Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.41599 * 113.99750 * 2 1 4 4 C 1.46763 * 124.34836 * 90.00890 * 3 2 1 5 5 C 1.54479 * 105.47582 * 197.01297 * 4 3 2 6 6 C 1.54631 * 101.76151 * 334.58322 * 5 4 3 7 7 H 1.08998 * 110.48862 * 143.61533 * 6 5 4 8 8 N 1.46904 * 110.48076 * 266.11690 * 6 5 4 9 9 C 1.46903 * 110.99943 * 207.82124 * 8 6 5 10 10 H 1.09000 * 109.47179 * 325.54090 * 9 8 6 11 11 C 1.53001 * 109.47428 * 205.53581 * 9 8 6 12 12 C 1.50706 * 109.46810 * 85.53215 * 9 8 6 13 13 H 1.08000 * 120.00057 * 0.02562 * 12 9 8 14 14 C 1.37878 * 119.99935 * 179.97438 * 12 9 8 15 15 N 1.31515 * 119.99937 * 0.02562 * 14 12 9 16 16 Si 1.86794 * 120.00015 * 180.02562 * 14 12 9 17 17 H 1.48509 * 109.47033 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.47341 * 120.00448 * 16 14 12 19 19 H 1.48499 * 109.47329 * 240.00746 * 16 14 12 20 20 C 1.34420 * 124.35237 * 269.70274 * 3 2 1 21 21 O 1.21275 * 124.93904 * 359.57345 * 20 3 2 22 22 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47286 * 59.99105 * 1 2 3 24 24 H 1.09000 * 109.46669 * 299.99561 * 1 2 3 25 25 H 1.09008 * 110.24281 * 316.00829 * 4 3 2 26 26 H 1.08997 * 110.25327 * 77.92172 * 4 3 2 27 27 H 1.08997 * 110.97170 * 92.69549 * 5 4 3 28 28 H 1.08993 * 110.97236 * 216.43001 * 5 4 3 29 29 H 1.00890 * 111.00773 * 331.78177 * 8 6 5 30 30 H 1.09004 * 109.47073 * 179.35776 * 11 9 8 31 31 H 1.09000 * 109.46701 * 299.35923 * 11 9 8 32 32 H 1.08994 * 109.47346 * 59.35428 * 11 9 8 33 33 H 0.96997 * 119.99798 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0049 1.2936 0.0000 4 6 2.3419 2.0500 1.2117 5 6 2.5164 3.5135 0.7489 6 6 2.9006 3.3302 -0.7377 7 1 2.4623 4.1218 -1.3454 8 7 4.3613 3.3137 -0.8929 9 6 4.7547 3.7947 -2.2241 10 1 4.0088 3.4867 -2.9568 11 6 6.1140 3.2012 -2.5997 12 6 4.8506 5.2986 -2.2067 13 1 4.6407 5.8426 -1.2976 14 6 5.2073 5.9799 -3.3511 15 7 5.4633 5.3174 -4.4579 16 14 5.3268 7.8439 -3.3294 17 1 4.9926 8.3455 -1.9721 18 1 6.7093 8.2554 -3.6822 19 1 4.3740 8.4126 -4.3162 20 6 2.3187 1.9842 -1.1097 21 8 2.1564 1.5870 -2.2441 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8900 25 1 1.5325 1.9783 1.9384 26 1 3.2702 1.6764 1.6438 27 1 1.5825 4.0671 0.8449 28 1 3.3173 4.0045 1.3015 29 1 4.8082 3.8532 -0.1669 30 1 6.4006 3.5490 -3.5922 31 1 6.8621 3.5186 -1.8733 32 1 6.0476 2.1133 -2.6011 33 1 5.7139 5.7967 -5.2631 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930866551.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = -44.616200 kcal Electronic energy + Delta-G solvation = -16433.280832 eV Core-core repulsion = 13688.517916 eV Total energy + Delta-G solvation = -2744.762916 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.38257 -38.23058 -37.86079 -36.43466 -34.06503 -31.44119 -29.56825 -27.64867 -27.18957 -26.86523 -22.87549 -22.16716 -21.15475 -18.90587 -18.50481 -17.69379 -16.81117 -16.74490 -16.10760 -15.76651 -15.53096 -15.06004 -14.84016 -14.64033 -14.16188 -13.83008 -13.44624 -13.11466 -13.00760 -12.84516 -12.67545 -12.39173 -12.17232 -12.01777 -11.73849 -11.57879 -11.18196 -10.81752 -10.50978 -10.01641 -9.22953 -8.06173 -6.28810 0.76110 1.40868 1.43058 1.44357 1.55379 2.42652 3.17254 3.40507 3.47981 3.54009 3.76789 4.00976 4.32215 4.34369 4.41927 4.62527 4.64875 4.69790 4.84485 5.00458 5.06042 5.12425 5.24098 5.47278 5.65105 5.75460 5.90861 6.02057 6.07980 6.24416 6.75549 6.98580 7.14480 7.43892 8.94660 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.042700 B = 0.006852 C = 0.006556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.581149 B = 4085.335651 C = 4270.046080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 O -0.160 6.160 3 N -0.485 5.485 4 C 0.111 3.889 5 C -0.117 4.117 6 C 0.066 3.934 7 H 0.070 0.930 8 N -0.666 5.666 9 C 0.212 3.788 10 H -0.010 1.010 11 C -0.114 4.114 12 C -0.553 4.553 13 H 0.070 0.930 14 C 0.011 3.989 15 N -0.920 5.920 16 Si 0.963 3.037 17 H -0.257 1.257 18 H -0.282 1.282 19 H -0.287 1.287 20 C 0.522 3.478 21 O -0.576 6.576 22 H 0.131 0.869 23 H 0.032 0.968 24 H 0.078 0.922 25 H 0.116 0.884 26 H 0.092 0.908 27 H 0.113 0.887 28 H 0.126 0.874 29 H 0.354 0.646 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.013 0.987 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.371 -3.115 15.577 17.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 O -0.161 6.161 3 N -0.267 5.267 4 C -0.008 4.008 5 C -0.155 4.155 6 C -0.048 4.048 7 H 0.088 0.912 8 N -0.301 5.301 9 C 0.104 3.896 10 H 0.008 0.992 11 C -0.173 4.173 12 C -0.592 4.592 13 H 0.089 0.911 14 C -0.189 4.189 15 N -0.559 5.559 16 Si 0.788 3.212 17 H -0.181 1.181 18 H -0.208 1.208 19 H -0.214 1.214 20 C 0.310 3.690 21 O -0.453 6.453 22 H 0.149 0.851 23 H 0.051 0.949 24 H 0.097 0.903 25 H 0.134 0.866 26 H 0.110 0.890 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.175 0.825 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.032 0.968 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.309 -4.237 14.656 17.372 hybrid contribution -0.322 1.465 -0.878 1.738 sum -8.632 -2.772 13.778 16.493 Atomic orbital electron populations 1.23550 0.79863 1.05474 1.01469 1.90604 1.22180 1.06574 1.96783 1.50609 1.58124 1.09422 1.08519 1.22531 1.03502 0.89654 0.85086 1.23002 1.05673 0.95752 0.91077 1.21960 0.91658 0.91187 1.00027 0.91209 1.60488 1.03441 1.59795 1.06349 1.18999 0.92841 0.92290 0.85490 0.99213 1.21516 0.98263 0.96031 1.01478 1.22142 1.47159 0.92773 0.97147 0.91149 1.25854 0.94636 1.03209 0.95163 1.70083 1.47171 1.37104 1.01570 0.85440 0.77401 0.79833 0.78508 1.18068 1.20806 1.21379 1.22081 0.75955 0.87342 0.83592 1.90643 1.56360 1.74377 1.23938 0.85075 0.94895 0.90300 0.86586 0.88999 0.86909 0.85620 0.82493 0.92569 0.94206 0.96803 0.92977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.14 11.47 113.37 1.30 1.16 16 2 O -0.16 -4.97 11.80 -31.19 -0.37 -5.34 16 3 N -0.49 -15.44 3.52 -459.81 -1.62 -17.06 16 4 C 0.11 2.21 7.66 86.83 0.66 2.88 16 5 C -0.12 -2.40 6.84 31.65 0.22 -2.19 16 6 C 0.07 2.39 3.04 44.91 0.14 2.53 16 7 H 0.07 2.89 7.69 -2.39 -0.02 2.87 16 8 N -0.67 -27.26 6.10 -473.32 -2.89 -30.15 16 9 C 0.21 11.12 2.43 44.17 0.11 11.22 16 10 H -0.01 -0.64 7.85 -2.39 -0.02 -0.66 16 11 C -0.11 -5.96 9.29 71.98 0.67 -5.30 16 12 C -0.55 -29.26 8.35 25.60 0.21 -29.05 16 13 H 0.07 3.44 7.73 -2.91 -0.02 3.42 16 14 C 0.01 0.60 5.30 84.65 0.45 1.05 16 15 N -0.92 -54.56 11.32 21.45 0.24 -54.32 16 16 Si 0.96 42.58 29.54 68.60 2.03 44.61 16 17 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 20 C 0.52 21.66 7.86 87.90 0.69 22.35 16 21 O -0.58 -30.50 17.99 4.58 0.08 -30.42 16 22 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 23 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 25 H 0.12 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.13 2.00 7.53 -2.39 -0.02 1.99 16 29 H 0.35 12.47 7.68 -89.70 -0.69 11.78 16 30 H 0.06 3.22 6.09 -2.38 -0.01 3.21 16 31 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.01 0.66 8.14 -2.39 -0.02 0.65 16 33 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -76.09 281.83 2.34 -73.75 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.41 Total: 14.27 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: 4.45 Total: 4.66 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -4.26 Total: -101.53 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.29 Total: -35.76 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -76.09 2.34 -73.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866551.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.136 kcal (2) G-P(sol) polarization free energy of solvation -76.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds