Wall clock time and date at job start Mon Mar 30 2020 03:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.48276 * 300.00161 * 5 2 1 7 7 C 1.53098 * 109.48198 * 60.02161 * 5 2 1 8 8 C 1.53173 * 109.16596 * 177.58898 * 7 5 2 9 9 O 1.42901 * 109.54006 * 62.89437 * 8 7 5 10 10 C 1.50701 * 109.54172 * 183.06355 * 8 7 5 11 11 H 1.07995 * 120.00133 * 0.02562 * 10 8 7 12 12 C 1.37876 * 119.99806 * 180.02562 * 10 8 7 13 13 N 1.31511 * 120.00190 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99969 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46889 * 60.00358 * 14 12 10 16 16 H 1.48505 * 109.46696 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47110 * 300.00309 * 14 12 10 18 18 C 1.53172 * 109.03810 * 303.02324 * 8 7 5 19 19 C 1.53085 * 109.16546 * 56.98080 * 18 8 7 20 20 O 1.42905 * 109.42517 * 302.39536 * 19 18 8 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 27 27 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 1.08997 * 109.52202 * 297.50178 * 7 5 2 31 31 H 1.09006 * 109.51791 * 57.68412 * 7 5 2 32 32 H 0.96702 * 114.00194 * 179.97438 * 9 8 7 33 33 H 0.97008 * 120.00297 * 179.97438 * 13 12 10 34 34 H 1.09011 * 109.51983 * 176.88654 * 18 8 7 35 35 H 1.08991 * 109.52554 * 297.00695 * 18 8 7 36 36 H 1.09009 * 109.48412 * 62.37009 * 19 18 8 37 37 H 1.08997 * 109.48181 * 182.40652 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6768 -1.7490 -1.2493 7 6 1.5303 0.0005 -2.4994 8 6 2.0941 -0.6913 -3.7443 9 8 1.6104 -2.0346 -3.8050 10 6 1.6588 0.0573 -4.9776 11 1 1.0420 0.9389 -4.8846 12 6 2.0480 -0.3833 -6.2248 13 7 2.7986 -1.4571 -6.3381 14 14 1.5078 0.5443 -7.7537 15 1 2.0147 1.9387 -7.6915 16 1 2.0553 -0.1277 -8.9595 17 1 0.0246 0.5595 -7.8252 18 6 3.6235 -0.7006 -3.6613 19 6 4.0524 -1.3953 -2.3664 20 8 3.4691 -0.7209 -1.2496 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 -1.7488 1.2493 28 1 3.1300 -0.7207 1.2495 29 1 1.6766 -0.2073 2.1393 30 1 0.4413 -0.0374 -2.5233 31 1 1.8593 1.0395 -2.4796 32 1 1.9281 -2.5329 -4.5705 33 1 3.0721 -1.7674 -7.2156 34 1 4.0314 -1.2399 -4.5164 35 1 3.9948 0.3241 -3.6663 36 1 3.7156 -2.4319 -2.3811 37 1 5.1386 -1.3670 -2.2812 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721528006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:23 Heat of formation + Delta-G solvation = -121.703502 kcal Electronic energy + Delta-G solvation = -17553.819736 eV Core-core repulsion = 14909.254408 eV Total energy + Delta-G solvation = -2644.565329 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24006 -36.26317 -34.97657 -32.08629 -30.52285 -29.30353 -26.97676 -26.90209 -25.84050 -22.95172 -22.27685 -19.04300 -18.35610 -16.83363 -15.34967 -15.32090 -14.98905 -14.30383 -14.06407 -13.75864 -13.36281 -13.10849 -12.87691 -12.37275 -12.07950 -11.89969 -11.51126 -11.41339 -11.15834 -10.96427 -10.90553 -10.74279 -10.46587 -10.37710 -10.22094 -10.07278 -9.86480 -9.57968 -9.18193 -8.63055 -8.55001 -7.89658 -6.15759 -4.26907 3.24193 3.28894 3.32108 4.31475 4.49638 5.07719 5.18091 5.23113 5.42820 5.83839 5.88373 5.93197 6.01842 6.06996 6.11723 6.13520 6.16522 6.24958 6.30555 6.36020 6.40568 6.44113 6.53985 6.66052 6.75042 6.76947 6.85379 7.02604 7.24993 7.57097 7.66102 7.90728 8.16188 8.19163 8.75147 9.41182 9.55296 10.86701 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.039073 B = 0.008541 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.427887 B = 3277.492640 C = 3559.832682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.135 4.135 5 C 0.107 3.893 6 H 0.055 0.945 7 C -0.124 4.124 8 C 0.251 3.749 9 O -0.593 6.593 10 C -0.533 4.533 11 H 0.058 0.942 12 C 0.069 3.931 13 N -0.901 5.901 14 Si 0.899 3.101 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.169 4.169 19 C 0.065 3.935 20 O -0.390 6.390 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.379 0.621 33 H 0.267 0.733 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 1.442 9.202 9.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.194 4.194 4 C -0.192 4.192 5 C 0.049 3.951 6 H 0.073 0.927 7 C -0.162 4.162 8 C 0.211 3.789 9 O -0.402 6.402 10 C -0.571 4.571 11 H 0.076 0.924 12 C -0.132 4.132 13 N -0.541 5.541 14 Si 0.726 3.274 15 H -0.202 1.202 16 H -0.211 1.211 17 H -0.201 1.201 18 C -0.207 4.207 19 C -0.012 4.012 20 O -0.310 6.310 21 H 0.073 0.927 22 H 0.081 0.919 23 H 0.071 0.929 24 H 0.063 0.937 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.229 0.771 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.605 1.602 9.762 9.911 hybrid contribution -0.047 0.211 -1.795 1.808 sum -0.653 1.813 7.967 8.196 Atomic orbital electron populations 1.21891 0.94389 1.01829 1.01711 1.20558 0.95027 0.96002 0.94687 1.21831 1.01736 0.94959 1.00865 1.21785 1.01705 0.99504 0.96198 1.21985 0.81144 0.98239 0.93686 0.92711 1.22197 1.00494 0.99217 0.94287 1.18598 0.88317 0.80688 0.91281 1.86093 1.75997 1.26851 1.51308 1.21727 1.31916 1.12132 0.91343 0.92377 1.24999 0.94033 0.94974 0.99209 1.69575 1.36421 1.23646 1.24506 0.86550 0.79078 0.79920 0.81828 1.20208 1.21149 1.20148 1.22770 1.00656 1.00281 0.97009 1.22573 0.96145 0.95450 0.87016 1.87709 1.19510 1.77993 1.45752 0.92736 0.91911 0.92902 0.93717 0.92025 0.92331 0.93226 0.92026 0.93484 0.91905 0.91398 0.77065 0.92310 0.88444 0.93156 0.93908 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.12 37.16 0.30 -1.72 16 2 C -0.06 -0.99 0.63 -154.51 -0.10 -1.09 16 3 C -0.14 -2.07 7.98 37.16 0.30 -1.78 16 4 C -0.13 -1.91 8.33 37.16 0.31 -1.60 16 5 C 0.11 2.09 1.76 -26.68 -0.05 2.04 16 6 H 0.05 1.15 7.82 -51.93 -0.41 0.75 16 7 C -0.12 -2.71 3.65 -26.59 -0.10 -2.81 16 8 C 0.25 6.23 0.67 -91.59 -0.06 6.17 16 9 O -0.59 -15.34 11.92 -35.23 -0.42 -15.76 16 10 C -0.53 -14.43 8.25 -34.44 -0.28 -14.72 16 11 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 12 C 0.07 1.83 5.22 -17.82 -0.09 1.74 16 13 N -0.90 -23.99 9.75 55.43 0.54 -23.45 16 14 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 15 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 16 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 C -0.17 -3.99 4.86 -26.60 -0.13 -4.12 16 19 C 0.06 1.33 6.69 37.20 0.25 1.58 16 20 O -0.39 -7.91 9.06 -35.23 -0.32 -8.23 16 21 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.06 0.94 6.49 -51.93 -0.34 0.61 16 23 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 26 H 0.06 0.92 6.38 -51.93 -0.33 0.59 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.36 6.57 -51.93 -0.34 1.02 16 31 H 0.07 1.46 6.31 -51.93 -0.33 1.14 16 32 H 0.38 10.03 7.14 45.56 0.33 10.35 16 33 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.10 2.47 6.22 -51.92 -0.32 2.15 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.04 0.90 7.82 -51.92 -0.41 0.49 16 37 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -27.09 280.91 -6.08 -33.17 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.45 Total: 10.53 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: 0.35 Total: -16.30 kcal Atomic # 7 Polarization: -23.99 SS G_CDS: 0.54 Total: -23.45 kcal Atomic # 8 Polarization: -23.26 SS G_CDS: -0.74 Total: -23.99 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -27.09 -6.08 -33.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721528006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.530 kcal (2) G-P(sol) polarization free energy of solvation -27.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds