Wall clock time and date at job start Mon Mar 30 2020 03:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 119.99918 * 2 1 4 4 H 1.48508 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46973 * 299.99352 * 3 2 1 6 6 H 1.48494 * 109.47507 * 60.00119 * 3 2 1 7 7 C 1.37875 * 119.99972 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99992 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46848 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46989 * 179.97438 * 10 9 7 12 12 O 1.42898 * 109.47267 * 179.97438 * 11 10 9 13 13 C 1.42903 * 114.00249 * 180.02562 * 12 11 10 14 14 H 1.09000 * 109.46960 * 30.00415 * 13 12 11 15 15 C 1.52993 * 109.47053 * 270.00399 * 13 12 11 16 16 C 1.53008 * 109.46733 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47409 * 60.00092 * 16 15 13 18 18 C 1.53002 * 109.46972 * 300.00085 * 17 16 15 19 19 H 1.09002 * 109.47070 * 179.97438 * 18 17 16 20 20 O 1.42903 * 109.46923 * 300.00077 * 18 17 16 21 21 C 1.52996 * 109.47126 * 150.00009 * 13 12 11 22 22 H 0.97003 * 120.00056 * 0.02562 * 1 2 3 23 23 H 1.08999 * 109.47080 * 60.00004 * 9 7 2 24 24 H 1.09001 * 109.46975 * 300.00042 * 9 7 2 25 25 H 1.08999 * 109.47193 * 60.00176 * 10 9 7 26 26 H 1.09001 * 109.47451 * 299.99853 * 10 9 7 27 27 H 1.09006 * 109.47091 * 60.00088 * 11 10 9 28 28 H 1.08994 * 109.47438 * 300.00077 * 11 10 9 29 29 H 1.09002 * 109.47722 * 59.99911 * 15 13 12 30 30 H 1.09004 * 109.46998 * 299.99383 * 15 13 12 31 31 H 1.09004 * 109.46943 * 299.99499 * 16 15 13 32 32 H 1.09001 * 109.46630 * 179.97438 * 16 15 13 33 33 H 1.08996 * 109.47452 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.47054 * 59.99785 * 17 16 15 35 35 H 0.96700 * 113.99509 * 299.99918 * 20 18 17 36 36 H 1.09004 * 109.47368 * 60.00346 * 21 13 12 37 37 H 1.09001 * 109.47372 * 300.00501 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9871 0.0012 12 8 2.4087 -6.0732 0.0006 13 6 1.7941 -7.3634 0.0005 14 1 0.8342 -7.3085 -0.5130 15 6 1.5753 -7.8240 1.4429 16 6 0.9167 -9.2051 1.4428 17 6 1.8244 -10.2030 0.7209 18 6 2.0433 -9.7422 -0.7216 19 1 2.6904 -10.4529 -1.2358 20 8 0.7848 -9.6697 -1.3946 21 6 2.7023 -8.3609 -0.7213 22 1 -0.4850 0.8401 -0.0004 23 1 0.6246 -2.5571 -0.8897 24 1 0.6239 -2.5566 0.8903 25 1 2.8718 -3.6043 0.8905 26 1 2.8718 -3.6044 -0.8895 27 1 0.8532 -5.0451 -0.8886 28 1 0.8538 -5.0446 0.8913 29 1 0.9283 -7.1134 1.9572 30 1 2.5353 -7.8790 1.9564 31 1 -0.0433 -9.1498 0.9295 32 1 0.7612 -9.5335 2.4705 33 1 1.3555 -11.1869 0.7212 34 1 2.7843 -10.2583 1.2343 35 1 0.3102 -10.5113 -1.4328 36 1 3.6623 -8.4158 -0.2078 37 1 2.8583 -8.0326 -1.7489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712703667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:09 Heat of formation + Delta-G solvation = -134.810960 kcal Electronic energy + Delta-G solvation = -15944.561513 eV Core-core repulsion = 13299.427802 eV Total energy + Delta-G solvation = -2645.133711 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.52449 -37.25072 -34.77439 -33.66042 -31.56581 -30.30378 -29.28126 -26.47953 -23.09872 -22.62133 -22.07632 -20.32431 -19.72407 -17.12848 -16.62169 -16.19792 -15.50009 -15.12494 -14.81363 -14.41946 -14.05219 -13.53667 -13.39679 -12.69300 -12.50230 -12.25704 -12.17345 -11.64383 -11.58478 -11.09542 -11.08583 -10.88502 -10.80123 -10.55629 -10.38288 -10.25911 -9.93490 -9.71707 -9.37860 -9.04159 -8.99724 -8.32257 -5.97284 -3.99257 3.33991 3.41040 3.46093 3.95345 4.06481 4.49793 4.55540 4.63700 4.85695 5.06748 5.16368 5.30274 5.31432 5.38724 5.41622 5.53561 5.71419 5.81551 5.84894 5.86808 5.91821 6.02423 6.10669 6.26836 6.28028 6.34957 6.76311 6.81465 7.15727 7.45453 7.68534 7.75074 7.84027 8.02860 8.46147 9.07758 9.64636 11.14378 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.063636 B = 0.004057 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.898213 B = 6900.007901 C = 6932.275906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.107 4.107 11 C 0.064 3.936 12 O -0.388 6.388 13 C 0.093 3.907 14 H 0.066 0.934 15 C -0.142 4.142 16 C -0.113 4.113 17 C -0.153 4.153 18 C 0.108 3.892 19 H 0.057 0.943 20 O -0.562 6.562 21 C -0.109 4.109 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.043 0.957 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.072 0.928 35 H 0.374 0.626 36 H 0.082 0.918 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.292 -21.628 0.773 21.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.012 4.012 12 O -0.308 6.308 13 C 0.035 3.965 14 H 0.084 0.916 15 C -0.180 4.180 16 C -0.150 4.150 17 C -0.191 4.191 18 C 0.049 3.951 19 H 0.075 0.925 20 O -0.368 6.368 21 C -0.147 4.147 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.221 0.779 36 H 0.100 0.900 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.526 -20.847 0.712 21.011 hybrid contribution -0.052 0.298 0.156 0.340 sum 2.474 -20.549 0.868 20.716 Atomic orbital electron populations 1.69980 1.06074 1.26480 1.51084 1.25030 0.94863 0.99302 0.95350 0.86514 0.80152 0.83681 0.77539 1.19685 1.21016 1.21018 1.21274 0.93171 0.90877 1.50289 0.92481 1.19058 0.93959 0.91123 0.97326 1.21645 0.99608 0.91864 1.01384 1.22791 0.92142 0.86961 0.99316 1.87891 1.34502 1.13389 1.95000 1.21883 0.96418 0.83739 0.94493 0.91601 1.22049 1.01405 0.96594 0.97928 1.21401 0.99171 0.94476 0.99981 1.22281 1.01108 0.98880 0.96841 1.21778 0.85214 0.96905 0.91209 0.92473 1.86583 1.33686 1.37302 1.79184 1.21596 0.98648 0.92525 1.01926 0.93071 0.96479 0.96498 0.92690 0.92655 0.93906 0.94020 0.91576 0.91431 0.91323 0.91981 0.91808 0.90904 0.77931 0.89973 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.48 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.42 5.52 -26.73 -0.15 -2.56 16 11 C 0.06 1.24 5.75 37.16 0.21 1.46 16 12 O -0.39 -7.03 9.99 -35.23 -0.35 -7.38 16 13 C 0.09 1.35 2.46 -26.74 -0.07 1.28 16 14 H 0.07 1.02 7.32 -51.93 -0.38 0.64 16 15 C -0.14 -1.78 5.54 -26.73 -0.15 -1.93 16 16 C -0.11 -1.11 5.78 -26.73 -0.15 -1.26 16 17 C -0.15 -1.25 5.64 -26.73 -0.15 -1.40 16 18 C 0.11 1.01 3.78 -26.70 -0.10 0.91 16 19 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 20 O -0.56 -5.64 11.97 -35.23 -0.42 -6.06 16 21 C -0.11 -1.32 5.32 -26.71 -0.14 -1.47 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 23 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.04 0.78 7.87 -51.93 -0.41 0.37 16 29 H 0.07 0.89 7.87 -51.93 -0.41 0.48 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.70 7.68 -51.93 -0.40 0.31 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.37 2.08 9.08 45.56 0.41 2.49 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -32.22 298.95 -7.59 -39.81 By element: Atomic # 1 Polarization: 3.05 SS G_CDS: -5.79 Total: -2.75 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: -1.25 Total: -18.46 kcal Atomic # 7 Polarization: -27.48 SS G_CDS: 0.74 Total: -26.74 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.77 Total: -13.44 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.22 -7.59 -39.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712703667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.999 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds