Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.41595 * 114.00126 * 2 1 4 4 C 1.46764 * 124.35185 * 90.00064 * 3 2 1 5 5 C 1.54472 * 105.47586 * 197.01709 * 4 3 2 6 6 C 1.54625 * 101.76449 * 334.58333 * 5 4 3 7 7 H 1.09005 * 110.49235 * 265.98829 * 6 5 4 8 8 N 1.46900 * 110.48730 * 143.47982 * 6 5 4 9 9 C 1.46901 * 111.00654 * 155.00104 * 8 6 5 10 10 H 1.09000 * 109.46852 * 34.99811 * 9 8 6 11 11 C 1.53001 * 109.46896 * 275.00143 * 9 8 6 12 12 C 1.50694 * 109.47313 * 154.99743 * 9 8 6 13 13 H 1.07994 * 120.00248 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99965 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99577 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00182 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.47097 * 59.99867 * 16 14 12 18 18 H 1.48502 * 109.47363 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47509 * 300.00096 * 16 14 12 20 20 C 1.34420 * 124.35018 * 269.70032 * 3 2 1 21 21 O 1.21291 * 124.94053 * 359.57706 * 20 3 2 22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.99881 * 1 2 3 24 24 H 1.09004 * 109.46926 * 300.00002 * 1 2 3 25 25 H 1.08997 * 110.24583 * 316.02004 * 4 3 2 26 26 H 1.09001 * 110.24478 * 77.92773 * 4 3 2 27 27 H 1.09001 * 110.97384 * 92.70386 * 5 4 3 28 28 H 1.09006 * 110.97010 * 216.46518 * 5 4 3 29 29 H 1.00900 * 111.00201 * 31.04169 * 8 6 5 30 30 H 1.08997 * 109.46603 * 179.97438 * 11 9 8 31 31 H 1.09000 * 109.46858 * 299.99021 * 11 9 8 32 32 H 1.08996 * 109.47452 * 59.99792 * 11 9 8 33 33 H 0.97004 * 119.99537 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3418 2.0501 1.2117 5 6 2.5165 3.5134 0.7487 6 6 2.9007 3.3300 -0.7378 7 1 3.9845 3.3201 -0.8534 8 7 2.3074 4.3951 -1.5573 9 6 3.0841 4.6089 -2.7858 10 1 3.4797 3.6555 -3.1359 11 6 4.2420 5.5663 -2.4969 12 6 2.1935 5.2030 -3.8462 13 1 1.1543 5.4016 -3.6296 14 6 2.7051 5.4922 -5.0935 15 7 3.9702 5.2489 -5.3578 16 14 1.6010 6.2280 -6.4083 17 1 1.0618 7.5271 -5.9318 18 1 2.3862 6.4442 -7.6501 19 1 0.4772 5.2985 -6.6882 20 6 2.3188 1.9840 -1.1098 21 8 2.1565 1.5868 -2.2442 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.5326 1.9783 1.9383 26 1 3.2702 1.6764 1.6437 27 1 1.5825 4.0671 0.8448 28 1 3.3178 4.0043 1.3010 29 1 2.2212 5.2513 -1.0304 30 1 4.8185 5.7245 -3.4083 31 1 3.8463 6.5197 -2.1468 32 1 4.8862 5.1366 -1.7299 33 1 4.3303 5.4527 -6.2352 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930866553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = -15.141426 kcal Electronic energy + Delta-G solvation = -16416.105780 eV Core-core repulsion = 13672.620986 eV Total energy + Delta-G solvation = -2743.484794 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.98074 -36.92277 -36.12384 -34.93900 -32.27392 -29.80647 -28.07491 -26.49923 -25.49525 -24.95642 -21.84475 -20.47552 -19.47140 -17.50685 -16.69816 -16.24208 -15.47963 -14.98285 -14.65250 -14.26038 -13.86545 -13.65019 -13.57793 -13.18381 -12.55853 -12.21179 -12.06720 -11.90429 -11.46938 -11.15423 -10.85982 -10.70161 -10.58717 -10.48039 -10.10710 -9.82242 -9.37900 -8.88556 -8.75291 -8.28065 -7.39636 -5.91206 -3.93345 1.91713 3.05280 3.39955 3.43651 3.47621 4.44131 4.52770 4.60922 4.78586 4.79365 5.15761 5.22592 5.33472 5.41129 5.43616 5.53940 5.61320 5.65649 5.82567 6.04753 6.66322 6.81594 6.93805 7.07210 7.25944 7.33271 7.73896 7.90203 8.28277 8.47708 8.59096 8.65651 9.10995 9.70385 11.16575 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.035895 B = 0.007194 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.858775 B = 3891.379189 C = 4302.526710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.003 4.003 2 O -0.137 6.137 3 N -0.499 5.499 4 C 0.112 3.888 5 C -0.135 4.135 6 C 0.068 3.932 7 H 0.084 0.916 8 N -0.663 5.663 9 C 0.210 3.790 10 H 0.045 0.955 11 C -0.170 4.170 12 C -0.491 4.491 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.898 3.102 17 H -0.278 1.278 18 H -0.289 1.289 19 H -0.278 1.278 20 C 0.528 3.472 21 O -0.486 6.486 22 H 0.101 0.899 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.336 0.664 30 H 0.091 0.909 31 H 0.029 0.971 32 H 0.005 0.995 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.923 -4.222 15.156 16.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.138 6.138 3 N -0.284 5.284 4 C -0.009 4.009 5 C -0.173 4.173 6 C -0.047 4.047 7 H 0.102 0.898 8 N -0.296 5.296 9 C 0.103 3.897 10 H 0.062 0.938 11 C -0.229 4.229 12 C -0.530 4.530 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.203 1.203 20 C 0.314 3.686 21 O -0.355 6.355 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.067 0.933 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.155 0.845 30 H 0.110 0.890 31 H 0.048 0.952 32 H 0.024 0.976 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.259 -5.098 14.023 15.273 hybrid contribution -0.135 0.706 -0.297 0.778 sum -3.394 -4.392 13.726 14.805 Atomic orbital electron populations 1.23307 0.82145 1.03288 1.01379 1.90620 1.19823 1.06666 1.96665 1.50578 1.60037 1.09932 1.07833 1.22136 1.01232 0.90672 0.86885 1.22928 1.03984 0.95083 0.95351 1.21923 0.98479 0.91771 0.92549 0.89819 1.60586 1.53632 1.08186 1.07218 1.19315 0.89594 0.95689 0.85130 0.93761 1.22464 1.00418 0.98867 1.01160 1.21019 0.96309 1.40037 0.95659 0.92098 1.24922 0.95134 0.96098 0.98333 1.69869 1.12797 1.49022 1.22058 0.86556 0.80530 0.79422 0.80824 1.20426 1.21450 1.20323 1.21557 0.77312 0.85877 0.83810 1.90750 1.52112 1.71866 1.20777 0.88048 0.92530 0.93275 0.90519 0.90545 0.88878 0.88790 0.84473 0.89036 0.95173 0.97635 0.93043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 11.47 101.05 1.16 1.12 16 2 O -0.14 -2.20 11.80 -19.41 -0.23 -2.43 16 3 N -0.50 -8.14 3.52 -59.20 -0.21 -8.35 16 4 C 0.11 1.24 7.66 -3.13 -0.02 1.22 16 5 C -0.14 -1.53 6.60 -25.10 -0.17 -1.69 16 6 C 0.07 1.18 3.01 -67.72 -0.20 0.98 16 7 H 0.08 1.48 7.21 -51.93 -0.37 1.10 16 8 N -0.66 -13.85 6.06 -100.97 -0.61 -14.47 16 9 C 0.21 5.39 2.38 -68.87 -0.16 5.22 16 10 H 0.04 1.31 7.39 -51.93 -0.38 0.93 16 11 C -0.17 -4.00 8.92 37.16 0.33 -3.67 16 12 C -0.49 -14.07 8.84 -34.44 -0.30 -14.38 16 13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 14 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 15 N -0.90 -26.54 11.32 55.43 0.63 -25.91 16 16 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.53 10.76 7.84 -10.86 -0.09 10.68 16 21 O -0.49 -12.55 17.49 -2.39 -0.04 -12.59 16 22 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.34 6.15 8.12 -39.29 -0.32 5.83 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 32 H 0.00 0.10 7.50 -51.93 -0.39 -0.29 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 280.50 15.07 4.23 4.23 Total: -1.00 -34.51 280.50 -5.51 -40.02 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -4.70 Total: 1.26 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: 0.45 Total: 0.98 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.19 Total: -48.72 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.27 Total: -15.03 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.51 -5.51 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.882 kcal (2) G-P(sol) polarization free energy of solvation -34.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds