Wall clock time and date at job start Mon Mar 30 2020 03:36:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 O 1.42906 * 109.47321 * 2 1
4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1
5 5 H 1.09007 * 109.46771 * 330.00099 * 4 3 2
6 6 C 1.52999 * 109.47088 * 89.99580 * 4 3 2
7 7 C 1.53002 * 109.46730 * 60.00547 * 6 4 3
8 8 C 1.52997 * 109.47120 * 59.99903 * 7 6 4
9 9 C 1.53004 * 109.47067 * 299.99707 * 8 7 6
10 10 H 1.08999 * 109.47120 * 300.00377 * 9 8 7
11 11 O 1.42900 * 109.46847 * 180.02562 * 9 8 7
12 12 C 1.42893 * 114.00269 * 90.00214 * 11 9 8
13 13 C 1.50704 * 109.47172 * 179.97438 * 12 11 9
14 14 H 1.07994 * 119.99968 * 359.97438 * 13 12 11
15 15 C 1.37881 * 119.99939 * 179.97438 * 13 12 11
16 16 N 1.31515 * 120.00133 * 0.02562 * 15 13 12
17 17 Si 1.86794 * 119.99821 * 179.97438 * 15 13 12
18 18 H 1.48500 * 109.47038 * 60.00156 * 17 15 13
19 19 H 1.48499 * 109.47365 * 180.02562 * 17 15 13
20 20 H 1.48500 * 109.47425 * 300.00193 * 17 15 13
21 21 C 1.52996 * 109.46808 * 60.00460 * 9 8 7
22 22 H 1.09002 * 109.47153 * 299.99798 * 1 2 3
23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
24 24 H 1.09004 * 109.47261 * 59.99970 * 1 2 3
25 25 H 1.08996 * 109.47853 * 120.00174 * 2 1 3
26 26 H 1.09002 * 109.47153 * 240.00202 * 2 1 3
27 27 H 1.08999 * 109.46970 * 180.02562 * 6 4 3
28 28 H 1.09000 * 109.47466 * 300.00081 * 6 4 3
29 29 H 1.09010 * 109.46919 * 179.97438 * 7 6 4
30 30 H 1.08999 * 109.47055 * 299.99533 * 7 6 4
31 31 H 1.08999 * 109.47459 * 59.99877 * 8 7 6
32 32 H 1.09007 * 109.47076 * 179.97438 * 8 7 6
33 33 H 1.09000 * 109.47368 * 299.99607 * 12 11 9
34 34 H 1.09007 * 109.47399 * 59.99815 * 12 11 9
35 35 H 0.97000 * 120.00091 * 180.02562 * 16 15 13
36 36 H 1.09001 * 109.47044 * 180.02562 * 21 9 8
37 37 H 1.08999 * 109.47347 * 60.00057 * 21 9 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0064 1.3473 0.0000
4 6 3.4309 1.4602 -0.0006
5 1 3.8636 0.6016 0.5130
6 6 3.9387 1.5006 -1.4433
7 6 3.3313 2.7058 -2.1641
8 6 3.7414 3.9913 -1.4428
9 6 3.2336 3.9508 -0.0001
10 1 2.1470 3.8647 0.0003
11 8 3.6161 5.1517 0.6734
12 6 2.6573 6.2062 0.5710
13 6 3.1608 7.4169 1.3138
14 1 4.1172 7.3841 1.8144
15 6 2.4005 8.5664 1.3543
16 7 1.2356 8.6062 0.7451
17 14 3.0243 10.0668 2.2757
18 1 4.3130 10.5097 1.6855
19 1 2.0280 11.1628 2.1692
20 1 3.2277 9.7206 3.7054
21 6 3.8410 2.7457 0.7207
22 1 -0.3633 0.5138 0.8900
23 1 -0.3633 -1.0277 -0.0005
24 1 -0.3634 0.5139 -0.8900
25 1 1.8934 -0.5138 0.8899
26 1 1.8933 -0.5138 -0.8900
27 1 5.0253 1.5863 -1.4437
28 1 3.6466 0.5848 -1.9571
29 1 3.6934 2.7349 -3.1919
30 1 2.2447 2.6197 -2.1636
31 1 4.8280 4.0774 -1.4432
32 1 3.3091 4.8500 -1.9566
33 1 2.5069 6.4600 -0.4784
34 1 1.7118 5.8812 1.0053
35 1 0.7009 9.4150 0.7733
36 1 3.4788 2.7165 1.7484
37 1 4.9276 2.8318 0.7203
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000721591961.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:36:54
Heat of formation + Delta-G solvation = -142.714857 kcal
Electronic energy + Delta-G solvation = -16435.183700 eV
Core-core repulsion = 13789.707250 eV
Total energy + Delta-G solvation = -2645.476449 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 228.151 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-40.56246 -38.57096 -36.37861 -34.83888 -32.34095 -31.18607 -30.21487 -28.97376
-24.72826 -23.77746 -23.41288 -22.97398 -20.71428 -18.70074 -17.66075 -17.27991
-16.83427 -16.49898 -16.08871 -15.81788 -15.38179 -14.84826 -14.59625 -13.94626
-13.72077 -13.60727 -13.58621 -13.01615 -12.89474 -12.80471 -12.68422 -12.55514
-12.20683 -12.14017 -11.87133 -11.74702 -11.57387 -11.25783 -11.09558 -10.81871
-10.37372 -10.08179 -8.33133 -6.47012 1.38543 1.44352 1.52799 2.33756
2.81105 2.99921 3.11042 3.76413 3.82395 4.08468 4.18649 4.24153
4.25016 4.38935 4.40456 4.52247 4.55454 4.59879 4.67819 4.75976
4.79274 4.99909 5.00410 5.05486 5.08996 5.12578 5.19525 5.26340
5.29630 5.38586 5.44696 5.55241 5.95046 6.43012 6.53785 6.81980
7.25411 8.79337
Molecular weight = 228.15amu
Principal moments of inertia in cm(-1)
A = 0.037407 B = 0.005567 C = 0.005266
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 748.335303 B = 5028.360951 C = 5315.772149
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C 0.050 3.950
3 O -0.407 6.407
4 C 0.096 3.904
5 H 0.091 0.909
6 C -0.134 4.134
7 C -0.104 4.104
8 C -0.135 4.135
9 C 0.084 3.916
10 H 0.032 0.968
11 O -0.407 6.407
12 C 0.215 3.785
13 C -0.552 4.552
14 H 0.064 0.936
15 C 0.005 3.995
16 N -0.932 5.932
17 Si 0.987 3.013
18 H -0.263 1.263
19 H -0.274 1.274
20 H -0.264 1.264
21 C -0.107 4.107
22 H 0.048 0.952
23 H 0.094 0.906
24 H 0.052 0.948
25 H 0.058 0.942
26 H 0.063 0.937
27 H 0.088 0.912
28 H 0.085 0.915
29 H 0.079 0.921
30 H 0.053 0.947
31 H 0.071 0.929
32 H 0.036 0.964
33 H -0.018 1.018
34 H -0.024 1.024
35 H 0.271 0.729
36 H 0.058 0.942
37 H 0.092 0.908
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.366 -18.155 -3.814 18.854
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.026 4.026
3 O -0.327 6.327
4 C 0.039 3.961
5 H 0.109 0.891
6 C -0.171 4.171
7 C -0.141 4.141
8 C -0.173 4.173
9 C 0.026 3.974
10 H 0.051 0.949
11 O -0.327 6.327
12 C 0.140 3.860
13 C -0.589 4.589
14 H 0.082 0.918
15 C -0.193 4.193
16 N -0.571 5.571
17 Si 0.809 3.191
18 H -0.188 1.188
19 H -0.198 1.198
20 H -0.189 1.189
21 C -0.144 4.144
22 H 0.067 0.933
23 H 0.112 0.888
24 H 0.071 0.929
25 H 0.076 0.924
26 H 0.081 0.919
27 H 0.106 0.894
28 H 0.103 0.897
29 H 0.097 0.903
30 H 0.072 0.928
31 H 0.090 0.910
32 H 0.055 0.945
33 H 0.000 1.000
34 H -0.006 1.006
35 H 0.080 0.920
36 H 0.077 0.923
37 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 3.255 -17.878 -3.756 18.556
hybrid contribution -0.360 0.851 0.182 0.942
sum 2.895 -17.027 -3.574 17.637
Atomic orbital electron populations
1.21777 0.93853 1.03189 1.02111 1.22687 0.95754 0.83154 1.01025
1.88001 1.21648 1.27900 1.95178 1.22115 0.81152 0.96723 0.96138
0.89139 1.22035 1.01517 0.98528 0.95051 1.21335 1.00678 0.93023
0.99091 1.21975 1.01496 0.98514 0.95275 1.22054 0.97404 0.85446
0.92464 0.94934 1.87790 1.46794 1.22912 1.75250 1.19762 0.86882
0.85187 0.94152 1.21391 1.05884 0.97342 1.34311 0.91814 1.26040
0.94694 1.02300 0.96302 1.70086 1.12905 1.30047 1.44101 0.85181
0.78350 0.76683 0.78862 1.18794 1.19844 1.18895 1.21686 1.01602
0.92222 0.98927 0.93276 0.88770 0.92861 0.92405 0.91876 0.89364
0.89667 0.90255 0.92839 0.91018 0.94490 1.00006 1.00587 0.91984
0.92303 0.88941
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.88 10.28 71.98 0.74 -2.14 16
2 C 0.05 0.98 6.47 71.98 0.47 1.45 16
3 O -0.41 -11.47 8.64 -148.98 -1.29 -12.75 16
4 C 0.10 2.36 2.92 30.59 0.09 2.45 16
5 H 0.09 1.68 7.79 -2.38 -0.02 1.67 16
6 C -0.13 -2.82 5.63 30.59 0.17 -2.65 16
7 C -0.10 -2.80 5.78 30.59 0.18 -2.62 16
8 C -0.13 -4.82 5.54 30.59 0.17 -4.65 16
9 C 0.08 3.51 2.46 30.59 0.08 3.59 16
10 H 0.03 1.51 7.33 -2.39 -0.02 1.49 16
11 O -0.41 -21.55 9.97 -148.98 -1.49 -23.04 16
12 C 0.22 13.03 5.50 71.24 0.39 13.42 16
13 C -0.55 -34.46 9.43 25.60 0.24 -34.22 16
14 H 0.06 3.90 7.81 -2.91 -0.02 3.87 16
15 C 0.01 0.30 5.46 84.66 0.46 0.76 16
16 N -0.93 -58.31 13.29 21.45 0.28 -58.02 16
17 Si 0.99 45.61 29.54 68.60 2.03 47.63 16
18 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16
19 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16
20 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16
21 C -0.11 -3.45 5.31 30.59 0.16 -3.28 16
22 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
23 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
24 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16
25 H 0.06 0.98 8.08 -2.39 -0.02 0.96 16
26 H 0.06 1.00 7.87 -2.39 -0.02 0.98 16
27 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16
28 H 0.08 1.41 7.87 -2.39 -0.02 1.39 16
29 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16
30 H 0.05 1.60 7.68 -2.39 -0.02 1.58 16
31 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
32 H 0.04 1.49 7.87 -2.38 -0.02 1.47 16
33 H -0.02 -1.13 7.87 -2.39 -0.02 -1.14 16
34 H -0.02 -1.52 8.09 -2.38 -0.02 -1.54 16
35 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16
36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16
37 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16
Total: -1.00 -71.63 299.24 3.69 -67.95
By element:
Atomic # 1 Polarization: 5.13 SS G_CDS: 1.00 Total: 6.14 kcal
Atomic # 6 Polarization: -31.04 SS G_CDS: 3.15 Total: -27.90 kcal
Atomic # 7 Polarization: -58.31 SS G_CDS: 0.28 Total: -58.02 kcal
Atomic # 8 Polarization: -33.02 SS G_CDS: -2.77 Total: -35.79 kcal
Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal
Total: -71.63 3.69 -67.95 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000721591961.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -74.770 kcal
(2) G-P(sol) polarization free energy of solvation -71.634 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.404 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.945 kcal
(6) G-S(sol) free energy of system = (1) + (5) -142.715 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds