Wall clock time and date at job start Mon Mar 30 2020 03:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48504 * 109.47186 * 269.99904 * 3 2 1 5 5 H 1.48502 * 109.47080 * 29.99711 * 3 2 1 6 6 H 1.48498 * 109.47504 * 149.99400 * 3 2 1 7 7 C 1.37883 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99546 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99797 * 180.02562 * 7 2 1 10 10 C 1.53005 * 109.46809 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47015 * 179.97438 * 10 9 7 12 12 O 1.42899 * 109.46966 * 180.02562 * 11 10 9 13 13 C 1.42906 * 114.00172 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47232 * 29.99319 * 13 12 11 15 15 C 1.53006 * 109.46748 * 269.99873 * 13 12 11 16 16 C 1.52999 * 109.46626 * 179.97438 * 15 13 12 17 17 C 1.52997 * 109.46991 * 60.00378 * 16 15 13 18 18 C 1.52996 * 109.47131 * 299.99311 * 17 16 15 19 19 H 1.08996 * 109.47452 * 300.00000 * 18 17 16 20 20 O 1.42911 * 109.47245 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47321 * 149.99974 * 13 12 11 22 22 H 0.96994 * 120.00467 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.47553 * 60.00394 * 9 7 2 24 24 H 1.09001 * 109.47153 * 299.99732 * 9 7 2 25 25 H 1.09006 * 109.47155 * 60.00093 * 10 9 7 26 26 H 1.08992 * 109.47251 * 299.99887 * 10 9 7 27 27 H 1.08994 * 109.47195 * 60.00444 * 11 10 9 28 28 H 1.09001 * 109.47305 * 299.99908 * 11 10 9 29 29 H 1.08993 * 109.46955 * 299.99993 * 15 13 12 30 30 H 1.09000 * 109.47050 * 59.99822 * 15 13 12 31 31 H 1.09002 * 109.46719 * 180.02562 * 16 15 13 32 32 H 1.08993 * 109.47839 * 299.99931 * 16 15 13 33 33 H 1.09001 * 109.47289 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.47611 * 59.99933 * 17 16 15 35 35 H 0.96698 * 113.99178 * 59.99871 * 20 18 17 36 36 H 1.09002 * 109.47153 * 299.99798 * 21 13 12 37 37 H 1.08996 * 109.46952 * 59.99969 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5515 -2.6364 0.0009 12 8 6.0279 -3.9837 0.0002 13 6 7.4525 -4.0965 0.0007 14 1 7.8848 -3.2383 0.5152 15 6 7.9614 -4.1359 -1.4417 16 6 9.4866 -4.2561 -1.4412 17 6 9.8966 -5.5419 -0.7205 18 6 9.3877 -5.5026 0.7218 19 1 9.8197 -4.6442 1.2363 20 8 9.7712 -6.7034 1.3952 21 6 7.8620 -5.3826 0.7212 22 1 -0.4850 0.8400 -0.0004 23 1 3.8745 -0.6800 0.8911 24 1 3.8752 -0.6803 -0.8889 25 1 3.6586 -3.1502 -0.8893 26 1 3.6580 -3.1505 0.8907 27 1 5.9149 -2.1227 0.8909 28 1 5.9149 -2.1225 -0.8890 29 1 7.5291 -4.9940 -1.9562 30 1 7.6696 -3.2197 -1.9550 31 1 9.8492 -4.2836 -2.4688 32 1 9.9187 -3.3977 -0.9268 33 1 10.9832 -5.6278 -0.7205 34 1 9.4647 -6.4003 -1.2349 35 1 10.7270 -6.8446 1.4335 36 1 7.4994 -5.3546 1.7488 37 1 7.4297 -6.2407 0.2067 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712703671.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:13 Heat of formation + Delta-G solvation = -155.330379 kcal Electronic energy + Delta-G solvation = -15846.828399 eV Core-core repulsion = 13200.804900 eV Total energy + Delta-G solvation = -2646.023499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.43965 -38.48086 -36.32450 -35.52046 -33.71976 -31.30030 -30.13831 -28.74777 -24.66207 -23.47537 -23.10188 -22.00398 -20.87317 -18.96687 -18.43887 -17.38911 -16.80725 -16.42764 -16.16166 -15.52111 -15.24444 -15.07268 -14.71101 -14.53904 -14.14708 -13.64320 -13.48926 -13.35828 -12.84480 -12.67460 -12.36942 -12.03727 -11.93676 -11.90709 -11.73805 -11.59630 -11.47158 -11.42688 -11.26274 -10.82256 -10.77355 -10.37408 -8.30041 -6.35710 1.36751 1.39507 1.51548 2.36696 2.52812 3.04852 3.40470 3.67197 3.90490 3.96234 4.10342 4.11991 4.20677 4.27348 4.34900 4.40494 4.48674 4.54770 4.59939 4.75012 4.84810 4.97930 5.01975 5.03672 5.08748 5.13578 5.19407 5.27681 5.40540 5.45602 5.54080 5.63142 6.25304 6.35510 6.72510 6.91432 7.28780 8.87170 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.054775 B = 0.004250 C = 0.004127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 511.056219 B = 6586.572164 C = 6782.248411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.001 3.999 3 Si 0.957 3.043 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.242 1.242 7 C -0.539 4.539 8 H 0.027 0.973 9 C -0.006 4.006 10 C -0.096 4.096 11 C 0.072 3.928 12 O -0.405 6.405 13 C 0.088 3.912 14 H 0.073 0.927 15 C -0.144 4.144 16 C -0.110 4.110 17 C -0.147 4.147 18 C 0.113 3.887 19 H 0.070 0.930 20 O -0.586 6.586 21 C -0.112 4.112 22 H 0.267 0.733 23 H 0.027 0.973 24 H 0.026 0.974 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.397 0.603 36 H 0.061 0.939 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.038 -7.249 -1.089 27.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.196 4.196 3 Si 0.780 3.220 4 H -0.188 1.188 5 H -0.209 1.209 6 H -0.165 1.165 7 C -0.577 4.577 8 H 0.045 0.955 9 C -0.044 4.044 10 C -0.134 4.134 11 C -0.004 4.004 12 O -0.325 6.325 13 C 0.031 3.969 14 H 0.091 0.909 15 C -0.182 4.182 16 C -0.147 4.147 17 C -0.185 4.185 18 C 0.054 3.946 19 H 0.088 0.912 20 O -0.395 6.395 21 C -0.150 4.150 22 H 0.076 0.924 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.248 0.752 36 H 0.080 0.920 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 25.133 -7.372 -1.024 26.212 hybrid contribution -0.014 0.714 -0.084 0.719 sum 25.120 -6.658 -1.108 26.011 Atomic orbital electron populations 1.70078 1.08498 1.28342 1.52448 1.26114 0.95712 1.03875 0.93852 0.85559 0.79539 0.77539 0.79410 1.18848 1.20905 1.16528 1.21480 0.92173 0.93145 1.50896 0.95495 1.19434 0.93909 0.93915 0.97115 1.21285 0.93207 0.97827 1.01109 1.22577 0.94305 0.82847 1.00714 1.87896 1.21886 1.27467 1.95227 1.22106 0.80687 0.97841 0.96280 0.90942 1.22084 0.97341 1.02585 0.96181 1.21415 0.93484 0.97947 1.01862 1.22264 1.02239 0.98651 0.95347 1.21658 0.93148 0.87360 0.92433 0.91162 1.86481 1.30353 1.43254 1.79411 1.21483 0.95490 0.97287 1.00736 0.92385 0.95519 0.95569 0.93297 0.93394 0.92457 0.92287 0.92097 0.91521 0.89974 0.90496 0.89070 0.91981 0.75243 0.91990 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.05 13.96 21.45 0.30 -60.75 16 2 C 0.00 0.06 5.47 84.66 0.46 0.52 16 3 Si 0.96 44.20 27.47 68.60 1.88 46.08 16 4 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.24 -10.18 6.54 99.48 0.65 -9.53 16 7 C -0.54 -32.19 9.66 25.60 0.25 -31.95 16 8 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 9 C -0.01 -0.30 4.04 29.85 0.12 -0.18 16 10 C -0.10 -4.05 5.52 30.59 0.17 -3.88 16 11 C 0.07 2.36 5.75 71.98 0.41 2.77 16 12 O -0.40 -13.18 9.99 -148.98 -1.49 -14.67 16 13 C 0.09 2.12 2.61 30.60 0.08 2.20 16 14 H 0.07 1.53 7.79 -2.39 -0.02 1.52 16 15 C -0.14 -2.91 5.54 30.60 0.17 -2.74 16 16 C -0.11 -1.49 5.92 30.59 0.18 -1.30 16 17 C -0.15 -1.91 5.54 30.59 0.17 -1.74 16 18 C 0.11 1.86 3.47 30.61 0.11 1.96 16 19 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 20 O -0.59 -10.08 13.32 -148.98 -1.98 -12.07 16 21 C -0.11 -2.60 5.23 30.61 0.16 -2.44 16 22 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 23 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 24 H 0.03 1.17 7.57 -2.39 -0.02 1.15 16 25 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 28 H 0.06 1.75 7.87 -2.39 -0.02 1.73 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.37 7.87 -2.39 -0.02 1.35 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.40 2.85 9.08 -74.06 -0.67 2.18 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -71.25 297.42 1.28 -69.97 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: 0.29 Total: 8.21 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 2.28 Total: -36.78 kcal Atomic # 7 Polarization: -61.05 SS G_CDS: 0.30 Total: -60.75 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -3.47 Total: -26.73 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Total: -71.25 1.28 -69.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712703671.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.362 kcal (2) G-P(sol) polarization free energy of solvation -71.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds