Wall clock time and date at job start Mon Mar 30 2020 03:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 114.00179 * 2 1 4 4 C 1.52997 * 109.46968 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47151 * 60.00307 * 4 3 2 6 6 C 1.52990 * 109.47515 * 299.99649 * 4 3 2 7 7 C 1.53005 * 109.46787 * 179.97438 * 4 3 2 8 8 H 1.09003 * 110.41901 * 61.50815 * 7 4 3 9 9 C 1.54477 * 110.37317 * 299.19966 * 7 4 3 10 10 C 1.54512 * 104.06149 * 217.19116 * 9 7 4 11 11 C 1.54483 * 104.06265 * 359.97438 * 10 9 7 12 12 H 1.08994 * 110.37694 * 265.03950 * 11 10 9 13 13 C 1.50706 * 110.37009 * 142.81026 * 11 10 9 14 14 H 1.07999 * 119.99948 * 0.02562 * 13 11 10 15 15 C 1.37880 * 119.99621 * 180.02562 * 13 11 10 16 16 N 1.31512 * 120.00020 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99599 * 180.02562 * 15 13 11 18 18 H 1.48491 * 109.47284 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.46995 * 120.00628 * 17 15 13 20 20 H 1.48500 * 109.46785 * 240.00201 * 17 15 13 21 21 O 1.44424 * 110.37189 * 183.81571 * 7 4 3 22 22 H 1.08997 * 109.47201 * 180.02562 * 1 2 3 23 23 H 1.09003 * 109.47187 * 300.00421 * 1 2 3 24 24 H 1.09003 * 109.46726 * 60.00378 * 1 2 3 25 25 H 1.09000 * 109.47134 * 59.99655 * 3 2 1 26 26 H 1.09003 * 109.46985 * 299.99905 * 3 2 1 27 27 H 1.08998 * 109.47496 * 174.46442 * 5 4 3 28 28 H 1.08999 * 109.47119 * 294.46783 * 5 4 3 29 29 H 1.09004 * 109.47061 * 54.46769 * 5 4 3 30 30 H 1.08995 * 109.47495 * 304.44976 * 6 4 3 31 31 H 1.08999 * 109.47141 * 64.44948 * 6 4 3 32 32 H 1.09004 * 109.47756 * 184.44295 * 6 4 3 33 33 H 1.08998 * 110.51627 * 98.54615 * 9 7 4 34 34 H 1.08998 * 110.51360 * 335.83073 * 9 7 4 35 35 H 1.09000 * 110.51086 * 241.35924 * 10 9 7 36 36 H 1.08996 * 110.51341 * 118.64439 * 10 9 7 37 37 H 0.97006 * 119.99824 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9874 0.4251 -1.2483 6 6 3.9865 0.4256 1.2501 7 6 4.1578 2.5823 0.0000 8 1 3.8670 3.1285 0.8974 9 6 3.7316 3.3602 -1.2648 10 6 4.9911 4.1675 -1.6512 11 6 6.0290 3.7824 -0.5737 12 1 6.0263 4.5138 0.2344 13 6 7.4038 3.6798 -1.1826 14 1 7.5429 3.8685 -2.2368 15 6 8.4838 3.3450 -0.3936 16 7 8.3143 3.1147 0.8900 17 14 10.1880 3.2185 -1.1482 18 1 10.1107 3.5233 -2.5994 19 1 11.0957 4.1897 -0.4864 20 1 10.7124 1.8422 -0.9582 21 8 5.5965 2.4921 -0.0895 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8464 -0.8900 27 1 5.0762 0.4241 -1.2989 28 1 3.6250 -0.6017 -1.2002 29 1 3.5830 0.9119 -2.1358 30 1 3.5974 0.9238 2.1381 31 1 3.6079 -0.5958 1.2113 32 1 5.0756 0.4079 1.2913 33 1 2.9024 4.0307 -1.0395 34 1 3.4601 2.6705 -2.0640 35 1 4.7845 5.2372 -1.6168 36 1 5.3422 3.8770 -2.6413 37 1 9.0741 2.8788 1.4450 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700595711.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:06 Heat of formation + Delta-G solvation = -126.446226 kcal Electronic energy + Delta-G solvation = -17003.247286 eV Core-core repulsion = 14358.476297 eV Total energy + Delta-G solvation = -2644.770989 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.66274 -38.77116 -36.09645 -34.42816 -32.57974 -29.86226 -28.23084 -28.12000 -26.88075 -25.69583 -23.30014 -21.76209 -19.74729 -18.74690 -17.36931 -16.94338 -16.72630 -16.52032 -16.12948 -15.54909 -15.43275 -14.49842 -14.35442 -14.20839 -13.94776 -13.61757 -13.20096 -12.86240 -12.69544 -12.64696 -12.40547 -12.30037 -12.14573 -12.03151 -11.82481 -11.51629 -11.18619 -11.11074 -10.98799 -10.70485 -10.50806 -9.97492 -8.16117 -6.35706 1.39597 1.41194 1.53513 2.40533 2.75062 3.13156 3.71238 3.82918 3.87671 4.12490 4.21405 4.28652 4.34442 4.50181 4.54106 4.62644 4.64112 4.71534 4.78975 4.85747 4.90459 4.95156 5.02068 5.05946 5.09691 5.18652 5.28400 5.31312 5.49486 5.54617 5.60623 5.74874 6.18090 6.30394 6.58862 6.95401 7.39626 8.92787 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.045207 B = 0.006853 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.228698 B = 4084.778064 C = 4325.111552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.082 3.918 4 C -0.051 4.051 5 C -0.123 4.123 6 C -0.125 4.125 7 C 0.068 3.932 8 H 0.043 0.957 9 C -0.142 4.142 10 C -0.139 4.139 11 C 0.196 3.804 12 H -0.010 1.010 13 C -0.548 4.548 14 H 0.064 0.936 15 C 0.022 3.978 16 N -0.904 5.904 17 Si 0.961 3.039 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.282 1.282 21 O -0.373 6.373 22 H 0.097 0.903 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.034 0.966 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.518 -3.220 -2.666 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.006 3.994 4 C -0.051 4.051 5 C -0.180 4.180 6 C -0.182 4.182 7 C 0.010 3.990 8 H 0.061 0.939 9 C -0.180 4.180 10 C -0.177 4.177 11 C 0.140 3.860 12 H 0.007 0.993 13 C -0.585 4.585 14 H 0.082 0.918 15 C -0.180 4.180 16 N -0.542 5.542 17 Si 0.786 3.214 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.208 1.208 21 O -0.293 6.293 22 H 0.115 0.885 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.082 0.918 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.197 -3.606 -2.458 14.852 hybrid contribution 0.918 0.428 0.069 1.015 sum -13.279 -3.178 -2.389 13.861 Atomic orbital electron populations 1.22925 0.79679 1.03728 1.00775 1.87844 1.21154 1.27950 1.95537 1.22420 0.91343 0.84683 1.00994 1.20456 0.93562 0.94067 0.97000 1.21632 1.00295 0.99760 0.96296 1.21610 1.00026 1.00176 0.96382 1.22869 0.84735 0.94764 0.96658 0.93940 1.23040 0.97765 0.99098 0.98053 1.22905 0.95336 0.99707 0.99774 1.20408 0.93068 0.82223 0.90294 0.99254 1.21498 0.92222 1.49314 0.95513 0.91751 1.25961 1.03392 0.93536 0.95099 1.70178 1.31875 1.45912 1.06257 0.85473 0.79124 0.77703 0.79116 1.18516 1.20031 1.20762 1.89408 1.17132 1.35491 1.87237 0.88501 0.93387 0.93137 0.92664 0.91757 0.94659 0.91977 0.92077 0.92984 0.91618 0.94931 0.89321 0.89903 0.91245 0.92177 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 11.01 113.37 1.25 1.68 16 2 O -0.41 -10.51 9.54 -148.98 -1.42 -11.93 16 3 C 0.08 2.17 4.59 71.98 0.33 2.50 16 4 C -0.05 -1.73 0.47 -52.18 -0.02 -1.75 16 5 C -0.12 -4.26 7.79 71.98 0.56 -3.70 16 6 C -0.12 -4.47 8.21 71.98 0.59 -3.88 16 7 C 0.07 2.73 2.51 31.10 0.08 2.81 16 8 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 9 C -0.14 -4.84 5.38 31.61 0.17 -4.67 16 10 C -0.14 -5.76 6.62 31.61 0.21 -5.55 16 11 C 0.20 10.47 3.06 30.35 0.09 10.56 16 12 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 13 C -0.55 -31.71 8.77 25.60 0.22 -31.48 16 14 H 0.06 3.59 7.57 -2.91 -0.02 3.57 16 15 C 0.02 1.27 5.43 84.66 0.46 1.73 16 16 N -0.90 -55.88 13.07 21.45 0.28 -55.60 16 17 Si 0.96 44.95 29.54 68.60 2.03 46.97 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 20 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 21 O -0.37 -19.73 9.33 -148.98 -1.39 -21.12 16 22 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 23 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.51 7.16 -2.39 -0.02 1.49 16 27 H 0.03 1.46 7.45 -2.39 -0.02 1.44 16 28 H 0.06 1.98 7.85 -2.39 -0.02 1.96 16 29 H 0.06 1.92 6.29 -2.39 -0.01 1.90 16 30 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.06 2.14 7.82 -2.39 -0.02 2.12 16 32 H 0.03 1.38 7.71 -2.38 -0.02 1.36 16 33 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.08 2.58 5.65 -2.39 -0.01 2.57 16 35 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 36 H 0.06 2.49 7.71 -2.39 -0.02 2.48 16 37 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -67.59 293.43 4.45 -63.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: 1.02 Total: 10.28 kcal Atomic # 6 Polarization: -35.70 SS G_CDS: 3.94 Total: -31.76 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: 0.28 Total: -55.60 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -2.81 Total: -33.05 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -67.59 4.45 -63.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700595711.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.302 kcal (2) G-P(sol) polarization free energy of solvation -67.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds