Wall clock time and date at job start Mon Mar 30 2020 03:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42904 * 113.99694 * 2 1 4 4 C 1.53008 * 109.46815 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46972 * 300.00123 * 4 3 2 6 6 C 1.52995 * 109.47034 * 59.99768 * 4 3 2 7 7 C 1.52998 * 109.46788 * 180.02562 * 4 3 2 8 8 H 1.08997 * 110.33352 * 298.46234 * 7 4 3 9 9 C 1.54473 * 110.37602 * 60.83799 * 7 4 3 10 10 C 1.54509 * 104.06724 * 142.80633 * 9 7 4 11 11 C 1.54483 * 104.05795 * 0.02562 * 10 9 7 12 12 H 1.08994 * 110.46519 * 94.90053 * 11 10 9 13 13 C 1.50702 * 110.37089 * 217.18730 * 11 10 9 14 14 H 1.08004 * 119.99410 * 356.83774 * 13 11 10 15 15 C 1.37869 * 120.00184 * 176.83257 * 13 11 10 16 16 N 1.31520 * 120.00147 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 120.00315 * 179.97438 * 15 13 11 18 18 H 1.48510 * 109.46816 * 90.00260 * 17 15 13 19 19 H 1.48496 * 109.47523 * 210.00163 * 17 15 13 20 20 H 1.48507 * 109.47145 * 330.00831 * 17 15 13 21 21 O 1.44423 * 104.80477 * 336.01850 * 11 10 9 22 22 H 1.09003 * 109.46810 * 299.99450 * 1 2 3 23 23 H 1.09001 * 109.47300 * 59.99811 * 1 2 3 24 24 H 1.08999 * 109.46791 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47395 * 299.99875 * 3 2 1 26 26 H 1.09001 * 109.47237 * 60.00652 * 3 2 1 27 27 H 1.09000 * 109.47322 * 65.61000 * 5 4 3 28 28 H 1.08993 * 109.47009 * 185.61210 * 5 4 3 29 29 H 1.08996 * 109.47418 * 305.61471 * 5 4 3 30 30 H 1.09006 * 109.46745 * 63.87721 * 6 4 3 31 31 H 1.09001 * 109.47116 * 183.87117 * 6 4 3 32 32 H 1.09000 * 109.47927 * 303.87597 * 6 4 3 33 33 H 1.08997 * 110.51104 * 261.45316 * 9 7 4 34 34 H 1.09007 * 110.51084 * 24.15902 * 9 7 4 35 35 H 1.09000 * 110.51133 * 241.36058 * 10 9 7 36 36 H 1.08994 * 110.62880 * 118.70092 * 10 9 7 37 37 H 0.96996 * 119.99744 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9875 0.4252 1.2483 6 6 3.9864 0.4256 -1.2501 7 6 4.1578 2.5825 0.0000 8 1 3.8665 3.1271 -0.8981 9 6 3.7323 3.3600 1.2652 10 6 4.9919 4.1673 1.6511 11 6 6.0292 3.7825 0.5730 12 1 6.0265 4.5126 -0.2363 13 6 7.4043 3.6797 1.1809 14 1 7.5526 3.9174 2.2240 15 6 8.4729 3.2822 0.4057 16 7 8.2923 2.9932 -0.8645 17 14 10.1775 3.1556 1.1592 18 1 10.3796 1.7870 1.6992 19 1 11.2004 3.4333 0.1191 20 1 10.3077 4.1456 2.2584 21 8 5.5963 2.4928 0.0880 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6886 1.8464 -0.8899 26 1 1.6887 1.8464 0.8900 27 1 3.6262 -0.6021 1.1994 28 1 5.0762 0.4254 1.2995 29 1 3.5819 0.9110 2.1357 30 1 3.7251 1.0006 -2.1386 31 1 5.0661 0.2794 -1.2166 32 1 3.4895 -0.5438 -1.2856 33 1 2.9029 4.0305 1.0405 34 1 3.4611 2.6700 2.0643 35 1 5.3436 3.8764 2.6410 36 1 4.7871 5.2373 1.6188 37 1 9.0442 2.7139 -1.4100 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700595709.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:04 Heat of formation + Delta-G solvation = -125.919706 kcal Electronic energy + Delta-G solvation = -17016.748681 eV Core-core repulsion = 14372.000524 eV Total energy + Delta-G solvation = -2644.748157 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.66010 -38.77230 -36.09390 -34.41198 -32.57215 -29.85902 -28.23026 -28.12104 -26.87888 -25.69234 -23.29589 -21.76128 -19.74219 -18.73474 -17.36959 -16.94251 -16.70120 -16.51996 -16.14348 -15.54584 -15.43160 -14.49822 -14.35080 -14.19590 -13.94185 -13.61428 -13.20408 -12.84293 -12.69201 -12.63800 -12.40995 -12.30755 -12.14634 -12.03105 -11.83290 -11.51684 -11.18028 -11.11304 -10.98385 -10.69027 -10.50683 -9.96552 -8.14539 -6.34367 1.40349 1.42173 1.52361 2.41136 2.75335 3.14302 3.70917 3.82959 3.87898 4.12819 4.21712 4.28788 4.34472 4.50004 4.54381 4.62754 4.63942 4.71377 4.79400 4.85853 4.90475 4.95372 5.01657 5.05875 5.09804 5.18471 5.28868 5.31984 5.49568 5.54866 5.60765 5.75446 6.18708 6.30307 6.57802 6.96918 7.40753 8.93901 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.044863 B = 0.006907 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.966991 B = 4052.746181 C = 4302.656696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.406 6.406 3 C 0.082 3.918 4 C -0.051 4.051 5 C -0.122 4.122 6 C -0.124 4.124 7 C 0.068 3.932 8 H 0.043 0.957 9 C -0.142 4.142 10 C -0.139 4.139 11 C 0.196 3.804 12 H -0.012 1.012 13 C -0.551 4.551 14 H 0.065 0.935 15 C 0.023 3.977 16 N -0.902 5.902 17 Si 0.960 3.040 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.261 1.261 21 O -0.370 6.370 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.097 0.903 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.513 -3.037 2.611 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.006 3.994 4 C -0.051 4.051 5 C -0.180 4.180 6 C -0.181 4.181 7 C 0.009 3.991 8 H 0.060 0.940 9 C -0.179 4.179 10 C -0.177 4.177 11 C 0.140 3.860 12 H 0.006 0.994 13 C -0.588 4.588 14 H 0.083 0.917 15 C -0.179 4.179 16 N -0.540 5.540 17 Si 0.785 3.215 18 H -0.203 1.203 19 H -0.206 1.206 20 H -0.185 1.185 21 O -0.289 6.289 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.115 0.885 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.190 -3.430 2.398 14.794 hybrid contribution 0.923 0.411 -0.047 1.012 sum -13.267 -3.019 2.351 13.808 Atomic orbital electron populations 1.22926 0.79661 1.03731 1.00785 1.87842 1.21170 1.27959 1.95536 1.22404 0.91342 0.84672 1.01004 1.20457 0.93570 0.94084 0.96968 1.21625 1.00245 0.99775 0.96314 1.21605 1.00062 1.00153 0.96322 1.22888 0.84822 0.94750 0.96636 0.93951 1.23036 0.97763 0.99089 0.98043 1.22904 0.95336 0.99699 0.99775 1.20401 0.93092 0.82244 0.90238 0.99424 1.21465 0.92616 1.47902 0.96827 0.91711 1.25946 1.03256 0.93658 0.95071 1.70182 1.32217 1.44329 1.07255 0.85544 0.78871 0.78678 0.78441 1.20255 1.20592 1.18455 1.89414 1.16987 1.35373 1.87169 0.93138 0.93366 0.88500 0.92652 0.91736 0.92007 0.94715 0.92068 0.93272 0.94940 0.91403 0.89313 0.89920 0.92186 0.91234 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -10.54 9.39 -148.98 -1.40 -11.94 16 3 C 0.08 2.18 4.59 71.98 0.33 2.52 16 4 C -0.05 -1.73 0.47 -52.18 -0.02 -1.76 16 5 C -0.12 -4.28 7.79 71.98 0.56 -3.72 16 6 C -0.12 -4.48 8.24 71.98 0.59 -3.89 16 7 C 0.07 2.71 2.51 31.09 0.08 2.78 16 8 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 9 C -0.14 -4.83 5.38 31.61 0.17 -4.66 16 10 C -0.14 -5.76 6.61 31.61 0.21 -5.55 16 11 C 0.20 10.48 3.11 30.35 0.09 10.57 16 12 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 13 C -0.55 -31.85 8.78 25.60 0.22 -31.62 16 14 H 0.06 3.60 7.59 -2.91 -0.02 3.58 16 15 C 0.02 1.31 5.42 84.65 0.46 1.77 16 16 N -0.90 -55.78 12.94 21.45 0.28 -55.50 16 17 Si 0.96 44.93 29.54 68.60 2.03 46.96 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 O -0.37 -19.60 9.31 -148.98 -1.39 -20.99 16 22 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.52 7.17 -2.39 -0.02 1.50 16 27 H 0.06 1.99 7.85 -2.39 -0.02 1.97 16 28 H 0.03 1.45 7.45 -2.39 -0.02 1.43 16 29 H 0.06 1.93 6.29 -2.39 -0.02 1.91 16 30 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.03 1.37 7.94 -2.39 -0.02 1.35 16 32 H 0.07 2.20 7.57 -2.39 -0.02 2.18 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.58 5.65 -2.38 -0.01 2.57 16 35 H 0.06 2.49 7.73 -2.39 -0.02 2.47 16 36 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -67.58 293.22 4.48 -63.10 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: 1.02 Total: 10.23 kcal Atomic # 6 Polarization: -35.81 SS G_CDS: 3.94 Total: -31.87 kcal Atomic # 7 Polarization: -55.78 SS G_CDS: 0.28 Total: -55.50 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -2.79 Total: -32.92 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.58 4.48 -63.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700595709.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.815 kcal (2) G-P(sol) polarization free energy of solvation -67.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds