Wall clock time and date at job start Mon Mar 30 2020 03:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 H 1.09003 * 110.29336 * 330.69809 * 3 2 1 5 5 C 1.54378 * 110.32768 * 92.82992 * 3 2 1 6 6 N 1.48824 * 104.46583 * 95.06504 * 5 3 2 7 7 C 1.48559 * 104.23945 * 39.50633 * 6 5 3 8 8 C 1.54263 * 110.32553 * 208.57491 * 3 2 1 9 9 H 1.09006 * 110.32194 * 0.10276 * 8 3 2 10 10 C 1.50695 * 110.32537 * 122.20660 * 8 3 2 11 11 O 1.21280 * 120.00447 * 0.02562 * 10 8 3 12 12 N 1.34783 * 120.00009 * 180.02562 * 10 8 3 13 13 C 1.46500 * 120.00231 * 180.02562 * 12 10 8 14 14 C 1.50698 * 109.47334 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99355 * 359.97438 * 14 13 12 16 16 C 1.37870 * 119.99799 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00462 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99787 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47251 * 59.99738 * 18 16 14 20 20 H 1.48506 * 109.47222 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47403 * 299.99984 * 18 16 14 22 22 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 23 23 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 24 24 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 25 25 H 1.08999 * 110.41367 * 213.82452 * 5 3 2 26 26 H 1.09000 * 110.40871 * 336.26127 * 5 3 2 27 27 H 1.00908 * 110.96760 * 159.06084 * 6 5 3 28 28 H 1.08991 * 110.41309 * 201.71504 * 7 6 5 29 29 H 1.09000 * 110.50871 * 79.31683 * 7 6 5 30 30 H 0.96997 * 120.00067 * 359.97438 * 12 10 8 31 31 H 1.09008 * 109.46765 * 300.00110 * 13 12 10 32 32 H 1.08997 * 109.47055 * 59.99222 * 13 12 10 33 33 H 0.97001 * 120.00333 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3494 2.0134 -0.5004 5 6 2.2936 1.7664 1.4459 6 7 3.7181 1.4042 1.6790 7 6 4.3915 1.7239 0.3940 8 6 3.3887 1.2784 -0.6919 9 1 3.6212 0.2696 -1.0332 10 6 3.4113 2.2404 -1.8516 11 8 2.4255 2.8960 -2.1151 12 7 4.5270 2.3724 -2.5961 13 6 4.5492 3.3080 -3.7232 14 6 5.9028 3.2660 -4.3844 15 1 6.6698 2.6084 -4.0029 16 6 6.1617 4.0670 -5.4762 17 7 5.2274 4.8674 -5.9411 18 14 7.8392 4.0144 -6.2963 19 1 8.1066 2.6392 -6.7887 20 1 7.8614 4.9621 -7.4395 21 1 8.8833 4.3998 -5.3130 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 2.1548 2.8438 1.5356 26 1 1.6461 1.2392 2.1466 27 1 4.1088 1.9446 2.4363 28 1 5.3228 1.1650 0.3036 29 1 4.5824 2.7944 0.3189 30 1 5.3156 1.8484 -2.3852 31 1 3.7828 3.0255 -4.4450 32 1 4.3531 4.3173 -3.3614 33 1 5.4095 5.4307 -6.7095 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701943117.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:11 Heat of formation + Delta-G solvation = -111.042644 kcal Electronic energy + Delta-G solvation = -16011.151604 eV Core-core repulsion = 13263.508221 eV Total energy + Delta-G solvation = -2747.643383 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.34794 -39.31889 -37.20296 -36.21720 -34.40298 -31.68887 -29.79679 -28.89323 -27.30252 -25.03239 -23.24814 -22.32381 -20.98714 -19.27501 -18.15953 -17.90079 -16.96403 -16.75273 -16.34190 -16.19973 -15.67940 -15.61467 -15.02052 -14.39055 -14.27869 -13.97883 -13.92895 -13.14505 -13.01522 -12.88822 -12.71057 -12.63735 -12.36151 -12.24250 -11.82992 -11.53020 -10.89483 -10.80932 -10.64203 -9.91540 -9.64692 -8.30140 -6.47025 1.43607 1.47437 1.55654 1.60644 2.18381 2.41622 2.91710 3.04975 3.23665 3.43571 3.59696 3.95493 4.10787 4.27168 4.40849 4.47241 4.54332 4.65400 4.66921 4.83344 4.84495 4.89343 5.08445 5.20599 5.44244 5.46953 5.63900 5.82105 6.21632 6.32890 6.62695 6.80217 7.20750 7.38096 8.81849 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.046119 B = 0.005524 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.976516 B = 5067.380582 C = 5373.321750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.391 6.391 3 C 0.088 3.912 4 H 0.072 0.928 5 C 0.021 3.979 6 N -0.655 5.655 7 C 0.054 3.946 8 C -0.107 4.107 9 H 0.125 0.875 10 C 0.506 3.494 11 O -0.598 6.598 12 N -0.699 5.699 13 C 0.265 3.735 14 C -0.557 4.557 15 H 0.085 0.915 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.985 3.015 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.261 1.261 22 H 0.033 0.967 23 H 0.056 0.944 24 H 0.105 0.895 25 H 0.055 0.945 26 H 0.102 0.898 27 H 0.353 0.647 28 H 0.115 0.885 29 H 0.043 0.957 30 H 0.410 0.590 31 H -0.012 1.012 32 H -0.010 1.010 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.313 -8.288 14.444 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.030 3.970 4 H 0.090 0.910 5 C -0.109 4.109 6 N -0.285 5.285 7 C -0.076 4.076 8 C -0.129 4.129 9 H 0.142 0.858 10 C 0.292 3.708 11 O -0.481 6.481 12 N -0.348 5.348 13 C 0.143 3.857 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.808 3.192 19 H -0.187 1.187 20 H -0.211 1.211 21 H -0.185 1.185 22 H 0.052 0.948 23 H 0.075 0.925 24 H 0.124 0.876 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.170 0.830 28 H 0.133 0.867 29 H 0.061 0.939 30 H 0.246 0.754 31 H 0.006 0.994 32 H 0.008 0.992 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.968 -8.596 14.033 16.722 hybrid contribution 0.458 1.424 -0.825 1.708 sum -2.511 -7.172 13.208 15.238 Atomic orbital electron populations 1.22993 0.79725 1.04016 1.00467 1.87881 1.21191 1.26899 1.94992 1.22765 0.93585 0.85436 0.95258 0.91015 1.23456 0.92037 0.99190 0.96228 1.63803 1.02015 1.57618 1.05063 1.22844 0.97269 0.99540 0.87966 1.22077 0.97334 1.00084 0.93422 0.85759 1.20971 0.82662 0.83130 0.83988 1.90608 1.35848 1.49314 1.72298 1.46157 1.14711 1.42956 1.30961 1.18590 0.96714 0.87125 0.83288 1.21581 0.98028 1.25250 1.14646 0.89704 1.26052 1.02044 0.94103 0.97255 1.70126 1.35922 1.25626 1.25305 0.85206 0.77858 0.78464 0.77692 1.18728 1.21128 1.18539 0.94799 0.92489 0.87644 0.92707 0.87989 0.82996 0.86702 0.93910 0.75424 0.99438 0.99176 0.92219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 10.86 113.37 1.23 1.74 16 2 O -0.39 -11.05 10.31 -148.98 -1.54 -12.59 16 3 C 0.09 2.59 3.11 31.49 0.10 2.69 16 4 H 0.07 2.45 6.14 -2.39 -0.01 2.44 16 5 C 0.02 0.47 7.23 86.40 0.62 1.10 16 6 N -0.65 -14.07 7.63 -500.22 -3.82 -17.89 16 7 C 0.05 1.29 6.98 86.45 0.60 1.89 16 8 C -0.11 -3.24 3.26 -10.64 -0.03 -3.28 16 9 H 0.12 3.54 7.98 -2.38 -0.02 3.53 16 10 C 0.51 20.59 7.00 87.65 0.61 21.21 16 11 O -0.60 -29.66 15.25 -3.03 -0.05 -29.70 16 12 N -0.70 -29.56 5.52 -466.78 -2.58 -32.14 16 13 C 0.27 14.52 5.43 85.63 0.46 14.99 16 14 C -0.56 -30.07 9.28 25.60 0.24 -29.84 16 15 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 16 C 0.01 0.28 5.46 84.65 0.46 0.75 16 17 N -0.93 -55.93 13.29 21.44 0.28 -55.64 16 18 Si 0.98 41.93 29.54 68.60 2.03 43.95 16 19 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 20 H -0.29 -12.10 7.11 99.48 0.71 -11.40 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 22 H 0.03 0.78 8.10 -2.39 -0.02 0.76 16 23 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.10 2.05 8.08 -2.39 -0.02 2.03 16 27 H 0.35 5.84 8.92 -89.69 -0.80 5.04 16 28 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.04 1.10 7.85 -2.39 -0.02 1.08 16 30 H 0.41 14.30 8.32 -92.71 -0.77 13.53 16 31 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 32 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 33 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -70.40 281.63 -1.82 -72.21 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -0.45 Total: 20.54 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 4.30 Total: 11.25 kcal Atomic # 7 Polarization: -99.56 SS G_CDS: -6.11 Total: -105.67 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.58 Total: -42.29 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.95 kcal Total: -70.40 -1.82 -72.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701943117.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.828 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds