Wall clock time and date at job start Mon Mar 30 2020 03:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46498 * 119.99479 * 2 1 4 4 C 1.50697 * 109.47267 * 89.99777 * 3 2 1 5 5 H 1.07997 * 119.99984 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00171 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99658 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00106 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46835 * 60.00603 * 8 6 4 10 10 H 1.48504 * 109.47086 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.47533 * 300.00439 * 8 6 4 12 12 C 1.34771 * 120.00286 * 180.27269 * 2 1 3 13 13 O 1.21280 * 120.00145 * 185.29202 * 12 2 1 14 14 C 1.50705 * 120.00119 * 5.29198 * 12 2 1 15 15 H 1.09008 * 109.46896 * 311.12593 * 14 12 2 16 16 O 1.42898 * 109.47327 * 191.12655 * 14 12 2 17 17 N 1.46294 * 114.00110 * 154.27238 * 16 14 12 18 18 C 1.52999 * 109.47119 * 71.12112 * 14 12 2 19 19 C 1.52998 * 117.49791 * 131.89996 * 18 14 12 20 20 C 1.52994 * 117.49737 * 63.23973 * 18 14 12 21 21 H 1.08996 * 109.47459 * 264.70650 * 1 2 3 22 22 H 1.08998 * 109.47068 * 24.71097 * 1 2 3 23 23 H 1.09004 * 109.46929 * 144.70626 * 1 2 3 24 24 H 1.09002 * 109.46829 * 209.99664 * 3 2 1 25 25 H 1.08996 * 109.47381 * 329.99540 * 3 2 1 26 26 H 0.97004 * 119.99937 * 179.97438 * 7 6 4 27 27 H 1.00904 * 111.00189 * 60.95981 * 17 16 14 28 28 H 1.00900 * 111.00283 * 184.91266 * 17 16 14 29 29 H 1.09007 * 115.55074 * 277.56752 * 18 14 12 30 30 H 1.08999 * 117.50049 * 0.02562 * 19 18 14 31 31 H 1.08997 * 117.49577 * 145.01634 * 19 18 14 32 32 H 1.09004 * 117.50160 * 214.97512 * 20 18 14 33 33 H 1.09002 * 117.50093 * 359.97438 * 20 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4485 1.7039 1.4208 5 1 2.0980 1.0959 2.2416 6 6 3.1267 2.8777 1.6727 7 7 3.5539 3.6178 0.6730 8 14 3.4373 3.4173 3.4338 9 1 4.2391 2.3823 4.1345 10 1 4.1798 4.7034 3.4338 11 1 2.1395 3.5956 4.1332 12 6 2.1389 -1.1671 -0.0056 13 8 3.3479 -1.1698 0.0913 14 6 1.3903 -2.4689 -0.1321 15 1 0.5638 -2.4833 0.5785 16 8 2.2753 -3.5562 0.1445 17 7 1.6037 -4.7610 0.6318 18 6 0.8426 -2.6061 -1.5541 19 6 1.0791 -3.9336 -2.2772 20 6 1.8566 -2.6837 -2.6972 21 1 -0.3634 -0.0948 1.0232 22 1 -0.3633 0.9335 -0.4296 23 1 -0.3633 -0.8388 -0.5938 24 1 3.1499 1.1385 -0.5138 25 1 1.6084 2.0284 -0.5139 26 1 4.0307 4.4438 0.8503 27 1 0.9494 -5.1118 -0.0516 28 1 2.2740 -5.4703 0.8878 29 1 -0.0962 -2.0874 -1.7484 30 1 1.6244 -4.7093 -1.7397 31 1 0.2960 -4.2880 -2.9474 32 1 1.5848 -2.2165 -3.6437 33 1 2.9139 -2.6366 -2.4362 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708686942.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:58 Heat of formation + Delta-G solvation = -22.771972 kcal Electronic energy + Delta-G solvation = -16431.043098 eV Core-core repulsion = 13687.227419 eV Total energy + Delta-G solvation = -2743.815679 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.12349 -38.78732 -36.75677 -36.22037 -34.74068 -31.61053 -30.08028 -28.15913 -27.27157 -24.82748 -23.37970 -22.09728 -20.19591 -18.75989 -18.27483 -17.98749 -17.31554 -16.81166 -16.42649 -16.24547 -15.76190 -15.41825 -14.51313 -14.28570 -13.93076 -13.68679 -13.37888 -13.25570 -13.12454 -12.79425 -12.54109 -12.43358 -12.20841 -11.93948 -11.74820 -11.52098 -11.26530 -10.64869 -10.39254 -10.03900 -9.45904 -8.23405 -6.38048 1.35257 1.40130 1.41742 1.48636 1.72207 2.35267 2.52332 2.81814 3.05981 3.56854 3.70671 3.81174 4.07286 4.08628 4.35773 4.43279 4.46570 4.67794 4.71738 4.89378 4.94244 5.00233 5.14833 5.19076 5.19551 5.54250 5.77057 5.86604 6.04862 6.16755 6.66794 6.73117 7.25845 7.42294 8.83545 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.040029 B = 0.006952 C = 0.006558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.324871 B = 4026.674467 C = 4268.426211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.601 5.601 3 C 0.262 3.738 4 C -0.546 4.546 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.258 1.258 12 C 0.505 3.495 13 O -0.589 6.589 14 C 0.114 3.886 15 H 0.116 0.884 16 O -0.245 6.245 17 N -0.665 5.665 18 C -0.187 4.187 19 C -0.142 4.142 20 C -0.189 4.189 21 H 0.060 0.940 22 H 0.079 0.921 23 H 0.100 0.900 24 H -0.006 1.006 25 H 0.032 0.968 26 H 0.268 0.732 27 H 0.357 0.643 28 H 0.378 0.622 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.668 -14.910 -4.729 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.333 5.333 3 C 0.141 3.859 4 C -0.585 4.585 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.567 5.567 8 Si 0.791 3.209 9 H -0.207 1.207 10 H -0.200 1.200 11 H -0.182 1.182 12 C 0.292 3.708 13 O -0.469 6.469 14 C 0.052 3.948 15 H 0.133 0.867 16 O -0.256 6.256 17 N -0.240 5.240 18 C -0.205 4.205 19 C -0.179 4.179 20 C -0.226 4.226 21 H 0.078 0.922 22 H 0.098 0.902 23 H 0.118 0.882 24 H 0.013 0.987 25 H 0.050 0.950 26 H 0.077 0.923 27 H 0.171 0.829 28 H 0.193 0.807 29 H 0.167 0.833 30 H 0.109 0.891 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.033 -14.266 -4.169 18.511 hybrid contribution 1.042 0.181 0.012 1.057 sum -9.992 -14.086 -4.157 17.763 Atomic orbital electron populations 1.22138 0.77648 1.04549 1.02732 1.47997 1.08474 1.05692 1.71114 1.18802 0.91059 0.80008 0.96014 1.21688 1.37092 1.06575 0.93136 0.93133 1.25858 0.94782 0.96369 1.02096 1.70038 1.38843 1.14814 1.33055 0.85476 0.78942 0.77337 0.79116 1.20653 1.20019 1.18244 1.20846 0.87533 0.86039 0.76376 1.90645 1.17101 1.87764 1.51368 1.21260 0.92562 0.83695 0.97270 0.86655 1.90791 1.27898 1.18994 1.87964 1.64209 1.17655 1.01617 1.40498 1.22961 1.01896 1.04925 0.90737 1.23092 1.02789 0.89862 1.02128 1.22895 0.96616 1.03875 0.99194 0.92162 0.90231 0.88211 0.98744 0.95016 0.92310 0.82928 0.80671 0.83335 0.89104 0.84907 0.87059 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.13 9.96 127.77 1.27 3.40 16 2 N -0.60 -26.49 2.86 -851.14 -2.43 -28.92 16 3 C 0.26 14.60 5.16 85.63 0.44 15.05 16 4 C -0.55 -32.71 9.39 25.60 0.24 -32.47 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.47 5.46 84.66 0.46 0.93 16 7 N -0.93 -57.24 13.29 21.45 0.28 -56.95 16 8 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 9 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 12 C 0.51 22.88 6.72 87.66 0.59 23.47 16 13 O -0.59 -33.84 16.17 15.77 0.25 -33.58 16 14 C 0.11 3.65 2.38 29.85 0.07 3.72 16 15 H 0.12 3.18 7.52 -2.38 -0.02 3.16 16 16 O -0.25 -8.23 9.95 -31.35 -0.31 -8.54 16 17 N -0.67 -14.32 10.38 37.02 0.38 -13.93 16 18 C -0.19 -4.38 5.12 -10.80 -0.06 -4.44 16 19 C -0.14 -2.57 9.18 30.62 0.28 -2.29 16 20 C -0.19 -4.93 9.86 30.62 0.30 -4.63 16 21 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.08 2.28 7.83 -2.39 -0.02 2.26 16 23 H 0.10 2.11 4.61 -2.38 -0.01 2.10 16 24 H -0.01 -0.36 7.50 -2.39 -0.02 -0.38 16 25 H 0.03 1.75 7.86 -2.39 -0.02 1.73 16 26 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 27 H 0.36 5.33 7.14 -89.69 -0.64 4.69 16 28 H 0.38 6.56 9.25 -89.69 -0.83 5.73 16 29 H 0.15 2.60 6.35 -2.38 -0.02 2.59 16 30 H 0.09 1.67 5.63 -2.39 -0.01 1.66 16 31 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -80.98 279.11 3.48 -77.50 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -0.33 Total: 13.49 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 3.61 Total: 2.74 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -1.76 Total: -99.80 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -0.06 Total: -42.13 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -80.98 3.48 -77.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708686942.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.724 kcal (2) G-P(sol) polarization free energy of solvation -80.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds