Wall clock time and date at job start Mon Mar 30 2020 03:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47355 * 2 1 4 4 C 1.52998 * 109.47223 * 239.99997 * 2 1 3 5 5 C 1.53001 * 109.46997 * 119.99945 * 2 1 3 6 6 H 1.08999 * 109.47927 * 180.02562 * 5 2 1 7 7 C 1.53098 * 109.47892 * 60.00054 * 5 2 1 8 8 C 1.53177 * 109.21356 * 182.36258 * 7 5 2 9 9 O 1.42898 * 109.54804 * 297.14639 * 8 7 5 10 10 C 1.50707 * 109.54266 * 176.87702 * 8 7 5 11 11 H 1.08000 * 120.00084 * 0.02562 * 10 8 7 12 12 C 1.37878 * 119.99753 * 179.97438 * 10 8 7 13 13 N 1.31511 * 119.99965 * 0.02562 * 12 10 8 14 14 Si 1.86801 * 119.99824 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.47026 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.46882 * 120.00154 * 14 12 10 17 17 H 1.48495 * 109.47288 * 240.00583 * 14 12 10 18 18 C 1.53311 * 108.96735 * 56.95427 * 8 7 5 19 19 C 1.53100 * 109.19441 * 303.05955 * 18 8 7 20 20 O 1.42899 * 109.49071 * 300.05348 * 5 2 1 21 21 H 1.09003 * 109.46988 * 299.99800 * 1 2 3 22 22 H 1.08997 * 109.46872 * 60.00019 * 1 2 3 23 23 H 1.08997 * 109.47008 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47636 * 179.97438 * 3 2 1 25 25 H 1.08993 * 109.47468 * 300.00163 * 3 2 1 26 26 H 1.09002 * 109.47366 * 59.99875 * 3 2 1 27 27 H 1.09008 * 109.46889 * 300.00211 * 4 2 1 28 28 H 1.09001 * 109.46969 * 59.99736 * 4 2 1 29 29 H 1.09000 * 109.47277 * 180.02562 * 4 2 1 30 30 H 1.09002 * 109.52244 * 302.30197 * 7 5 2 31 31 H 1.09004 * 109.52508 * 62.42726 * 7 5 2 32 32 H 0.96696 * 114.00685 * 180.02562 * 9 8 7 33 33 H 0.97006 * 119.99756 * 179.97438 * 13 12 10 34 34 H 1.08992 * 109.51110 * 183.14032 * 18 8 7 35 35 H 1.09005 * 109.50614 * 62.96974 * 18 8 7 36 36 H 1.09002 * 109.47233 * 297.62202 * 19 18 8 37 37 H 1.08999 * 109.48998 * 177.59482 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 3.1300 -0.7209 1.2496 7 6 1.5298 -2.1647 1.2494 8 6 1.9944 -2.8634 2.5309 9 8 3.4221 -2.9196 2.5542 10 6 1.4323 -4.2610 2.5753 11 1 0.8063 -4.6171 1.7704 12 6 1.7180 -5.0854 3.6429 13 7 2.4807 -4.6520 4.6227 14 14 1.0207 -6.8175 3.6982 15 1 0.1996 -7.0596 2.4847 16 1 2.1347 -7.7983 3.7453 17 1 0.1738 -6.9718 4.9082 18 6 1.4931 -2.0682 3.7420 19 6 2.0046 -0.6284 3.6455 20 8 1.5628 -0.0486 2.4163 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 3.1300 1.4424 0.0005 25 1 1.6768 1.9563 -0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6766 -1.7490 -1.2492 28 1 1.6767 -0.2074 -2.1392 29 1 3.1300 -0.7216 -1.2490 30 1 0.4405 -2.1660 1.2082 31 1 1.9277 -2.6919 0.3823 32 1 3.7861 -3.3507 3.3395 33 1 2.6814 -5.2319 5.3740 34 1 1.8656 -2.5265 4.6580 35 1 0.4030 -2.0675 3.7511 36 1 3.0942 -0.6270 3.6772 37 1 1.6158 -0.0475 4.4818 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721528008.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:25 Heat of formation + Delta-G solvation = -138.948006 kcal Electronic energy + Delta-G solvation = -17553.563777 eV Core-core repulsion = 14908.250671 eV Total energy + Delta-G solvation = -2645.313106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.87540 -37.89775 -36.63851 -34.15518 -32.40145 -30.97117 -28.29239 -28.09758 -27.62860 -24.61893 -24.07711 -20.84793 -19.84755 -18.76940 -17.11830 -16.98580 -16.82999 -16.08161 -15.66822 -15.33943 -14.83534 -14.58098 -14.47743 -14.06759 -13.70663 -13.38542 -13.03370 -12.88297 -12.73845 -12.57274 -12.51571 -12.32461 -12.20228 -11.95626 -11.85136 -11.69943 -11.47555 -11.29654 -10.82901 -10.61452 -10.41911 -9.83059 -8.18404 -6.37844 1.36354 1.39810 1.50112 2.36774 2.95186 3.01531 3.84749 3.93415 4.09993 4.23513 4.34834 4.44797 4.45355 4.50922 4.65558 4.70136 4.82086 4.85932 4.92409 4.99212 5.01801 5.08533 5.13561 5.18601 5.25860 5.33514 5.38128 5.51035 5.59157 5.61200 5.73003 5.95502 6.16753 6.47098 6.67496 7.33249 7.46045 8.81686 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.039051 B = 0.008540 C = 0.007863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.833033 B = 3277.808647 C = 3560.120801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.062 4.062 3 C -0.130 4.130 4 C -0.139 4.139 5 C 0.110 3.890 6 H 0.038 0.962 7 C -0.117 4.117 8 C 0.236 3.764 9 O -0.598 6.598 10 C -0.561 4.561 11 H 0.049 0.951 12 C 0.029 3.971 13 N -0.912 5.912 14 Si 0.957 3.043 15 H -0.273 1.273 16 H -0.278 1.278 17 H -0.277 1.277 18 C -0.161 4.161 19 C 0.070 3.930 20 O -0.387 6.387 21 H 0.050 0.950 22 H 0.073 0.927 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.373 0.627 33 H 0.269 0.731 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.037 0.963 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.695 8.264 -6.327 10.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.063 4.063 3 C -0.187 4.187 4 C -0.196 4.196 5 C 0.052 3.948 6 H 0.056 0.944 7 C -0.155 4.155 8 C 0.197 3.803 9 O -0.406 6.406 10 C -0.599 4.599 11 H 0.067 0.933 12 C -0.171 4.171 13 N -0.553 5.553 14 Si 0.783 3.217 15 H -0.198 1.198 16 H -0.204 1.204 17 H -0.203 1.203 18 C -0.199 4.199 19 C -0.006 4.006 20 O -0.307 6.307 21 H 0.069 0.931 22 H 0.092 0.908 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.222 0.778 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.816 8.685 -6.752 11.150 hybrid contribution -0.002 -1.865 1.104 2.168 sum -1.818 6.819 -5.648 9.039 Atomic orbital electron populations 1.21802 0.93808 1.01471 1.01998 1.20616 0.96777 0.96261 0.92605 1.21742 1.00486 0.94292 1.02203 1.21886 1.00969 1.00212 0.96537 1.22038 0.96143 0.90841 0.85731 0.94423 1.22114 1.00073 0.95569 0.97754 1.18869 0.78278 0.92082 0.91107 1.86088 1.23317 1.82513 1.48699 1.22057 1.31668 1.00098 1.06074 0.93280 1.25675 0.94795 1.02033 0.94601 1.69680 1.37942 1.37575 1.10078 0.85526 0.78274 0.79947 0.77952 1.19800 1.20403 1.20288 1.22632 0.99249 0.95352 1.02711 1.22523 0.97800 0.93936 0.86376 1.87728 1.74589 1.54436 1.13902 0.93067 0.90850 0.93540 0.93175 0.90791 0.92926 0.93169 0.90019 0.92850 0.91521 0.92379 0.77773 0.92138 0.90480 0.94175 0.94438 0.88426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.77 7.98 71.98 0.57 -3.19 16 2 C -0.06 -1.86 0.63 -52.18 -0.03 -1.89 16 3 C -0.13 -3.33 8.33 71.98 0.60 -2.73 16 4 C -0.14 -3.69 8.12 71.98 0.58 -3.10 16 5 C 0.11 4.22 1.76 30.63 0.05 4.28 16 6 H 0.04 1.58 7.82 -2.39 -0.02 1.56 16 7 C -0.12 -5.15 3.65 30.69 0.11 -5.04 16 8 C 0.24 11.91 0.67 -11.37 -0.01 11.90 16 9 O -0.60 -31.48 11.93 -148.98 -1.78 -33.26 16 10 C -0.56 -30.83 8.26 25.60 0.21 -30.62 16 11 H 0.05 2.72 7.75 -2.91 -0.02 2.69 16 12 C 0.03 1.53 5.22 84.66 0.44 1.97 16 13 N -0.91 -48.92 9.76 21.45 0.21 -48.71 16 14 Si 0.96 42.75 29.54 68.60 2.03 44.77 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 17 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 18 C -0.16 -7.68 4.87 30.73 0.15 -7.53 16 19 C 0.07 2.86 6.70 72.02 0.48 3.34 16 20 O -0.39 -15.34 9.06 -148.98 -1.35 -16.68 16 21 H 0.05 1.54 7.68 -2.39 -0.02 1.52 16 22 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.05 1.40 6.38 -2.39 -0.02 1.39 16 24 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 25 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 27 H 0.05 1.45 6.49 -2.38 -0.02 1.43 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.07 2.90 6.32 -2.39 -0.02 2.89 16 31 H 0.06 2.55 6.57 -2.38 -0.02 2.54 16 32 H 0.37 20.21 7.14 -74.06 -0.53 19.68 16 33 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 34 H 0.08 3.98 6.22 -2.39 -0.01 3.97 16 35 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.04 1.57 7.82 -2.39 -0.02 1.55 16 37 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 Total: -1.00 -57.22 280.95 2.79 -54.43 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.51 Total: 32.06 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: 3.17 Total: -32.62 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.21 Total: -48.71 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -3.13 Total: -49.94 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -57.22 2.79 -54.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721528008.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.513 kcal (2) G-P(sol) polarization free energy of solvation -57.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds