Wall clock time and date at job start Mon Mar 30 2020 03:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46771 * 330.00099 * 4 3 2 6 6 C 1.52999 * 109.47088 * 89.99580 * 4 3 2 7 7 C 1.53002 * 109.46730 * 60.00547 * 6 4 3 8 8 C 1.52997 * 109.47120 * 59.99903 * 7 6 4 9 9 C 1.53004 * 109.47067 * 299.99707 * 8 7 6 10 10 H 1.08999 * 109.47120 * 300.00377 * 9 8 7 11 11 O 1.42900 * 109.46847 * 180.02562 * 9 8 7 12 12 C 1.42893 * 114.00269 * 90.00214 * 11 9 8 13 13 C 1.50704 * 109.47172 * 179.97438 * 12 11 9 14 14 H 1.07994 * 119.99968 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00133 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47038 * 60.00156 * 17 15 13 19 19 H 1.48499 * 109.47365 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47425 * 300.00193 * 17 15 13 21 21 C 1.52996 * 109.46808 * 60.00460 * 9 8 7 22 22 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 27 27 H 1.08999 * 109.46970 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.47466 * 300.00081 * 6 4 3 29 29 H 1.09010 * 109.46919 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47055 * 299.99533 * 7 6 4 31 31 H 1.08999 * 109.47459 * 59.99877 * 8 7 6 32 32 H 1.09007 * 109.47076 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47368 * 299.99607 * 12 11 9 34 34 H 1.09007 * 109.47399 * 59.99815 * 12 11 9 35 35 H 0.97000 * 120.00091 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47044 * 180.02562 * 21 9 8 37 37 H 1.08999 * 109.47347 * 60.00057 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6016 0.5130 6 6 3.9387 1.5006 -1.4433 7 6 3.3313 2.7058 -2.1641 8 6 3.7414 3.9913 -1.4428 9 6 3.2336 3.9508 -0.0001 10 1 2.1470 3.8647 0.0003 11 8 3.6161 5.1517 0.6734 12 6 2.6573 6.2062 0.5710 13 6 3.1608 7.4169 1.3138 14 1 4.1172 7.3841 1.8144 15 6 2.4005 8.5664 1.3543 16 7 1.2356 8.6062 0.7451 17 14 3.0243 10.0668 2.2757 18 1 4.3130 10.5097 1.6855 19 1 2.0280 11.1628 2.1692 20 1 3.2277 9.7206 3.7054 21 6 3.8410 2.7457 0.7207 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 5.0253 1.5863 -1.4437 28 1 3.6466 0.5848 -1.9571 29 1 3.6934 2.7349 -3.1919 30 1 2.2447 2.6197 -2.1636 31 1 4.8280 4.0774 -1.4432 32 1 3.3091 4.8500 -1.9566 33 1 2.5069 6.4600 -0.4784 34 1 1.7118 5.8812 1.0053 35 1 0.7009 9.4150 0.7733 36 1 3.4788 2.7165 1.7484 37 1 4.9276 2.8318 0.7203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721591961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:54 Heat of formation + Delta-G solvation = -122.301234 kcal Electronic energy + Delta-G solvation = -16434.298499 eV Core-core repulsion = 13789.707250 eV Total energy + Delta-G solvation = -2644.591248 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.32524 -37.00623 -34.92199 -32.61002 -31.36613 -29.79174 -28.94741 -26.83879 -22.95261 -22.57323 -22.14493 -21.48288 -19.46626 -16.64446 -16.05594 -15.97158 -15.65473 -14.95734 -14.27573 -14.14926 -14.08405 -13.53676 -12.91791 -12.82718 -12.36496 -12.28875 -11.95365 -11.75435 -11.61085 -11.40235 -11.10585 -10.91082 -10.83791 -10.62612 -10.36047 -10.19409 -10.14655 -9.63420 -9.36553 -9.01358 -8.70317 -8.03682 -6.04820 -4.06422 3.35724 3.38095 3.42149 3.74676 4.38491 4.75702 4.87381 4.92292 5.03772 5.19243 5.28258 5.31041 5.32336 5.45056 5.58667 5.63424 5.72251 5.75909 5.84746 5.87273 5.98270 6.07608 6.11133 6.23408 6.36815 6.44304 6.55447 6.73674 6.80072 7.24545 7.36025 7.54138 7.85822 8.23952 8.69335 9.07926 9.58153 11.06645 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.037407 B = 0.005567 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.335303 B = 5028.360951 C = 5315.772149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.374 6.374 4 C 0.094 3.906 5 H 0.059 0.941 6 C -0.140 4.140 7 C -0.110 4.110 8 C -0.139 4.139 9 C 0.095 3.905 10 H 0.059 0.941 11 O -0.393 6.393 12 C 0.197 3.803 13 C -0.515 4.515 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.907 3.093 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.111 4.111 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.044 0.956 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.004 0.996 34 H 0.004 0.996 35 H 0.264 0.736 36 H 0.071 0.929 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.039 -17.030 -3.836 17.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.294 6.294 4 C 0.037 3.963 5 H 0.077 0.923 6 C -0.177 4.177 7 C -0.148 4.148 8 C -0.177 4.177 9 C 0.036 3.964 10 H 0.077 0.923 11 O -0.313 6.313 12 C 0.123 3.877 13 C -0.553 4.553 14 H 0.083 0.917 15 C -0.145 4.145 16 N -0.538 5.538 17 Si 0.734 3.266 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.148 4.148 22 H 0.083 0.917 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.928 -16.719 -3.767 17.246 hybrid contribution 0.116 0.569 0.217 0.620 sum 2.045 -16.150 -3.550 16.661 Atomic orbital electron populations 1.21737 0.93971 1.01799 1.03394 1.22455 0.95539 0.84565 0.99471 1.88019 1.20950 1.25435 1.94951 1.22079 0.81213 0.97767 0.95278 0.92326 1.22033 1.00696 0.98768 0.96232 1.21375 1.01308 0.94042 0.98038 1.22031 1.01356 0.97275 0.97043 1.21696 0.98267 0.86017 0.90414 0.92314 1.87846 1.47558 1.21832 1.74075 1.20194 0.87341 0.84216 0.95969 1.21052 1.05317 0.96004 1.32936 0.91679 1.24945 0.94827 0.98855 0.95861 1.69961 1.11721 1.28678 1.43446 0.86412 0.78456 0.81474 0.80215 1.20049 1.21181 1.20046 1.21668 1.01088 0.92411 0.99665 0.91718 0.91517 0.91836 0.93766 0.93841 0.91123 0.92333 0.92494 0.91399 0.91910 0.91667 0.97790 0.97779 0.92661 0.90990 0.90344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.62 6.47 37.16 0.24 0.86 16 3 O -0.37 -5.44 8.64 -35.23 -0.30 -5.74 16 4 C 0.09 1.26 2.92 -26.73 -0.08 1.18 16 5 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 6 C -0.14 -1.70 5.63 -26.73 -0.15 -1.85 16 7 C -0.11 -1.55 5.78 -26.73 -0.15 -1.71 16 8 C -0.14 -2.44 5.54 -26.73 -0.15 -2.59 16 9 C 0.09 1.90 2.46 -26.73 -0.07 1.84 16 10 H 0.06 1.27 7.33 -51.93 -0.38 0.89 16 11 O -0.39 -9.93 9.97 -35.23 -0.35 -10.28 16 12 C 0.20 5.63 5.50 36.01 0.20 5.83 16 13 C -0.51 -15.60 9.43 -34.44 -0.32 -15.92 16 14 H 0.06 1.95 7.81 -52.49 -0.41 1.54 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 17 Si 0.91 22.27 29.54 -169.99 -5.02 17.25 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.11 -1.81 5.31 -26.73 -0.14 -1.95 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 26 H 0.04 0.42 7.87 -51.93 -0.41 0.01 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.62 7.87 -51.93 -0.41 0.21 16 29 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.07 1.02 7.68 -51.93 -0.40 0.62 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.25 7.87 -51.93 -0.41 0.84 16 33 H 0.00 0.13 7.87 -51.93 -0.41 -0.28 16 34 H 0.00 0.13 8.09 -51.93 -0.42 -0.29 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 299.24 15.07 4.51 4.51 Total: -1.00 -31.99 299.24 -7.36 -39.35 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -6.59 Total: -4.39 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.34 Total: -13.89 kcal Atomic # 7 Polarization: -27.54 SS G_CDS: 0.74 Total: -26.80 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.66 Total: -16.02 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -31.99 -7.36 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721591961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.953 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds