Wall clock time and date at job start Mon Mar 30 2020 03:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46503 * 120.00380 * 2 1 4 4 C 1.50703 * 109.47068 * 270.00631 * 3 2 1 5 5 H 1.07999 * 120.00183 * 359.97438 * 4 3 2 6 6 C 1.37882 * 119.99482 * 180.27189 * 4 3 2 7 7 N 1.31514 * 120.00044 * 359.72733 * 6 4 3 8 8 Si 1.86795 * 119.99553 * 179.72303 * 6 4 3 9 9 H 1.48495 * 109.47271 * 90.00077 * 8 6 4 10 10 H 1.48508 * 109.47078 * 210.00357 * 8 6 4 11 11 H 1.48501 * 109.47293 * 330.00008 * 8 6 4 12 12 C 1.34775 * 120.00019 * 180.02562 * 2 1 3 13 13 O 1.21280 * 120.00800 * 175.33368 * 12 2 1 14 14 C 1.50710 * 119.99691 * 355.33331 * 12 2 1 15 15 H 1.09000 * 109.87039 * 317.62331 * 14 12 2 16 16 O 1.43744 * 109.87662 * 196.61291 * 14 12 2 17 17 C 1.44577 * 106.87138 * 214.16977 * 16 14 12 18 18 C 1.54999 * 103.58043 * 39.88629 * 17 16 14 19 19 C 1.54105 * 109.87807 * 78.63041 * 14 12 2 20 20 H 1.08993 * 110.48481 * 240.12994 * 19 14 12 21 21 N 1.46905 * 110.48535 * 2.77864 * 19 14 12 22 22 H 1.08999 * 109.47725 * 95.84065 * 1 2 3 23 23 H 1.09003 * 109.47250 * 215.84671 * 1 2 3 24 24 H 1.09001 * 109.46800 * 335.84058 * 1 2 3 25 25 H 1.08997 * 109.46758 * 150.00320 * 3 2 1 26 26 H 1.09004 * 109.46594 * 30.00431 * 3 2 1 27 27 H 0.97001 * 119.99338 * 179.97438 * 7 6 4 28 28 H 1.08992 * 110.50475 * 281.38699 * 17 16 14 29 29 H 1.09002 * 110.63665 * 158.44662 * 17 16 14 30 30 H 1.09002 * 110.90373 * 204.85852 * 18 17 16 31 31 H 1.08992 * 110.90771 * 81.25411 * 18 17 16 32 32 H 1.00903 * 110.99853 * 173.92943 * 21 19 14 33 33 H 1.00898 * 111.00026 * 297.88064 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1314 2.8749 -1.6727 7 7 3.5588 3.6149 -0.6730 8 14 3.4493 3.4103 -3.4338 9 1 2.3237 4.2566 -3.9048 10 1 4.7128 4.1884 -3.4942 11 1 3.5644 2.2114 -4.3026 12 6 2.1388 -1.1672 -0.0005 13 8 3.3486 -1.1691 -0.0860 14 6 1.3890 -2.4702 0.1051 15 1 0.5986 -2.3834 0.8507 16 8 2.2930 -3.5260 0.4716 17 6 1.8306 -4.7239 -0.1929 18 6 1.3964 -4.2191 -1.5926 19 6 0.7811 -2.8373 -1.2626 20 1 -0.3040 -2.9101 -1.1906 21 7 1.1652 -1.8478 -2.2782 22 1 -0.3634 -0.1046 -1.0223 23 1 -0.3634 -0.8330 0.6018 24 1 -0.3633 0.9377 0.4206 25 1 3.1499 1.1382 0.5138 26 1 1.6085 2.0283 0.5139 27 1 4.0394 4.4386 -0.8503 28 1 0.9825 -5.1531 0.3404 29 1 2.6381 -5.4507 -0.2805 30 1 0.6505 -4.8821 -2.0311 31 1 2.2574 -4.1140 -2.2525 32 1 0.8549 -2.1318 -3.1953 33 1 0.8105 -0.9327 -2.0438 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703142407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:40 Heat of formation + Delta-G solvation = -92.372973 kcal Electronic energy + Delta-G solvation = -16822.011704 eV Core-core repulsion = 14075.177899 eV Total energy + Delta-G solvation = -2746.833805 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.46553 -39.28114 -36.66315 -35.34051 -34.55310 -31.43231 -30.26395 -28.91594 -27.23904 -25.27888 -23.51558 -22.20283 -19.98947 -18.72372 -18.39483 -17.54706 -17.32221 -16.71563 -16.56167 -15.82064 -15.51525 -15.24788 -15.02634 -14.31029 -14.06371 -13.84022 -13.47076 -13.19495 -13.01650 -12.80425 -12.63243 -12.51995 -12.30805 -12.15543 -11.95944 -11.66111 -11.04066 -10.59802 -10.27366 -9.60959 -9.39984 -8.17845 -6.30443 1.36892 1.41352 1.51512 1.86656 2.15475 2.43523 3.11382 3.12834 3.30357 3.50811 3.67525 3.96673 4.15951 4.23503 4.40750 4.43789 4.54283 4.67295 4.81158 4.85004 4.86161 5.03131 5.14241 5.25341 5.62279 5.78846 5.91099 6.11856 6.21916 6.52844 6.75894 6.82138 7.34649 7.56412 8.89668 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.037728 B = 0.007929 C = 0.007542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.966866 B = 3530.531329 C = 3711.628275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.608 5.608 3 C 0.261 3.739 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.968 3.032 9 H -0.261 1.261 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.515 3.485 13 O -0.586 6.586 14 C 0.064 3.936 15 H 0.119 0.881 16 O -0.389 6.389 17 C 0.040 3.960 18 C -0.143 4.143 19 C 0.073 3.927 20 H 0.100 0.900 21 N -0.865 5.865 22 H 0.061 0.939 23 H 0.093 0.907 24 H 0.079 0.921 25 H -0.012 1.012 26 H 0.028 0.972 27 H 0.265 0.735 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.121 0.879 31 H 0.064 0.936 32 H 0.355 0.645 33 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.451 -14.739 -1.650 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.341 5.341 3 C 0.140 3.860 4 C -0.567 4.567 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.303 3.697 13 O -0.465 6.465 14 C 0.003 3.997 15 H 0.136 0.864 16 O -0.308 6.308 17 C -0.036 4.036 18 C -0.181 4.181 19 C -0.039 4.039 20 H 0.117 0.883 21 N -0.403 5.403 22 H 0.079 0.921 23 H 0.112 0.888 24 H 0.098 0.902 25 H 0.006 0.994 26 H 0.046 0.954 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.083 0.917 32 H 0.170 0.830 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.825 -14.720 -1.299 18.926 hybrid contribution -0.338 0.931 -0.899 1.337 sum -12.162 -13.788 -2.197 18.517 Atomic orbital electron populations 1.22027 0.78166 1.04429 1.02210 1.48045 1.07984 1.05885 1.72188 1.18779 0.90828 0.80122 0.96253 1.21724 1.35966 1.06002 0.93052 0.92163 1.25871 0.95204 0.96720 1.01774 1.70065 1.39330 1.15017 1.32966 0.85414 0.77910 0.78053 0.79387 1.18614 1.21142 1.19921 1.20782 0.87611 0.85853 0.75487 1.90613 1.17365 1.87619 1.50950 1.23003 0.91584 0.86144 0.98991 0.86413 1.89013 1.52462 1.18863 1.70452 1.23914 1.01210 0.87161 0.91341 1.23261 1.02092 0.94564 0.98193 1.22782 0.98907 0.92951 0.89253 0.88292 1.58726 1.69982 1.05804 1.05796 0.92050 0.88821 0.90215 0.99363 0.95406 0.92638 0.88552 0.88049 0.86066 0.91745 0.83008 0.83438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.09 9.33 127.77 1.19 3.29 16 2 N -0.61 -26.15 2.29 -851.12 -1.95 -28.11 16 3 C 0.26 14.44 5.17 85.63 0.44 14.88 16 4 C -0.53 -30.82 9.39 25.60 0.24 -30.58 16 5 H 0.06 3.44 7.81 -2.91 -0.02 3.41 16 6 C 0.00 0.14 5.46 84.66 0.46 0.60 16 7 N -0.93 -57.83 13.29 21.45 0.28 -57.55 16 8 Si 0.97 46.02 29.54 68.60 2.03 48.05 16 9 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 10 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 12 C 0.51 23.36 5.57 87.66 0.49 23.85 16 13 O -0.59 -34.53 16.23 15.12 0.25 -34.28 16 14 C 0.06 2.04 3.03 30.23 0.09 2.14 16 15 H 0.12 2.84 6.63 -2.39 -0.02 2.82 16 16 O -0.39 -13.54 10.81 -130.83 -1.41 -14.95 16 17 C 0.04 0.85 7.72 72.67 0.56 1.41 16 18 C -0.14 -2.91 6.86 31.90 0.22 -2.69 16 19 C 0.07 1.74 3.76 45.91 0.17 1.91 16 20 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 21 N -0.87 -26.19 8.17 -164.57 -1.35 -27.54 16 22 H 0.06 1.54 6.43 -2.39 -0.02 1.52 16 23 H 0.09 1.88 6.21 -2.39 -0.01 1.86 16 24 H 0.08 2.20 7.83 -2.39 -0.02 2.18 16 25 H -0.01 -0.77 7.49 -2.39 -0.02 -0.79 16 26 H 0.03 1.53 7.86 -2.38 -0.02 1.51 16 27 H 0.26 15.42 8.31 -92.71 -0.77 14.65 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.67 8.06 -2.39 -0.02 1.65 16 32 H 0.35 8.46 9.05 -89.69 -0.81 7.65 16 33 H 0.35 11.42 5.12 -89.70 -0.46 10.96 16 Total: -1.00 -83.33 271.30 1.57 -81.76 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -0.14 Total: 17.82 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 3.87 Total: 14.80 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -3.01 Total: -113.19 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -1.17 Total: -49.23 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -83.33 1.57 -81.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703142407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.618 kcal (2) G-P(sol) polarization free energy of solvation -83.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds