 4.012 15 C 0.032 3.968 16 H 0.082 0.918 17 C -0.180 4.180 18 C -0.154 4.154 19 C -0.190 4.190 20 C -0.028 4.028 21 O -0.328 6.328 22 H 0.089 0.911 23 H 0.096 0.904 24 H 0.077 0.923 25 H 0.037 0.963 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -9.416 1.195 15.494 18.170 hybrid contribution 0.404 -0.178 -0.619 0.760 sum -9.012 1.017 14.875 17.422 Atomic orbital electron populations 1.22236 0.93957 1.02683 1.03013 1.22070 0.93790 0.94909 0.85428 0.93844 1.19697 0.94464 0.96664 0.94157 1.21315 0.92350 1.33903 1.07649 0.96038 1.26082 0.95698 0.97087 1.01020 1.70100 1.08681 1.47424 1.33595 0.85593 0.79156 0.78701 0.78764 1.18403 1.21106 1.17229 1.87971 1.87159 1.35605 1.20484 1.22656 0.99406 0.92726 0.86401 1.22234 0.84660 0.96143 0.93730 0.91839 1.22130 1.03451 0.98466 0.93976 1.21614 0.96021 1.00141 0.97578 1.22204 0.98633 1.00538 0.97579 1.22763 0.98767 0.93016 0.88244 1.88120 1.33326 1.68431 1.42877 0.91060 0.90421 0.92280 0.96326 0.94066 0.92718 0.89420 0.95163 0.91706 0.88298 0.89146 0.90758 0.88630 0.92015 0.92653 0.89644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.53 71.98 0.69 -4.31 16 2 C 0.10 4.05 2.67 30.59 0.08 4.13 16 3 H 0.04 1.86 7.79 -2.39 -0.02 1.85 16 4 C -0.01 -0.63 3.75 29.85 0.11 -0.52 16 5 C -0.51 -32.20 9.43 25.60 0.24 -31.96 16 6 H 0.02 1.51 7.99 -2.91 -0.02 1.49 16 7 C 0.00 -0.22 5.47 84.66 0.46 0.24 16 8 N -0.96 -63.89 13.96 21.45 0.30 -63.59 16 9 Si 0.96 46.68 27.47 68.60 1.88 48.57 16 10 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.25 -11.38 6.54 99.48 0.65 -10.72 16 13 O -0.39 -17.64 9.71 -144.42 -1.40 -19.05 16 14 C 0.06 2.29 5.41 71.98 0.39 2.68 16 15 C 0.09 2.84 2.93 30.63 0.09 2.93 16 16 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 17 C -0.14 -3.16 5.41 30.69 0.17 -3.00 16 18 C -0.12 -2.10 6.04 30.76 0.19 -1.91 16 19 C -0.15 -3.23 6.14 30.73 0.19 -3.04 16 20 C 0.05 1.41 6.84 72.02 0.49 1.90 16 21 O -0.41 -16.14 10.37 -144.42 -1.50 -17.64 16 22 H 0.07 1.81 7.87 -2.39 -0.02 1.79 16 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 26 H 0.04 1.92 7.57 -2.39 -0.02 1.90 16 27 H 0.26 16.36 8.31 -92.71 -0.77 15.59 16 28 H 0.09 2.37 7.87 -2.39 -0.02 2.35 16 29 H 0.03 1.18 8.09 -2.39 -0.02 1.16 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.65 8.14 -2.38 -0.02 1.64 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -77.46 298.12 3.33 -74.14 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.95 Total: 10.42 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: 3.10 Total: -32.84 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.30 Total: -63.59 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -2.90 Total: -36.69 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.88 Total: 48.57 kcal Total: -77.46 3.33 -74.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695818089.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.220 kcal (2) G-P(sol) polarization free energy of solvation -77.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds