Wall clock time and date at job start Mon Mar 30 2020 03:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46771 * 330.00099 * 4 3 2 6 6 C 1.52999 * 109.47088 * 89.99580 * 4 3 2 7 7 C 1.53002 * 109.46730 * 60.00547 * 6 4 3 8 8 C 1.52997 * 109.47120 * 59.99903 * 7 6 4 9 9 C 1.53004 * 109.47067 * 299.99707 * 8 7 6 10 10 H 1.08999 * 109.47120 * 300.00377 * 9 8 7 11 11 O 1.42900 * 109.46847 * 180.02562 * 9 8 7 12 12 C 1.42893 * 114.00269 * 90.00214 * 11 9 8 13 13 C 1.50704 * 109.47172 * 179.97438 * 12 11 9 14 14 H 1.07994 * 119.99968 * 359.97438 * 13 12 11 15 15 C 1.37881 * 119.99939 * 179.97438 * 13 12 11 16 16 N 1.31515 * 120.00133 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99821 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47038 * 60.00156 * 17 15 13 19 19 H 1.48499 * 109.47365 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47425 * 300.00193 * 17 15 13 21 21 C 1.52996 * 109.46808 * 60.00460 * 9 8 7 22 22 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 25 25 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 26 26 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 27 27 H 1.08999 * 109.46970 * 180.02562 * 6 4 3 28 28 H 1.09000 * 109.47466 * 300.00081 * 6 4 3 29 29 H 1.09010 * 109.46919 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47055 * 299.99533 * 7 6 4 31 31 H 1.08999 * 109.47459 * 59.99877 * 8 7 6 32 32 H 1.09007 * 109.47076 * 179.97438 * 8 7 6 33 33 H 1.09000 * 109.47368 * 299.99607 * 12 11 9 34 34 H 1.09007 * 109.47399 * 59.99815 * 12 11 9 35 35 H 0.97000 * 120.00091 * 180.02562 * 16 15 13 36 36 H 1.09001 * 109.47044 * 180.02562 * 21 9 8 37 37 H 1.08999 * 109.47347 * 60.00057 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.8636 0.6016 0.5130 6 6 3.9387 1.5006 -1.4433 7 6 3.3313 2.7058 -2.1641 8 6 3.7414 3.9913 -1.4428 9 6 3.2336 3.9508 -0.0001 10 1 2.1470 3.8647 0.0003 11 8 3.6161 5.1517 0.6734 12 6 2.6573 6.2062 0.5710 13 6 3.1608 7.4169 1.3138 14 1 4.1172 7.3841 1.8144 15 6 2.4005 8.5664 1.3543 16 7 1.2356 8.6062 0.7451 17 14 3.0243 10.0668 2.2757 18 1 4.3130 10.5097 1.6855 19 1 2.0280 11.1628 2.1692 20 1 3.2277 9.7206 3.7054 21 6 3.8410 2.7457 0.7207 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 5.0253 1.5863 -1.4437 28 1 3.6466 0.5848 -1.9571 29 1 3.6934 2.7349 -3.1919 30 1 2.2447 2.6197 -2.1636 31 1 4.8280 4.0774 -1.4432 32 1 3.3091 4.8500 -1.9566 33 1 2.5069 6.4600 -0.4784 34 1 1.7118 5.8812 1.0053 35 1 0.7009 9.4150 0.7733 36 1 3.4788 2.7165 1.7484 37 1 4.9276 2.8318 0.7203 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721591961.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:54 Heat of formation + Delta-G solvation = -142.714857 kcal Electronic energy + Delta-G solvation = -16435.183700 eV Core-core repulsion = 13789.707250 eV Total energy + Delta-G solvation = -2645.476449 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.56246 -38.57096 -36.37861 -34.83888 -32.34095 -31.18607 -30.21487 -28.97376 -24.72826 -23.77746 -23.41288 -22.97398 -20.71428 -18.70074 -17.66075 -17.27991 -16.83427 -16.49898 -16.08871 -15.81788 -15.38179 -14.84826 -14.59625 -13.94626 -13.72077 -13.60727 -13.58621 -13.01615 -12.89474 -12.80471 -12.68422 -12.55514 -12.20683 -12.14017 -11.87133 -11.74702 -11.57387 -11.25783 -11.09558 -10.81871 -10.37372 -10.08179 -8.33133 -6.47012 1.38543 1.44352 1.52799 2.33756 2.81105 2.99921 3.11042 3.76413 3.82395 4.08468 4.18649 4.24153 4.25016 4.38935 4.40456 4.52247 4.55454 4.59879 4.67819 4.75976 4.79274 4.99909 5.00410 5.05486 5.08996 5.12578 5.19525 5.26340 5.29630 5.38586 5.44696 5.55241 5.95046 6.43012 6.53785 6.81980 7.25411 8.79337 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.037407 B = 0.005567 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.335303 B = 5028.360951 C = 5315.772149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.050 3.950 3 O -0.407 6.407 4 C 0.096 3.904 5 H 0.091 0.909 6 C -0.134 4.134 7 C -0.104 4.104 8 C -0.135 4.135 9 C 0.084 3.916 10 H 0.032 0.968 11 O -0.407 6.407 12 C 0.215 3.785 13 C -0.552 4.552 14 H 0.064 0.936 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.987 3.013 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.264 1.264 21 C -0.107 4.107 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.036 0.964 33 H -0.018 1.018 34 H -0.024 1.024 35 H 0.271 0.729 36 H 0.058 0.942 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -18.155 -3.814 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.327 6.327 4 C 0.039 3.961 5 H 0.109 0.891 6 C -0.171 4.171 7 C -0.141 4.141 8 C -0.173 4.173 9 C 0.026 3.974 10 H 0.051 0.949 11 O -0.327 6.327 12 C 0.140 3.860 13 C -0.589 4.589 14 H 0.082 0.918 15 C -0.193 4.193 16 N -0.571 5.571 17 Si 0.809 3.191 18 H -0.188 1.188 19 H -0.198 1.198 20 H -0.189 1.189 21 C -0.144 4.144 22 H 0.067 0.933 23 H 0.112 0.888 24 H 0.071 0.929 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.106 0.894 28 H 0.103 0.897 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.000 1.000 34 H -0.006 1.006 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.255 -17.878 -3.756 18.556 hybrid contribution -0.360 0.851 0.182 0.942 sum 2.895 -17.027 -3.574 17.637 Atomic orbital electron populations 1.21777 0.93853 1.03189 1.02111 1.22687 0.95754 0.83154 1.01025 1.88001 1.21648 1.27900 1.95178 1.22115 0.81152 0.96723 0.96138 0.89139 1.22035 1.01517 0.98528 0.95051 1.21335 1.00678 0.93023 0.99091 1.21975 1.01496 0.98514 0.95275 1.22054 0.97404 0.85446 0.92464 0.94934 1.87790 1.46794 1.22912 1.75250 1.19762 0.86882 0.85187 0.94152 1.21391 1.05884 0.97342 1.34311 0.91814 1.26040 0.94694 1.02300 0.96302 1.70086 1.12905 1.30047 1.44101 0.85181 0.78350 0.76683 0.78862 1.18794 1.19844 1.18895 1.21686 1.01602 0.92222 0.98927 0.93276 0.88770 0.92861 0.92405 0.91876 0.89364 0.89667 0.90255 0.92839 0.91018 0.94490 1.00006 1.00587 0.91984 0.92303 0.88941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 10.28 71.98 0.74 -2.14 16 2 C 0.05 0.98 6.47 71.98 0.47 1.45 16 3 O -0.41 -11.47 8.64 -148.98 -1.29 -12.75 16 4 C 0.10 2.36 2.92 30.59 0.09 2.45 16 5 H 0.09 1.68 7.79 -2.38 -0.02 1.67 16 6 C -0.13 -2.82 5.63 30.59 0.17 -2.65 16 7 C -0.10 -2.80 5.78 30.59 0.18 -2.62 16 8 C -0.13 -4.82 5.54 30.59 0.17 -4.65 16 9 C 0.08 3.51 2.46 30.59 0.08 3.59 16 10 H 0.03 1.51 7.33 -2.39 -0.02 1.49 16 11 O -0.41 -21.55 9.97 -148.98 -1.49 -23.04 16 12 C 0.22 13.03 5.50 71.24 0.39 13.42 16 13 C -0.55 -34.46 9.43 25.60 0.24 -34.22 16 14 H 0.06 3.90 7.81 -2.91 -0.02 3.87 16 15 C 0.01 0.30 5.46 84.66 0.46 0.76 16 16 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16 17 Si 0.99 45.61 29.54 68.60 2.03 47.63 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 21 C -0.11 -3.45 5.31 30.59 0.16 -3.28 16 22 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 25 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16 26 H 0.06 1.00 7.87 -2.39 -0.02 0.98 16 27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.08 1.41 7.87 -2.39 -0.02 1.39 16 29 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.05 1.60 7.68 -2.39 -0.02 1.58 16 31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.04 1.49 7.87 -2.38 -0.02 1.47 16 33 H -0.02 -1.13 7.87 -2.39 -0.02 -1.14 16 34 H -0.02 -1.52 8.09 -2.38 -0.02 -1.54 16 35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -71.63 299.24 3.69 -67.95 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: 1.00 Total: 6.14 kcal Atomic # 6 Polarization: -31.04 SS G_CDS: 3.15 Total: -27.90 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 0.28 Total: -58.02 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -2.77 Total: -35.79 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -71.63 3.69 -67.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721591961.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.770 kcal (2) G-P(sol) polarization free energy of solvation -71.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds