Wall clock time and date at job start Mon Mar 30 2020 03:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46817 * 2 1 4 4 C 1.53000 * 109.47006 * 240.00037 * 2 1 3 5 5 C 1.50702 * 109.46787 * 174.99657 * 4 2 1 6 6 H 1.08004 * 120.00388 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99984 * 179.97438 * 5 4 2 8 8 N 1.31508 * 119.99796 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99903 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47075 * 90.00489 * 9 7 5 11 11 H 1.48500 * 109.46651 * 210.00356 * 9 7 5 12 12 H 1.48495 * 109.47071 * 330.00461 * 9 7 5 13 13 O 1.42897 * 109.47064 * 120.00375 * 2 1 3 14 14 C 1.42906 * 113.99495 * 270.00162 * 13 2 1 15 15 H 1.09000 * 109.47490 * 30.00028 * 14 13 2 16 16 C 1.52997 * 109.47139 * 269.99769 * 14 13 2 17 17 C 1.53002 * 109.47415 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.46972 * 59.99860 * 17 16 14 19 19 C 1.52997 * 109.47165 * 300.00293 * 18 17 16 20 20 H 1.09002 * 109.47045 * 180.02562 * 19 18 17 21 21 O 1.42900 * 109.47084 * 299.99829 * 19 18 17 22 22 C 1.52999 * 109.47592 * 60.00300 * 19 18 17 23 23 H 1.09002 * 109.47313 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47336 * 300.00037 * 1 2 3 25 25 H 1.09008 * 109.46886 * 60.00188 * 1 2 3 26 26 H 1.08996 * 109.47702 * 295.00234 * 4 2 1 27 27 H 1.09004 * 109.47212 * 55.00518 * 4 2 1 28 28 H 0.97004 * 120.00148 * 179.97438 * 8 7 5 29 29 H 1.09000 * 109.47140 * 300.00473 * 16 14 13 30 30 H 1.09001 * 109.47230 * 59.99617 * 16 14 13 31 31 H 1.08992 * 109.46974 * 180.02562 * 17 16 14 32 32 H 1.08996 * 109.46550 * 300.00288 * 17 16 14 33 33 H 1.09000 * 109.47054 * 60.00300 * 18 17 16 34 34 H 1.09001 * 109.46997 * 180.02562 * 18 17 16 35 35 H 0.96696 * 114.00289 * 300.00124 * 21 19 18 36 36 H 1.08993 * 109.47839 * 180.02562 * 22 19 18 37 37 H 1.09000 * 109.47160 * 59.99666 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0790 -0.0860 -0.5392 7 6 4.2305 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2995 9 14 6.0923 -1.0621 -2.4361 10 1 6.7002 -2.2147 -1.7241 11 1 6.5297 -1.0702 -3.8552 12 1 6.5267 0.2031 -1.7914 13 8 2.0063 -0.6737 1.1667 14 6 2.2000 0.1829 2.2941 15 1 1.4938 1.0118 2.2462 16 6 3.6291 0.7290 2.2800 17 6 3.8367 1.6457 3.4874 18 6 3.6064 0.8527 4.7753 19 6 2.1773 0.3065 4.7893 20 1 2.0131 -0.2581 5.7072 21 8 1.2515 1.3933 4.7271 22 6 1.9697 -0.6102 3.5821 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 1.7516 -1.7715 -1.2057 27 1 1.6054 -0.2617 -2.1370 28 1 4.0609 -2.2445 -4.0349 29 1 4.3353 -0.0999 2.3279 30 1 3.7934 1.2936 1.3622 31 1 4.8547 2.0351 3.4771 32 1 3.1305 2.4745 3.4398 33 1 4.3126 0.0237 4.8228 34 1 3.7539 1.5058 5.6354 35 1 1.3261 2.0162 5.4629 36 1 0.9515 -0.9989 3.5918 37 1 2.6759 -1.4391 3.6296 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712703510.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:45 Heat of formation + Delta-G solvation = -151.342721 kcal Electronic energy + Delta-G solvation = -16805.335577 eV Core-core repulsion = 14159.484995 eV Total energy + Delta-G solvation = -2645.850582 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.48537 -38.55795 -35.82111 -34.96959 -33.02834 -31.07801 -29.96822 -29.28441 -25.23311 -23.49425 -23.25737 -21.72376 -20.72248 -18.51136 -18.03048 -17.51610 -16.77779 -16.39048 -15.60080 -15.51137 -15.02945 -14.75623 -14.38281 -13.88315 -13.80466 -13.43508 -13.28573 -13.26655 -13.10328 -12.66020 -12.60579 -12.45028 -12.33078 -11.96601 -11.80093 -11.56579 -11.32403 -11.23540 -11.04493 -10.61592 -10.56344 -10.07095 -8.17575 -6.25547 1.37174 1.39336 1.49813 2.41446 2.90366 3.17291 3.41814 3.78848 3.93843 4.07178 4.16672 4.22960 4.33736 4.38055 4.42950 4.50866 4.58052 4.64179 4.71531 4.82562 5.00820 5.06993 5.08519 5.15344 5.20855 5.24848 5.27308 5.38364 5.47350 5.47487 5.56223 5.81967 6.26322 6.68909 6.87053 7.01394 7.40873 8.94906 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.029785 B = 0.007595 C = 0.006412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.850395 B = 3685.728222 C = 4365.523739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.101 3.899 3 H 0.043 0.957 4 C 0.027 3.973 5 C -0.521 4.521 6 H 0.056 0.944 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.275 1.275 11 H -0.279 1.279 12 H -0.264 1.264 13 O -0.391 6.391 14 C 0.092 3.908 15 H 0.056 0.944 16 C -0.140 4.140 17 C -0.107 4.107 18 C -0.147 4.147 19 C 0.116 3.884 20 H 0.082 0.918 21 O -0.581 6.581 22 C -0.110 4.110 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.068 0.932 26 H -0.008 1.008 27 H 0.011 0.989 28 H 0.262 0.738 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.393 0.607 36 H 0.065 0.935 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.461 7.190 18.156 19.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.061 0.939 4 C -0.010 4.010 5 C -0.559 4.559 6 H 0.075 0.925 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.205 1.205 12 H -0.188 1.188 13 O -0.311 6.311 14 C 0.034 3.966 15 H 0.074 0.926 16 C -0.178 4.178 17 C -0.144 4.144 18 C -0.185 4.185 19 C 0.057 3.943 20 H 0.100 0.900 21 O -0.389 6.389 22 C -0.148 4.148 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.010 0.990 27 H 0.029 0.971 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.112 0.888 35 H 0.243 0.757 36 H 0.083 0.917 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.583 6.602 17.465 18.738 hybrid contribution 0.971 0.199 -0.309 1.038 sum -0.613 6.801 17.156 18.465 Atomic orbital electron populations 1.22229 0.95607 1.02036 1.02101 1.22084 0.92883 0.94835 0.85886 0.93857 1.19121 0.95682 0.94683 0.91556 1.21512 0.93153 1.33719 1.07513 0.92544 1.25919 1.03533 0.95084 0.95388 1.70090 1.37461 1.37263 1.12901 0.85517 0.79739 0.78846 0.77396 1.20094 1.20485 1.18807 1.87950 1.86682 1.36111 1.20374 1.22040 0.95495 0.92730 0.86309 0.92631 1.22031 0.97403 0.99554 0.98842 1.21378 1.01870 0.97847 0.93312 1.22263 0.97057 1.01043 0.98131 1.21700 0.88302 0.87532 0.96763 0.89997 1.86523 1.59593 1.39701 1.53114 1.21627 1.02556 0.98088 0.92500 0.92907 0.91750 0.91299 0.98963 0.97106 0.92877 0.92809 0.94024 0.91174 0.91397 0.90772 0.88762 0.75711 0.91652 0.90221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.10 9.52 71.98 0.69 -5.41 16 2 C 0.10 4.58 2.45 30.59 0.08 4.66 16 3 H 0.04 1.95 7.62 -2.39 -0.02 1.93 16 4 C 0.03 1.49 4.68 29.85 0.14 1.63 16 5 C -0.52 -31.08 8.88 25.60 0.23 -30.85 16 6 H 0.06 3.29 7.62 -2.91 -0.02 3.27 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -58.87 13.29 21.45 0.28 -58.59 16 9 Si 0.96 46.10 29.54 68.60 2.03 48.13 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 13 O -0.39 -17.56 9.38 -148.98 -1.40 -18.96 16 14 C 0.09 3.23 2.25 30.60 0.07 3.30 16 15 H 0.06 1.97 7.16 -2.39 -0.02 1.95 16 16 C -0.14 -4.72 5.53 30.59 0.17 -4.55 16 17 C -0.11 -2.53 5.78 30.59 0.18 -2.35 16 18 C -0.15 -2.65 5.64 30.59 0.17 -2.48 16 19 C 0.12 2.30 3.77 30.59 0.12 2.42 16 20 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 21 O -0.58 -11.68 11.97 -148.98 -1.78 -13.46 16 22 C -0.11 -3.12 5.31 30.60 0.16 -2.95 16 23 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.06 2.11 7.96 -2.39 -0.02 2.09 16 25 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 26 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 27 H 0.01 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.04 1.59 7.84 -2.39 -0.02 1.57 16 31 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.58 7.68 -2.39 -0.02 1.57 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.39 4.01 9.08 -74.06 -0.67 3.34 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -70.82 297.63 1.94 -68.88 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.35 Total: 10.26 kcal Atomic # 6 Polarization: -38.72 SS G_CDS: 2.46 Total: -36.27 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.28 Total: -58.59 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -3.18 Total: -32.42 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.82 1.94 -68.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712703510.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.458 kcal (2) G-P(sol) polarization free energy of solvation -70.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds