Wall clock time and date at job start Mon Mar 30 2020 03:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00116 * 2 1 4 4 C 1.50704 * 109.47292 * 270.00160 * 3 2 1 5 5 H 1.08000 * 119.99457 * 359.97438 * 4 3 2 6 6 C 1.37870 * 119.99839 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00465 * 0.02562 * 6 4 3 8 8 Si 1.86811 * 119.99703 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.46924 * 60.00411 * 8 6 4 10 10 H 1.48500 * 109.47141 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46984 * 300.00396 * 8 6 4 12 12 C 1.34781 * 119.99869 * 180.02562 * 2 1 3 13 13 O 1.21275 * 119.99943 * 179.97438 * 12 2 1 14 14 C 1.50698 * 119.99953 * 359.97438 * 12 2 1 15 15 H 1.09005 * 109.47412 * 54.99913 * 14 12 2 16 16 O 1.42896 * 109.47193 * 175.00187 * 14 12 2 17 17 N 1.46305 * 114.00147 * 205.00107 * 16 14 12 18 18 C 1.53003 * 109.47204 * 295.00272 * 14 12 2 19 19 C 1.53001 * 117.51964 * 111.28411 * 18 14 12 20 20 C 1.52999 * 60.00190 * 107.47982 * 19 18 14 21 21 H 1.09005 * 109.46804 * 269.99702 * 1 2 3 22 22 H 1.08998 * 109.47201 * 29.99306 * 1 2 3 23 23 H 1.08999 * 109.47632 * 149.99888 * 1 2 3 24 24 H 1.08999 * 109.47001 * 30.00278 * 3 2 1 25 25 H 1.08998 * 109.47144 * 150.00133 * 3 2 1 26 26 H 0.97001 * 120.00213 * 180.02562 * 7 6 4 27 27 H 1.00900 * 110.99892 * 56.04502 * 17 16 14 28 28 H 1.00898 * 110.99983 * 179.97438 * 17 16 14 29 29 H 1.09002 * 115.54973 * 325.58194 * 18 14 12 30 30 H 1.09001 * 117.49733 * 214.97413 * 19 18 14 31 31 H 1.08995 * 117.49577 * 359.97438 * 19 18 14 32 32 H 1.09004 * 117.50150 * 252.51496 * 20 19 18 33 33 H 1.09004 * 117.49681 * 107.48417 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6180 -0.6731 8 14 3.4367 3.4176 -3.4340 9 1 2.1389 3.5950 -4.1335 10 1 4.1793 4.7036 -3.4340 11 1 4.2393 2.3830 -4.1344 12 6 2.1389 -1.1673 -0.0005 13 8 3.3516 -1.1673 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 1 0.6928 -2.4921 -0.8421 16 8 2.3094 -3.5559 -0.1185 17 7 1.7320 -4.7703 -0.6950 18 6 0.6028 -2.6094 1.3071 19 6 -0.9234 -2.5365 1.2286 20 6 -0.2345 -3.8754 1.4999 21 1 -0.3633 -0.0001 1.0277 22 1 -0.3633 0.8900 -0.5137 23 1 -0.3634 -0.8899 -0.5138 24 1 1.6085 2.0283 0.5139 25 1 3.1499 1.1383 0.5138 26 1 4.0295 4.4443 -0.8504 27 1 1.3214 -4.5824 -1.5973 28 1 2.4217 -5.5041 -0.7577 29 1 1.0823 -2.1840 2.1887 30 1 -1.4480 -2.0631 2.0585 31 1 -1.3703 -2.3904 0.2452 32 1 -0.2281 -4.6104 0.6949 33 1 -0.3058 -4.2829 2.5084 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708686950.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:00 Heat of formation + Delta-G solvation = -0.223922 kcal Electronic energy + Delta-G solvation = -16397.871655 eV Core-core repulsion = 13655.033733 eV Total energy + Delta-G solvation = -2742.837922 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55596 -37.26009 -35.72389 -34.61142 -32.59487 -30.27885 -28.28406 -26.82802 -25.48644 -22.80540 -22.21835 -20.93505 -18.70345 -17.33466 -16.50630 -16.33740 -15.75147 -15.24057 -14.90695 -14.68809 -14.32893 -13.71578 -13.37252 -12.56072 -12.28622 -12.16430 -12.05024 -11.80183 -11.36405 -11.19868 -10.93076 -10.66020 -10.54777 -10.33758 -10.16529 -10.12314 -9.64716 -9.10186 -8.63554 -8.43876 -7.65109 -6.04709 -4.09875 2.67413 3.30809 3.33185 3.35902 3.40338 3.88444 4.09918 4.44564 4.79271 4.94592 4.96933 5.02804 5.25856 5.31316 5.48940 5.62636 5.69376 5.76378 5.96543 5.99038 6.17740 6.23637 6.31630 6.76873 6.95646 7.14840 7.43310 7.52972 7.91414 8.22117 8.37567 8.88340 9.06426 9.55071 11.03363 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.037912 B = 0.007013 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.368260 B = 3991.820200 C = 4296.195561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.593 5.593 3 C 0.247 3.753 4 C -0.529 4.529 5 H 0.056 0.944 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.277 1.277 12 C 0.510 3.490 13 O -0.525 6.525 14 C 0.105 3.895 15 H 0.084 0.916 16 O -0.201 6.201 17 N -0.676 5.676 18 C -0.167 4.167 19 C -0.178 4.178 20 C -0.158 4.158 21 H 0.050 0.950 22 H 0.072 0.928 23 H 0.056 0.944 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.264 0.736 27 H 0.335 0.665 28 H 0.364 0.636 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.301 -12.837 1.407 16.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.327 5.327 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.294 3.706 13 O -0.401 6.401 14 C 0.043 3.957 15 H 0.101 0.899 16 O -0.214 6.214 17 N -0.242 5.242 18 C -0.186 4.186 19 C -0.215 4.215 20 C -0.196 4.196 21 H 0.068 0.932 22 H 0.091 0.909 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.145 0.855 28 H 0.178 0.822 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -9.813 -12.646 2.156 16.151 hybrid contribution 0.618 0.506 -1.874 2.037 sum -9.195 -12.140 0.283 15.232 Atomic orbital electron populations 1.21843 0.81270 1.02271 1.00773 1.48022 1.06274 1.07138 1.71276 1.19319 0.92621 0.77744 0.97545 1.21393 1.36789 1.06333 0.92251 0.92550 1.24932 0.95292 0.96359 0.97470 1.69919 1.38253 1.14336 1.30803 0.86552 0.78353 0.77848 0.84626 1.20234 1.21099 1.20210 1.19863 0.87943 0.84415 0.78402 1.90697 1.13623 1.86825 1.48978 1.21492 0.91295 0.86477 0.96463 0.89863 1.90882 1.30655 1.18811 1.81055 1.64454 1.32859 0.97088 1.29784 1.22516 0.92654 1.04329 0.99094 1.23119 0.93698 1.01556 1.03077 1.22967 1.02282 0.91166 1.03136 0.93194 0.90908 0.92559 0.94711 0.93772 0.92606 0.85528 0.82205 0.87492 0.88574 0.88658 0.87301 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 8.71 59.85 0.52 1.84 16 2 N -0.59 -12.87 2.86 -182.95 -0.52 -13.40 16 3 C 0.25 6.56 5.16 -5.19 -0.03 6.54 16 4 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 5 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.51 11.29 7.08 -10.98 -0.08 11.21 16 13 O -0.53 -14.27 16.09 -14.30 -0.23 -14.50 16 14 C 0.11 1.75 2.26 -27.88 -0.06 1.69 16 15 H 0.08 1.21 6.72 -51.93 -0.35 0.86 16 16 O -0.20 -3.48 11.09 -33.79 -0.37 -3.85 16 17 N -0.68 -7.80 9.19 60.35 0.55 -7.25 16 18 C -0.17 -2.34 4.51 -90.61 -0.41 -2.75 16 19 C -0.18 -1.90 7.92 -26.73 -0.21 -2.11 16 20 C -0.16 -1.79 9.91 -26.73 -0.26 -2.05 16 21 H 0.05 0.70 7.36 -51.93 -0.38 0.32 16 22 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 23 H 0.06 0.75 4.55 -51.93 -0.24 0.51 16 24 H 0.03 0.92 8.07 -51.93 -0.42 0.50 16 25 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 26 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 27 H 0.33 3.20 9.06 -39.29 -0.36 2.85 16 28 H 0.36 3.45 9.25 -39.29 -0.36 3.08 16 29 H 0.11 1.65 8.11 -51.93 -0.42 1.23 16 30 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 0.92 6.99 -51.93 -0.36 0.56 16 32 H 0.11 1.21 6.83 -51.93 -0.35 0.85 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 278.60 15.07 4.20 4.20 Total: -1.00 -34.49 278.60 -6.05 -40.55 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -4.44 Total: 2.81 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.95 Total: 0.53 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.77 Total: -46.71 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.60 Total: -18.35 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -34.49 -6.05 -40.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708686950.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.321 kcal (2) G-P(sol) polarization free energy of solvation -34.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds