Wall clock time and date at job start Mon Mar 30 2020 03:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52999 * 109.47317 * 119.99511 * 2 1 3 5 5 C 1.52992 * 109.47482 * 239.99653 * 2 1 3 6 6 H 1.09002 * 109.48276 * 300.00161 * 5 2 1 7 7 C 1.53098 * 109.48198 * 60.02161 * 5 2 1 8 8 C 1.53173 * 109.16596 * 177.58898 * 7 5 2 9 9 O 1.42901 * 109.54006 * 62.89437 * 8 7 5 10 10 C 1.50701 * 109.54172 * 183.06355 * 8 7 5 11 11 H 1.07995 * 120.00133 * 0.02562 * 10 8 7 12 12 C 1.37876 * 119.99806 * 180.02562 * 10 8 7 13 13 N 1.31511 * 120.00190 * 0.02562 * 12 10 8 14 14 Si 1.86806 * 119.99969 * 179.97438 * 12 10 8 15 15 H 1.48496 * 109.46889 * 60.00358 * 14 12 10 16 16 H 1.48505 * 109.46696 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47110 * 300.00309 * 14 12 10 18 18 C 1.53172 * 109.03810 * 303.02324 * 8 7 5 19 19 C 1.53085 * 109.16546 * 56.98080 * 18 8 7 20 20 O 1.42905 * 109.42517 * 302.39536 * 19 18 8 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 26 26 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 27 27 H 1.09002 * 109.46716 * 60.00091 * 4 2 1 28 28 H 1.09000 * 109.47486 * 180.02562 * 4 2 1 29 29 H 1.09001 * 109.47362 * 300.00732 * 4 2 1 30 30 H 1.08997 * 109.52202 * 297.50178 * 7 5 2 31 31 H 1.09006 * 109.51791 * 57.68412 * 7 5 2 32 32 H 0.96702 * 114.00194 * 179.97438 * 9 8 7 33 33 H 0.97008 * 120.00297 * 179.97438 * 13 12 10 34 34 H 1.09011 * 109.51983 * 176.88654 * 18 8 7 35 35 H 1.08991 * 109.52554 * 297.00695 * 18 8 7 36 36 H 1.09009 * 109.48412 * 62.37009 * 19 18 8 37 37 H 1.08997 * 109.48181 * 182.40652 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 2.0400 -0.7213 -1.2491 6 1 1.6768 -1.7490 -1.2493 7 6 1.5303 0.0005 -2.4994 8 6 2.0941 -0.6913 -3.7443 9 8 1.6104 -2.0346 -3.8050 10 6 1.6588 0.0573 -4.9776 11 1 1.0420 0.9389 -4.8846 12 6 2.0480 -0.3833 -6.2248 13 7 2.7986 -1.4571 -6.3381 14 14 1.5078 0.5443 -7.7537 15 1 2.0147 1.9387 -7.6915 16 1 2.0553 -0.1277 -8.9595 17 1 0.0246 0.5595 -7.8252 18 6 3.6235 -0.7006 -3.6613 19 6 4.0524 -1.3953 -2.3664 20 8 3.4691 -0.7209 -1.2496 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.6767 1.9563 0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9564 -0.8900 27 1 1.6767 -1.7488 1.2493 28 1 3.1300 -0.7207 1.2495 29 1 1.6766 -0.2073 2.1393 30 1 0.4413 -0.0374 -2.5233 31 1 1.8593 1.0395 -2.4796 32 1 1.9281 -2.5329 -4.5705 33 1 3.0721 -1.7674 -7.2156 34 1 4.0314 -1.2399 -4.5164 35 1 3.9948 0.3241 -3.6663 36 1 3.7156 -2.4319 -2.3811 37 1 5.1386 -1.3670 -2.2812 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721528006.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:23 Heat of formation + Delta-G solvation = -138.800958 kcal Electronic energy + Delta-G solvation = -17554.561138 eV Core-core repulsion = 14909.254408 eV Total energy + Delta-G solvation = -2645.306730 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.87865 -37.90063 -36.63708 -34.15196 -32.40230 -30.97273 -28.29086 -28.09724 -27.62628 -24.61777 -24.07889 -20.84545 -19.84716 -18.76446 -17.11353 -16.98532 -16.82823 -16.08469 -15.67159 -15.33782 -14.83309 -14.58073 -14.47617 -14.06390 -13.70758 -13.37538 -13.03415 -12.86165 -12.74791 -12.57976 -12.52479 -12.33463 -12.18747 -11.96545 -11.85082 -11.70189 -11.47446 -11.29691 -10.82782 -10.60729 -10.42018 -9.83289 -8.17907 -6.37577 1.39078 1.39787 1.47570 2.36946 2.95228 3.01883 3.84813 3.93419 4.10056 4.23576 4.35000 4.44861 4.45384 4.50935 4.65651 4.70173 4.82100 4.85913 4.92412 4.99267 5.01809 5.08542 5.13601 5.18613 5.25847 5.33566 5.38171 5.50927 5.59045 5.61194 5.73254 5.95652 6.16999 6.47117 6.67275 7.33333 7.46239 8.81791 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.039073 B = 0.008541 C = 0.007864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.427887 B = 3277.492640 C = 3559.832682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.062 4.062 3 C -0.134 4.134 4 C -0.130 4.130 5 C 0.110 3.890 6 H 0.038 0.962 7 C -0.117 4.117 8 C 0.236 3.764 9 O -0.598 6.598 10 C -0.563 4.563 11 H 0.049 0.951 12 C 0.029 3.971 13 N -0.912 5.912 14 Si 0.957 3.043 15 H -0.274 1.274 16 H -0.279 1.279 17 H -0.276 1.276 18 C -0.161 4.161 19 C 0.070 3.930 20 O -0.387 6.387 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.046 0.954 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.373 0.627 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.706 2.051 10.300 10.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.063 4.063 3 C -0.191 4.191 4 C -0.187 4.187 5 C 0.052 3.948 6 H 0.056 0.944 7 C -0.155 4.155 8 C 0.197 3.803 9 O -0.406 6.406 10 C -0.601 4.601 11 H 0.067 0.933 12 C -0.171 4.171 13 N -0.553 5.553 14 Si 0.782 3.218 15 H -0.199 1.199 16 H -0.204 1.204 17 H -0.201 1.201 18 C -0.199 4.199 19 C -0.006 4.006 20 O -0.307 6.307 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.222 0.778 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.809 2.211 10.873 11.125 hybrid contribution 0.010 0.010 -2.156 2.156 sum -0.799 2.221 8.716 9.030 Atomic orbital electron populations 1.21885 0.93140 1.02051 1.02526 1.20616 0.95997 0.96154 0.93488 1.21803 1.01031 0.94546 1.01701 1.21745 1.01105 0.99685 0.96193 1.22039 0.80633 0.97485 0.94604 0.94428 1.22112 1.00108 0.99031 0.94249 1.18836 0.89294 0.80083 0.92094 1.86091 1.76225 1.27430 1.50890 1.22007 1.32696 1.12520 0.92883 0.93260 1.25670 0.93996 0.95771 1.01617 1.69664 1.36354 1.24124 1.25119 0.85640 0.78537 0.78850 0.78743 1.19895 1.20373 1.20107 1.22605 0.99782 0.99599 0.97950 1.22522 0.97704 0.94663 0.85745 1.87730 1.19986 1.77781 1.45166 0.92856 0.93155 0.90025 0.90850 0.93078 0.93529 0.93176 0.92923 0.90798 0.92365 0.91508 0.77774 0.92110 0.90451 0.94188 0.94435 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.12 71.98 0.58 -3.10 16 2 C -0.06 -1.86 0.63 -52.18 -0.03 -1.89 16 3 C -0.13 -3.76 7.98 71.98 0.57 -3.19 16 4 C -0.13 -3.34 8.33 71.98 0.60 -2.74 16 5 C 0.11 4.22 1.76 30.62 0.05 4.27 16 6 H 0.04 1.58 7.82 -2.39 -0.02 1.56 16 7 C -0.12 -5.14 3.65 30.68 0.11 -5.03 16 8 C 0.24 11.92 0.67 -11.42 -0.01 11.92 16 9 O -0.60 -31.51 11.92 -148.98 -1.78 -33.28 16 10 C -0.56 -30.95 8.25 25.60 0.21 -30.74 16 11 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 12 C 0.03 1.56 5.22 84.65 0.44 2.01 16 13 N -0.91 -48.96 9.75 21.45 0.21 -48.75 16 14 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 18 C -0.16 -7.68 4.86 30.68 0.15 -7.53 16 19 C 0.07 2.86 6.69 72.01 0.48 3.34 16 20 O -0.39 -15.34 9.06 -148.98 -1.35 -16.69 16 21 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.05 1.45 6.49 -2.39 -0.02 1.43 16 23 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.53 7.68 -2.39 -0.02 1.52 16 26 H 0.05 1.41 6.38 -2.39 -0.02 1.39 16 27 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 29 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 2.56 6.57 -2.39 -0.02 2.54 16 31 H 0.07 2.91 6.31 -2.38 -0.02 2.89 16 32 H 0.37 20.21 7.14 -74.06 -0.53 19.68 16 33 H 0.27 13.77 8.31 -92.70 -0.77 13.00 16 34 H 0.08 4.00 6.22 -2.38 -0.01 3.98 16 35 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.04 1.57 7.82 -2.38 -0.02 1.55 16 37 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -57.17 280.91 2.79 -54.38 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.51 Total: 32.29 kcal Atomic # 6 Polarization: -35.85 SS G_CDS: 3.17 Total: -32.68 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: 0.21 Total: -48.75 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -3.13 Total: -49.98 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -57.17 2.79 -54.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721528006.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.425 kcal (2) G-P(sol) polarization free energy of solvation -57.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds