Wall clock time and date at job start Mon Mar 30 2020 03:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46500 * 119.99770 * 2 1 4 4 C 1.50705 * 109.47392 * 89.99806 * 3 2 1 5 5 H 1.08001 * 119.99529 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00071 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00368 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 119.99659 * 179.97438 * 6 4 3 9 9 H 1.48505 * 109.47323 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47135 * 120.00143 * 8 6 4 11 11 H 1.48502 * 109.47204 * 239.99846 * 8 6 4 12 12 C 1.34774 * 120.00338 * 179.97438 * 2 1 3 13 13 O 1.21278 * 120.00040 * 184.40970 * 12 2 1 14 14 C 1.50699 * 119.99832 * 4.41061 * 12 2 1 15 15 H 1.08997 * 110.32941 * 28.30312 * 14 12 2 16 16 O 1.44430 * 110.37302 * 150.54824 * 14 12 2 17 17 C 1.44425 * 105.27444 * 159.34279 * 16 14 12 18 18 C 1.54475 * 104.80583 * 319.49098 * 17 16 14 19 19 C 1.54476 * 110.37456 * 266.05123 * 14 12 2 20 20 H 1.09003 * 110.50939 * 335.83059 * 19 14 12 21 21 N 1.46893 * 110.51196 * 98.54657 * 19 14 12 22 22 H 1.08996 * 109.46642 * 84.98417 * 1 2 3 23 23 H 1.09003 * 109.46628 * 204.98506 * 1 2 3 24 24 H 1.08997 * 109.47239 * 324.98764 * 1 2 3 25 25 H 1.09001 * 109.47424 * 329.99894 * 3 2 1 26 26 H 1.09006 * 109.47481 * 209.99527 * 3 2 1 27 27 H 0.97002 * 120.00273 * 179.97438 * 7 6 4 28 28 H 1.09004 * 110.36889 * 78.32662 * 17 16 14 29 29 H 1.08997 * 110.37150 * 200.54387 * 17 16 14 30 30 H 1.09004 * 110.50960 * 142.61886 * 18 17 16 31 31 H 1.09003 * 110.51254 * 265.19613 * 18 17 16 32 32 H 1.00905 * 110.99895 * 171.50821 * 21 19 14 33 33 H 1.00904 * 111.00120 * 295.45629 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7039 1.4208 5 1 2.0980 1.0959 2.2417 6 6 3.1268 2.8776 1.6727 7 7 3.5550 3.6172 0.6732 8 14 3.4374 3.4172 3.4339 9 1 2.8595 2.4172 4.3673 10 1 4.8999 3.5249 3.6680 11 1 2.8004 4.7383 3.6665 12 6 2.1390 -1.1671 0.0005 13 8 3.3490 -1.1686 0.0813 14 6 1.3888 -2.4704 -0.0993 15 1 0.4544 -2.3289 -0.6423 16 8 2.2024 -3.4702 -0.7507 17 6 1.6323 -4.7383 -0.3600 18 6 1.2777 -4.5682 1.1338 19 6 1.1112 -3.0403 1.3094 20 1 1.8374 -2.6573 2.0263 21 7 -0.2562 -2.7148 1.7360 22 1 -0.3632 0.0898 -1.0237 23 1 -0.3633 -0.9315 0.4341 24 1 -0.3633 0.8417 0.5896 25 1 1.6084 2.0284 -0.5138 26 1 3.1500 1.1385 -0.5138 27 1 4.0318 4.4432 0.8504 28 1 0.7344 -4.9461 -0.9420 29 1 2.3613 -5.5382 -0.4900 30 1 0.3445 -5.0816 1.3657 31 1 2.0851 -4.9426 1.7632 32 1 -0.4931 -3.1972 2.5900 33 1 -0.3753 -1.7181 1.8389 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000705422347.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:43 Heat of formation + Delta-G solvation = -95.187359 kcal Electronic energy + Delta-G solvation = -16579.658523 eV Core-core repulsion = 13832.702677 eV Total energy + Delta-G solvation = -2746.955846 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.49813 -39.48371 -36.75617 -35.47582 -34.69867 -31.46332 -30.31133 -29.05803 -27.27196 -25.35062 -23.77378 -22.06001 -20.32283 -18.72721 -18.48210 -17.59395 -17.41322 -16.72072 -16.31325 -16.15869 -15.75308 -15.37379 -15.19022 -14.44334 -14.10584 -13.86516 -13.50398 -13.37418 -13.18481 -12.82251 -12.76197 -12.59294 -12.36057 -12.24753 -11.84562 -11.72313 -11.05288 -10.68165 -10.51917 -9.91539 -9.51876 -8.25704 -6.40876 1.34140 1.37183 1.48209 1.53730 2.03014 2.37025 3.02664 3.05158 3.32802 3.36227 3.69221 3.86473 3.99633 4.18959 4.30355 4.48791 4.59891 4.65263 4.80150 4.85070 4.93295 4.94338 5.02287 5.15859 5.49392 5.62822 5.76842 5.99588 6.01275 6.40191 6.60746 6.68572 7.21075 7.35868 8.82211 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.037026 B = 0.007295 C = 0.007064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.034972 B = 3837.333480 C = 3962.791597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.602 5.602 3 C 0.258 3.742 4 C -0.542 4.542 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.971 3.029 9 H -0.266 1.266 10 H -0.283 1.283 11 H -0.266 1.266 12 C 0.494 3.506 13 O -0.586 6.586 14 C 0.073 3.927 15 H 0.119 0.881 16 O -0.386 6.386 17 C 0.038 3.962 18 C -0.137 4.137 19 C 0.072 3.928 20 H 0.026 0.974 21 N -0.825 5.825 22 H 0.071 0.929 23 H 0.101 0.899 24 H 0.077 0.923 25 H 0.031 0.969 26 H -0.007 1.007 27 H 0.268 0.732 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.362 0.638 33 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.836 -14.774 2.190 19.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.334 5.334 3 C 0.137 3.863 4 C -0.581 4.581 5 H 0.073 0.927 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.209 1.209 11 H -0.191 1.191 12 C 0.282 3.718 13 O -0.466 6.466 14 C 0.012 3.988 15 H 0.136 0.864 16 O -0.304 6.304 17 C -0.037 4.037 18 C -0.175 4.175 19 C -0.041 4.041 20 H 0.044 0.956 21 N -0.362 5.362 22 H 0.090 0.910 23 H 0.119 0.881 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.012 0.988 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.136 0.864 31 H 0.100 0.900 32 H 0.178 0.822 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.182 -14.898 1.356 18.677 hybrid contribution 1.041 1.203 1.494 2.182 sum -10.141 -13.695 2.850 17.277 Atomic orbital electron populations 1.22241 0.77578 1.04640 1.03271 1.48123 1.08525 1.05870 1.70853 1.18832 0.91000 0.80072 0.96427 1.21686 1.37055 1.06546 0.92772 0.92733 1.25900 0.94795 0.96403 1.02188 1.70058 1.38814 1.14860 1.33105 0.85325 0.77840 0.78521 0.78834 1.19006 1.20919 1.19104 1.21021 0.87717 0.86279 0.76823 1.90638 1.16904 1.87885 1.51197 1.22973 0.93747 0.86476 0.95623 0.86360 1.89222 1.54385 1.16399 1.70422 1.23752 1.00095 0.85509 0.94384 1.23015 1.04536 0.92597 0.97354 1.22484 0.91063 0.97225 0.93368 0.95551 1.58997 1.21592 1.14758 1.40808 0.91011 0.88112 0.90432 0.95099 0.98837 0.92304 0.89554 0.87200 0.86367 0.89977 0.82239 0.83816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.97 9.87 127.77 1.26 3.23 16 2 N -0.60 -26.70 2.86 -851.12 -2.43 -29.13 16 3 C 0.26 14.35 5.15 85.63 0.44 14.79 16 4 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.36 5.46 84.66 0.46 0.82 16 7 N -0.93 -56.92 13.29 21.45 0.28 -56.63 16 8 Si 0.97 45.14 29.54 68.60 2.03 47.16 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 12 C 0.49 22.73 6.78 87.66 0.59 23.32 16 13 O -0.59 -33.88 16.40 13.17 0.22 -33.67 16 14 C 0.07 2.44 2.62 30.35 0.08 2.52 16 15 H 0.12 3.31 6.63 -2.39 -0.02 3.29 16 16 O -0.39 -13.44 11.08 -132.79 -1.47 -14.91 16 17 C 0.04 0.83 7.63 72.48 0.55 1.38 16 18 C -0.14 -2.65 6.85 31.67 0.22 -2.43 16 19 C 0.07 1.90 3.79 45.99 0.17 2.07 16 20 H 0.03 0.88 7.86 -2.39 -0.02 0.86 16 21 N -0.83 -15.90 8.62 -164.23 -1.42 -17.32 16 22 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.10 2.44 3.23 -2.39 -0.01 2.43 16 24 H 0.08 2.35 8.11 -2.39 -0.02 2.33 16 25 H 0.03 1.72 8.07 -2.39 -0.02 1.70 16 26 H -0.01 -0.42 7.49 -2.38 -0.02 -0.44 16 27 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.12 1.56 7.97 -2.39 -0.02 1.54 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.36 5.13 9.03 -89.69 -0.81 4.32 16 33 H 0.35 7.19 6.67 -89.69 -0.60 6.59 16 Total: -1.00 -78.69 274.37 0.96 -77.74 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -0.28 Total: 12.50 kcal Atomic # 6 Polarization: 10.23 SS G_CDS: 4.02 Total: 14.25 kcal Atomic # 7 Polarization: -99.52 SS G_CDS: -3.56 Total: -103.08 kcal Atomic # 8 Polarization: -47.32 SS G_CDS: -1.25 Total: -48.58 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.16 kcal Total: -78.69 0.96 -77.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000705422347.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.448 kcal (2) G-P(sol) polarization free energy of solvation -78.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds