Wall clock time and date at job start Mon Mar 30 2020 03:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34769 * 120.00245 * 2 1 4 4 O 1.21593 * 119.99726 * 180.02562 * 3 2 1 5 5 N 1.34780 * 120.00440 * 359.97438 * 3 2 1 6 6 C 1.46495 * 120.00364 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.47131 * 180.02562 * 6 5 3 8 8 H 1.08000 * 119.99758 * 0.02562 * 7 6 5 9 9 C 1.37879 * 119.99974 * 180.02562 * 7 6 5 10 10 N 1.31515 * 119.99887 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00015 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47105 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46931 * 120.00175 * 11 9 7 14 14 H 1.48504 * 109.46973 * 240.00061 * 11 9 7 15 15 C 1.46500 * 119.99610 * 179.97438 * 2 1 3 16 16 H 1.08999 * 110.83088 * 183.64923 * 15 2 1 17 17 C 1.54813 * 110.90801 * 60.00008 * 15 2 1 18 18 C 1.54098 * 104.30472 * 220.98806 * 17 15 2 19 19 O 1.43744 * 107.29564 * 357.90152 * 18 17 15 20 20 C 1.44373 * 106.97248 * 26.51652 * 19 18 17 21 21 H 1.09007 * 109.47275 * 270.00453 * 1 2 3 22 22 H 1.09009 * 109.46675 * 29.99951 * 1 2 3 23 23 H 1.08998 * 109.47632 * 150.00333 * 1 2 3 24 24 H 0.97000 * 119.99548 * 0.02562 * 5 3 2 25 25 H 1.08994 * 109.47399 * 300.00928 * 6 5 3 26 26 H 1.09006 * 109.46697 * 59.99994 * 6 5 3 27 27 H 0.96999 * 119.99977 * 179.97438 * 10 9 7 28 28 H 1.09002 * 110.48794 * 102.24351 * 17 15 2 29 29 H 1.09002 * 110.48657 * 339.72773 * 17 15 2 30 30 H 1.08999 * 109.88182 * 117.33024 * 18 17 15 31 31 H 1.08997 * 109.87763 * 238.47782 * 18 17 15 32 32 H 1.09002 * 110.62093 * 78.43762 * 20 19 18 33 33 H 1.09000 * 110.61898 * 201.27906 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3548 1.1670 -0.0005 5 7 1.4651 2.3344 -0.0005 6 6 2.1977 3.6031 0.0000 7 6 1.2185 4.7486 -0.0001 8 1 0.1566 4.5512 -0.0001 9 6 1.6781 6.0485 -0.0001 10 7 2.9712 6.2887 0.0004 11 14 0.4643 7.4684 0.0004 12 1 -0.9215 6.9349 0.0015 13 1 0.6753 8.2994 1.2129 14 1 0.6744 8.2996 -1.2121 15 6 2.1974 -1.2688 0.0006 16 1 3.2717 -1.0962 0.0653 17 6 1.8474 -2.1093 -1.2515 18 6 1.7273 -3.5511 -0.7208 19 8 2.0357 -3.5169 0.6827 20 6 1.7144 -2.1902 1.1527 21 1 -0.3634 0.0001 1.0277 22 1 -0.3633 0.8901 -0.5139 23 1 -0.3634 -0.8900 -0.5138 24 1 0.4951 2.3345 -0.0005 25 1 2.8238 3.6607 0.8904 26 1 2.8250 3.6607 -0.8895 27 1 3.2946 7.2032 0.0000 28 1 2.6441 -2.0405 -1.9922 29 1 0.9004 -1.7802 -1.6794 30 1 0.7112 -3.9169 -0.8683 31 1 2.4349 -4.1973 -1.2402 32 1 0.6396 -2.0852 1.3007 33 1 2.2511 -1.9693 2.0753 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787356353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:07 Heat of formation + Delta-G solvation = -95.027699 kcal Electronic energy + Delta-G solvation = -16032.292549 eV Core-core repulsion = 13285.343626 eV Total energy + Delta-G solvation = -2746.948922 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.47153 -39.95326 -36.49846 -36.19269 -34.37459 -32.10789 -30.04683 -28.96232 -27.70864 -24.89299 -23.59240 -22.42522 -20.76008 -19.72782 -18.14939 -17.84406 -17.24680 -16.77262 -16.63864 -16.07323 -15.92196 -15.00101 -14.65056 -14.55622 -14.35192 -14.07038 -13.70711 -13.31230 -13.20265 -12.84621 -12.75599 -12.61004 -12.35432 -12.19165 -11.72024 -11.44364 -11.20684 -10.81800 -10.74206 -10.05495 -9.44138 -8.28374 -6.45116 1.44056 1.45948 1.58311 1.66098 2.14158 2.38683 2.97077 3.06923 3.24378 3.61576 3.75354 3.97232 4.10486 4.20231 4.27394 4.58646 4.65889 4.76674 4.82968 4.85363 4.94746 5.06085 5.09501 5.25715 5.44267 5.50303 5.65903 5.83383 5.87518 6.06539 6.66443 7.14509 7.25232 7.65194 8.84350 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.065719 B = 0.005101 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 425.951466 B = 5487.433693 C = 5681.679875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.619 5.619 3 C 0.690 3.310 4 O -0.649 6.649 5 N -0.719 5.719 6 C 0.284 3.716 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.004 3.996 10 N -0.932 5.932 11 Si 0.987 3.013 12 H -0.252 1.252 13 H -0.279 1.279 14 H -0.279 1.279 15 C 0.119 3.881 16 H 0.080 0.920 17 C -0.164 4.164 18 C 0.050 3.950 19 O -0.393 6.393 20 C 0.046 3.954 21 H 0.072 0.928 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.405 0.595 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.269 0.731 28 H 0.077 0.923 29 H 0.098 0.902 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 -16.442 -1.306 19.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.356 5.356 3 C 0.392 3.608 4 O -0.531 6.531 5 N -0.374 5.374 6 C 0.160 3.840 7 C -0.591 4.591 8 H 0.102 0.898 9 C -0.196 4.196 10 N -0.570 5.570 11 Si 0.810 3.190 12 H -0.175 1.175 13 H -0.205 1.205 14 H -0.205 1.205 15 C 0.013 3.987 16 H 0.099 0.901 17 C -0.202 4.202 18 C -0.026 4.026 19 O -0.312 6.312 20 C -0.031 4.031 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.121 0.879 24 H 0.242 0.758 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.078 0.922 28 H 0.096 0.904 29 H 0.116 0.884 30 H 0.102 0.898 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.191 -16.470 -1.184 18.898 hybrid contribution -0.219 1.180 -0.134 1.208 sum -9.410 -15.289 -1.317 18.001 Atomic orbital electron populations 1.22028 0.77259 1.04655 1.03407 1.46842 1.07643 1.02994 1.78170 1.16285 0.84983 0.81629 0.77944 1.90829 1.14325 1.87107 1.60889 1.45431 1.10292 1.04393 1.77319 1.18439 0.91917 0.79681 0.93935 1.21608 0.93822 0.90811 1.52875 0.89760 1.26075 0.97382 1.02286 0.93814 1.70154 1.15204 1.21673 1.49986 0.85077 0.78807 0.77450 0.77645 1.17497 1.20506 1.20472 1.22499 0.97362 0.82478 0.96340 0.90136 1.23281 1.04173 0.95164 0.97601 1.23282 1.02570 0.95841 0.80954 1.88881 1.87297 1.30637 1.24356 1.23863 1.01566 0.80924 0.96774 0.90966 0.90807 0.87860 0.75782 0.99717 0.99716 0.92234 0.90412 0.88364 0.89787 0.88548 0.89409 0.89118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.31 8.74 127.77 1.12 2.42 16 2 N -0.62 -18.47 2.90 -832.84 -2.42 -20.88 16 3 C 0.69 29.65 8.28 179.06 1.48 31.14 16 4 O -0.65 -34.55 15.72 -4.01 -0.06 -34.61 16 5 N -0.72 -31.54 5.41 -482.30 -2.61 -34.15 16 6 C 0.28 15.91 5.43 85.63 0.46 16.38 16 7 C -0.55 -30.15 9.28 25.60 0.24 -29.91 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.00 0.22 5.46 84.65 0.46 0.68 16 10 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 11 Si 0.99 42.05 29.54 68.60 2.03 44.08 16 12 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 13 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.12 3.19 3.54 46.37 0.16 3.36 16 16 H 0.08 2.78 7.01 -2.39 -0.02 2.76 16 17 C -0.16 -3.21 6.52 31.58 0.21 -3.00 16 18 C 0.05 0.82 7.70 72.35 0.56 1.38 16 19 O -0.39 -8.95 11.52 -148.98 -1.72 -10.66 16 20 C 0.05 1.02 7.27 72.75 0.53 1.55 16 21 H 0.07 1.19 8.10 -2.38 -0.02 1.17 16 22 H 0.07 1.43 6.36 -2.38 -0.02 1.42 16 23 H 0.10 1.31 6.58 -2.39 -0.02 1.30 16 24 H 0.40 14.55 6.05 -92.71 -0.56 13.99 16 25 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H -0.02 -0.96 8.14 -2.38 -0.02 -0.97 16 27 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.59 6.50 -2.39 -0.02 1.58 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.52 7.04 -2.39 -0.02 1.51 16 33 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -74.53 274.33 1.28 -73.25 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 0.55 Total: 15.15 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 5.22 Total: 23.99 kcal Atomic # 7 Polarization: -106.45 SS G_CDS: -4.74 Total: -111.20 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.78 Total: -45.28 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -74.53 1.28 -73.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787356353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.774 kcal (2) G-P(sol) polarization free energy of solvation -74.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds