Wall clock time and date at job start Mon Mar 30 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46508 * 109.47045 * 2 1 4 4 C 1.47088 * 125.55935 * 90.00342 * 3 2 1 5 5 C 1.54093 * 103.77696 * 179.97438 * 4 3 2 6 6 H 1.09001 * 110.52200 * 118.62839 * 5 4 3 7 7 C 1.53000 * 110.52393 * 241.37064 * 5 4 3 8 8 N 1.46496 * 109.47058 * 185.00024 * 7 5 4 9 9 C 1.46497 * 119.99816 * 269.99275 * 8 7 5 10 10 C 1.36941 * 119.99981 * 90.00156 * 8 7 5 11 11 H 1.07992 * 120.00080 * 20.35792 * 10 8 7 12 12 C 1.38816 * 119.99736 * 200.36123 * 10 8 7 13 13 N 1.31617 * 120.00108 * 14.98489 * 12 10 8 14 14 Si 1.86794 * 119.99761 * 194.98850 * 12 10 8 15 15 H 1.48506 * 109.47109 * 85.00611 * 14 12 10 16 16 H 1.48503 * 109.47011 * 205.00018 * 14 12 10 17 17 H 1.48491 * 109.47388 * 325.00037 * 14 12 10 18 18 O 1.45703 * 104.00760 * 359.97438 * 5 4 3 19 19 C 1.33775 * 109.47689 * 0.02562 * 18 5 4 20 20 O 1.21506 * 123.07243 * 180.02562 * 19 18 5 21 21 H 1.08994 * 109.47372 * 60.00021 * 1 2 3 22 22 H 1.08997 * 109.47139 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46687 * 300.00108 * 1 2 3 24 24 H 1.09000 * 109.47161 * 240.00497 * 2 1 3 25 25 H 1.08994 * 109.47372 * 119.99979 * 2 1 3 26 26 H 1.08996 * 110.56663 * 61.38009 * 4 3 2 27 27 H 1.08997 * 110.56449 * 298.52406 * 4 3 2 28 28 H 1.09008 * 109.46656 * 304.99849 * 7 5 4 29 29 H 1.09000 * 109.47302 * 64.99445 * 7 5 4 30 30 H 1.09003 * 109.47064 * 95.10336 * 9 8 7 31 31 H 1.08996 * 109.47256 * 215.10334 * 9 8 7 32 32 H 1.08996 * 109.47586 * 335.10730 * 9 8 7 33 33 H 0.96992 * 120.00403 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3035 2.1877 1.1966 5 6 2.7811 3.5366 0.6248 6 1 2.1153 4.3412 0.9370 7 6 4.2178 3.8267 1.0635 8 7 4.6067 5.1639 0.6087 9 6 5.2327 5.3378 -0.7043 10 6 4.3852 6.2513 1.4111 11 1 4.2407 6.1184 2.4730 12 6 4.3462 7.5245 0.8593 13 7 4.2253 7.6741 -0.4427 14 14 4.4656 9.0255 1.9648 15 1 5.8942 9.3365 2.2247 16 1 3.8202 10.1845 1.2973 17 1 3.7772 8.7489 3.2511 18 8 2.7162 3.3505 -0.8189 19 6 2.2789 2.1157 -1.0902 20 8 2.1322 1.6979 -2.2217 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.0898 1.7242 1.7923 27 1 1.4003 2.3227 1.7915 28 1 4.2822 3.7796 2.1507 29 1 4.8876 3.0855 0.6274 30 1 4.4700 5.5954 -1.4392 31 1 5.9713 6.1376 -0.6516 32 1 5.7224 4.4097 -0.9991 33 1 4.1985 8.5637 -0.8283 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846796849.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:07 Heat of formation + Delta-G solvation = -44.490516 kcal Electronic energy + Delta-G solvation = -16463.747754 eV Core-core repulsion = 13718.990288 eV Total energy + Delta-G solvation = -2744.757466 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.10037 -37.01909 -35.65757 -35.31973 -31.91721 -31.10915 -29.22370 -25.95236 -25.50145 -23.80406 -22.49652 -21.03277 -20.07195 -17.21234 -16.72401 -16.53268 -15.97776 -15.02345 -14.67566 -14.25827 -13.76115 -13.71059 -13.37074 -13.25434 -12.91505 -12.37936 -12.08222 -11.85006 -11.51956 -11.22943 -11.19362 -10.84177 -10.70291 -10.33850 -10.19184 -10.08150 -9.95496 -9.85347 -8.76906 -8.56821 -6.84966 -5.74793 -3.21822 2.79888 3.15013 3.36509 3.42334 3.44426 4.00125 4.42972 4.61079 4.71940 4.97805 5.19850 5.25686 5.34490 5.41247 5.46327 5.62305 5.63826 5.82006 5.92709 6.06653 6.17087 6.31732 6.51839 6.66170 6.84344 7.41660 7.73964 7.83426 7.88624 8.33742 8.42124 9.18322 9.81466 10.30227 11.29190 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.048041 B = 0.006566 C = 0.006257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.696868 B = 4263.281895 C = 4474.122641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.144 3.856 3 N -0.637 5.637 4 C 0.070 3.930 5 C 0.047 3.953 6 H 0.114 0.886 7 C 0.147 3.853 8 N -0.593 5.593 9 C 0.165 3.835 10 C -0.269 4.269 11 H 0.071 0.929 12 C 0.006 3.994 13 N -0.898 5.898 14 Si 0.906 3.094 15 H -0.287 1.287 16 H -0.291 1.291 17 H -0.280 1.280 18 O -0.304 6.304 19 C 0.638 3.362 20 O -0.540 6.540 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.042 0.958 32 H -0.002 1.002 33 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.399 -13.086 5.607 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.023 3.977 3 N -0.386 5.386 4 C -0.054 4.054 5 C -0.012 4.012 6 H 0.131 0.869 7 C 0.018 3.982 8 N -0.314 5.314 9 C 0.021 3.979 10 C -0.398 4.398 11 H 0.089 0.911 12 C -0.194 4.194 13 N -0.542 5.542 14 Si 0.735 3.265 15 H -0.214 1.214 16 H -0.217 1.217 17 H -0.205 1.205 18 O -0.213 6.213 19 C 0.393 3.607 20 O -0.427 6.427 21 H 0.079 0.921 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.102 0.898 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.016 0.984 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.369 -12.908 4.742 14.429 hybrid contribution -0.197 0.882 0.687 1.135 sum -4.566 -12.026 5.429 13.962 Atomic orbital electron populations 1.22198 0.95934 1.02184 1.02704 1.21164 0.94083 0.79324 1.03146 1.48163 1.69326 1.14732 1.06427 1.22939 1.01707 0.91833 0.88933 1.25319 1.04559 0.95579 0.75757 0.86868 1.21235 0.89574 0.89147 0.98263 1.43977 1.68059 1.01210 1.18188 1.20812 0.96033 0.94984 0.86079 1.19206 1.45629 0.85033 0.89917 0.91082 1.25028 1.00502 0.98079 0.95776 1.70117 1.52717 1.21679 1.09678 0.86272 0.77794 0.82682 0.79706 1.21380 1.21737 1.20533 1.87467 1.78510 1.28385 1.26898 1.18799 0.76280 0.80355 0.85229 1.90958 1.58520 1.72332 1.20928 0.92051 0.91389 0.92416 0.89825 0.90181 0.89479 0.89995 0.91190 0.93333 0.94610 0.93953 0.98374 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 10.24 37.16 0.38 -1.29 16 2 C 0.14 1.56 6.73 -4.04 -0.03 1.53 16 3 N -0.64 -9.28 2.96 -178.85 -0.53 -9.81 16 4 C 0.07 0.89 7.34 -3.15 -0.02 0.87 16 5 C 0.05 0.83 4.11 -26.16 -0.11 0.73 16 6 H 0.11 2.14 8.14 -51.93 -0.42 1.72 16 7 C 0.15 2.80 5.25 -4.04 -0.02 2.77 16 8 N -0.59 -14.65 2.93 -181.12 -0.53 -15.18 16 9 C 0.17 4.24 8.96 59.85 0.54 4.77 16 10 C -0.27 -7.11 9.68 -15.06 -0.15 -7.25 16 11 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 12 C 0.01 0.15 5.06 -17.43 -0.09 0.07 16 13 N -0.90 -26.33 10.67 55.49 0.59 -25.73 16 14 Si 0.91 21.39 29.58 -169.99 -5.03 16.36 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 16 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 O -0.30 -6.55 10.74 -37.84 -0.41 -6.96 16 19 C 0.64 12.55 8.85 53.71 0.48 13.03 16 20 O -0.54 -12.21 17.54 -19.11 -0.34 -12.54 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.97 7.93 -51.93 -0.41 0.55 16 25 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.09 0.90 7.73 -51.93 -0.40 0.50 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.17 8.03 -51.92 -0.42 0.75 16 29 H 0.05 0.88 7.86 -51.93 -0.41 0.48 16 30 H 0.04 1.02 7.40 -51.93 -0.38 0.63 16 31 H 0.04 1.14 7.21 -51.93 -0.37 0.77 16 32 H 0.00 -0.05 7.83 -51.93 -0.41 -0.46 16 33 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 280.97 15.07 4.23 4.23 Total: -1.00 -33.10 280.97 -5.91 -39.01 By element: Atomic # 1 Polarization: 0.29 SS G_CDS: -4.89 Total: -4.60 kcal Atomic # 6 Polarization: 14.24 SS G_CDS: 0.98 Total: 15.22 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.47 Total: -50.72 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: -0.74 Total: -19.50 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -33.10 -5.91 -39.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846796849.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.479 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds