Wall clock time and date at job start Mon Mar 30 2020 03:04:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.42899 * 113.99629 * 2 1
4 4 H 1.09003 * 110.29336 * 330.69809 * 3 2 1
5 5 C 1.54378 * 110.32768 * 92.82992 * 3 2 1
6 6 N 1.48824 * 104.46583 * 95.06504 * 5 3 2
7 7 C 1.48559 * 104.23945 * 39.50633 * 6 5 3
8 8 C 1.54263 * 110.32553 * 208.57491 * 3 2 1
9 9 H 1.09006 * 110.32194 * 0.10276 * 8 3 2
10 10 C 1.50695 * 110.32537 * 122.20660 * 8 3 2
11 11 O 1.21280 * 120.00447 * 0.02562 * 10 8 3
12 12 N 1.34783 * 120.00009 * 180.02562 * 10 8 3
13 13 C 1.46500 * 120.00231 * 180.02562 * 12 10 8
14 14 C 1.50698 * 109.47334 * 179.97438 * 13 12 10
15 15 H 1.08000 * 119.99355 * 359.97438 * 14 13 12
16 16 C 1.37870 * 119.99799 * 179.97438 * 14 13 12
17 17 N 1.31512 * 120.00462 * 359.97438 * 16 14 13
18 18 Si 1.86800 * 119.99787 * 180.02562 * 16 14 13
19 19 H 1.48502 * 109.47251 * 59.99738 * 18 16 14
20 20 H 1.48506 * 109.47222 * 179.97438 * 18 16 14
21 21 H 1.48503 * 109.47403 * 299.99984 * 18 16 14
22 22 H 1.09002 * 109.47382 * 59.99956 * 1 2 3
23 23 H 1.09001 * 109.46938 * 299.99942 * 1 2 3
24 24 H 1.09004 * 109.46926 * 180.02562 * 1 2 3
25 25 H 1.08999 * 110.41367 * 213.82452 * 5 3 2
26 26 H 1.09000 * 110.40871 * 336.26127 * 5 3 2
27 27 H 1.00908 * 110.96760 * 159.06084 * 6 5 3
28 28 H 1.08991 * 110.41309 * 201.71504 * 7 6 5
29 29 H 1.09000 * 110.50871 * 79.31683 * 7 6 5
30 30 H 0.96997 * 120.00067 * 359.97438 * 12 10 8
31 31 H 1.09008 * 109.46765 * 300.00110 * 13 12 10
32 32 H 1.08997 * 109.47055 * 59.99222 * 13 12 10
33 33 H 0.97001 * 120.00333 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.3494 2.0134 -0.5004
5 6 2.2936 1.7664 1.4459
6 7 3.7181 1.4042 1.6790
7 6 4.3915 1.7239 0.3940
8 6 3.3887 1.2784 -0.6919
9 1 3.6212 0.2696 -1.0332
10 6 3.4113 2.2404 -1.8516
11 8 2.4255 2.8960 -2.1151
12 7 4.5270 2.3724 -2.5961
13 6 4.5492 3.3080 -3.7232
14 6 5.9028 3.2660 -4.3844
15 1 6.6698 2.6084 -4.0029
16 6 6.1617 4.0670 -5.4762
17 7 5.2274 4.8674 -5.9411
18 14 7.8392 4.0144 -6.2963
19 1 8.1066 2.6392 -6.7887
20 1 7.8614 4.9621 -7.4395
21 1 8.8833 4.3998 -5.3130
22 1 -0.3634 0.5138 -0.8900
23 1 -0.3633 0.5138 0.8900
24 1 -0.3633 -1.0277 0.0005
25 1 2.1548 2.8438 1.5356
26 1 1.6461 1.2392 2.1466
27 1 4.1088 1.9446 2.4363
28 1 5.3228 1.1650 0.3036
29 1 4.5824 2.7944 0.3189
30 1 5.3156 1.8484 -2.3852
31 1 3.7828 3.0255 -4.4450
32 1 4.3531 4.3173 -3.3614
33 1 5.4095 5.4307 -6.7095
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000701943117.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:04:11
Heat of formation + Delta-G solvation = -111.042644 kcal
Electronic energy + Delta-G solvation = -16011.151604 eV
Core-core repulsion = 13263.508221 eV
Total energy + Delta-G solvation = -2747.643383 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 228.126 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.34794 -39.31889 -37.20296 -36.21720 -34.40298 -31.68887 -29.79679 -28.89323
-27.30252 -25.03239 -23.24814 -22.32381 -20.98714 -19.27501 -18.15953 -17.90079
-16.96403 -16.75273 -16.34190 -16.19973 -15.67940 -15.61467 -15.02052 -14.39055
-14.27869 -13.97883 -13.92895 -13.14505 -13.01522 -12.88822 -12.71057 -12.63735
-12.36151 -12.24250 -11.82992 -11.53020 -10.89483 -10.80932 -10.64203 -9.91540
-9.64692 -8.30140 -6.47025 1.43607 1.47437 1.55654 1.60644 2.18381
2.41622 2.91710 3.04975 3.23665 3.43571 3.59696 3.95493 4.10787
4.27168 4.40849 4.47241 4.54332 4.65400 4.66921 4.83344 4.84495
4.89343 5.08445 5.20599 5.44244 5.46953 5.63900 5.82105 6.21632
6.32890 6.62695 6.80217 7.20750 7.38096 8.81849
Molecular weight = 228.13amu
Principal moments of inertia in cm(-1)
A = 0.046119 B = 0.005524 C = 0.005210
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 606.976516 B = 5067.380582 C = 5373.321750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 O -0.391 6.391
3 C 0.088 3.912
4 H 0.072 0.928
5 C 0.021 3.979
6 N -0.655 5.655
7 C 0.054 3.946
8 C -0.107 4.107
9 H 0.125 0.875
10 C 0.506 3.494
11 O -0.598 6.598
12 N -0.699 5.699
13 C 0.265 3.735
14 C -0.557 4.557
15 H 0.085 0.915
16 C 0.005 3.995
17 N -0.931 5.931
18 Si 0.985 3.015
19 H -0.263 1.263
20 H -0.286 1.286
21 H -0.261 1.261
22 H 0.033 0.967
23 H 0.056 0.944
24 H 0.105 0.895
25 H 0.055 0.945
26 H 0.102 0.898
27 H 0.353 0.647
28 H 0.115 0.885
29 H 0.043 0.957
30 H 0.410 0.590
31 H -0.012 1.012
32 H -0.010 1.010
33 H 0.269 0.731
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.313 -8.288 14.444 16.813
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.072 4.072
2 O -0.310 6.310
3 C 0.030 3.970
4 H 0.090 0.910
5 C -0.109 4.109
6 N -0.285 5.285
7 C -0.076 4.076
8 C -0.129 4.129
9 H 0.142 0.858
10 C 0.292 3.708
11 O -0.481 6.481
12 N -0.348 5.348
13 C 0.143 3.857
14 C -0.595 4.595
15 H 0.103 0.897
16 C -0.195 4.195
17 N -0.570 5.570
18 Si 0.808 3.192
19 H -0.187 1.187
20 H -0.211 1.211
21 H -0.185 1.185
22 H 0.052 0.948
23 H 0.075 0.925
24 H 0.124 0.876
25 H 0.073 0.927
26 H 0.120 0.880
27 H 0.170 0.830
28 H 0.133 0.867
29 H 0.061 0.939
30 H 0.246 0.754
31 H 0.006 0.994
32 H 0.008 0.992
33 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -2.968 -8.596 14.033 16.722
hybrid contribution 0.458 1.424 -0.825 1.708
sum -2.511 -7.172 13.208 15.238
Atomic orbital electron populations
1.22993 0.79725 1.04016 1.00467 1.87881 1.21191 1.26899 1.94992
1.22765 0.93585 0.85436 0.95258 0.91015 1.23456 0.92037 0.99190
0.96228 1.63803 1.02015 1.57618 1.05063 1.22844 0.97269 0.99540
0.87966 1.22077 0.97334 1.00084 0.93422 0.85759 1.20971 0.82662
0.83130 0.83988 1.90608 1.35848 1.49314 1.72298 1.46157 1.14711
1.42956 1.30961 1.18590 0.96714 0.87125 0.83288 1.21581 0.98028
1.25250 1.14646 0.89704 1.26052 1.02044 0.94103 0.97255 1.70126
1.35922 1.25626 1.25305 0.85206 0.77858 0.78464 0.77692 1.18728
1.21128 1.18539 0.94799 0.92489 0.87644 0.92707 0.87989 0.82996
0.86702 0.93910 0.75424 0.99438 0.99176 0.92219
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.51 10.86 113.37 1.23 1.74 16
2 O -0.39 -11.05 10.31 -148.98 -1.54 -12.59 16
3 C 0.09 2.59 3.11 31.49 0.10 2.69 16
4 H 0.07 2.45 6.14 -2.39 -0.01 2.44 16
5 C 0.02 0.47 7.23 86.40 0.62 1.10 16
6 N -0.65 -14.07 7.63 -500.22 -3.82 -17.89 16
7 C 0.05 1.29 6.98 86.45 0.60 1.89 16
8 C -0.11 -3.24 3.26 -10.64 -0.03 -3.28 16
9 H 0.12 3.54 7.98 -2.38 -0.02 3.53 16
10 C 0.51 20.59 7.00 87.65 0.61 21.21 16
11 O -0.60 -29.66 15.25 -3.03 -0.05 -29.70 16
12 N -0.70 -29.56 5.52 -466.78 -2.58 -32.14 16
13 C 0.27 14.52 5.43 85.63 0.46 14.99 16
14 C -0.56 -30.07 9.28 25.60 0.24 -29.84 16
15 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16
16 C 0.01 0.28 5.46 84.65 0.46 0.75 16
17 N -0.93 -55.93 13.29 21.44 0.28 -55.64 16
18 Si 0.98 41.93 29.54 68.60 2.03 43.95 16
19 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16
20 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16
21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16
22 H 0.03 0.78 8.10 -2.39 -0.02 0.76 16
23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
24 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16
25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16
26 H 0.10 2.05 8.08 -2.39 -0.02 2.03 16
27 H 0.35 5.84 8.92 -89.69 -0.80 5.04 16
28 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16
29 H 0.04 1.10 7.85 -2.39 -0.02 1.08 16
30 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16
31 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16
32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16
33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16
Total: -1.00 -70.40 281.63 -1.82 -72.21
By element:
Atomic # 1 Polarization: 20.99 SS G_CDS: -0.45 Total: 20.54 kcal
Atomic # 6 Polarization: 6.95 SS G_CDS: 4.30 Total: 11.25 kcal
Atomic # 7 Polarization: -99.56 SS G_CDS: -6.11 Total: -105.67 kcal
Atomic # 8 Polarization: -40.71 SS G_CDS: -1.58 Total: -42.29 kcal
Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal
Total: -70.40 -1.82 -72.21 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000701943117.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.828 kcal
(2) G-P(sol) polarization free energy of solvation -70.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.227 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.816 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal
(6) G-S(sol) free energy of system = (1) + (5) -111.043 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds