Wall clock time and date at job start Mon Mar 30 2020 02:49:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 N 1.41595 * 114.00126 * 2 1
4 4 C 1.46764 * 124.35185 * 90.00064 * 3 2 1
5 5 C 1.54472 * 105.47586 * 197.01709 * 4 3 2
6 6 C 1.54625 * 101.76449 * 334.58333 * 5 4 3
7 7 H 1.09005 * 110.49235 * 265.98829 * 6 5 4
8 8 N 1.46900 * 110.48730 * 143.47982 * 6 5 4
9 9 C 1.46901 * 111.00654 * 155.00104 * 8 6 5
10 10 H 1.09000 * 109.46852 * 34.99811 * 9 8 6
11 11 C 1.53001 * 109.46896 * 275.00143 * 9 8 6
12 12 C 1.50694 * 109.47313 * 154.99743 * 9 8 6
13 13 H 1.07994 * 120.00248 * 359.97438 * 12 9 8
14 14 C 1.37882 * 119.99965 * 180.02562 * 12 9 8
15 15 N 1.31517 * 119.99577 * 0.02562 * 14 12 9
16 16 Si 1.86795 * 120.00182 * 179.97438 * 14 12 9
17 17 H 1.48502 * 109.47097 * 59.99867 * 16 14 12
18 18 H 1.48502 * 109.47363 * 179.97438 * 16 14 12
19 19 H 1.48498 * 109.47509 * 300.00096 * 16 14 12
20 20 C 1.34420 * 124.35018 * 269.70032 * 3 2 1
21 21 O 1.21291 * 124.94053 * 359.57706 * 20 3 2
22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3
23 23 H 1.09001 * 109.46938 * 59.99881 * 1 2 3
24 24 H 1.09004 * 109.46926 * 300.00002 * 1 2 3
25 25 H 1.08997 * 110.24583 * 316.02004 * 4 3 2
26 26 H 1.09001 * 110.24478 * 77.92773 * 4 3 2
27 27 H 1.09001 * 110.97384 * 92.70386 * 5 4 3
28 28 H 1.09006 * 110.97010 * 216.46518 * 5 4 3
29 29 H 1.00900 * 111.00201 * 31.04169 * 8 6 5
30 30 H 1.08997 * 109.46603 * 179.97438 * 11 9 8
31 31 H 1.09000 * 109.46858 * 299.99021 * 11 9 8
32 32 H 1.08996 * 109.47452 * 59.99792 * 11 9 8
33 33 H 0.97004 * 119.99537 * 180.02562 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 7 2.0050 1.2935 0.0000
4 6 2.3418 2.0501 1.2117
5 6 2.5165 3.5134 0.7487
6 6 2.9007 3.3300 -0.7378
7 1 3.9845 3.3201 -0.8534
8 7 2.3074 4.3951 -1.5573
9 6 3.0841 4.6089 -2.7858
10 1 3.4797 3.6555 -3.1359
11 6 4.2420 5.5663 -2.4969
12 6 2.1935 5.2030 -3.8462
13 1 1.1543 5.4016 -3.6296
14 6 2.7051 5.4922 -5.0935
15 7 3.9702 5.2489 -5.3578
16 14 1.6010 6.2280 -6.4083
17 1 1.0618 7.5271 -5.9318
18 1 2.3862 6.4442 -7.6501
19 1 0.4772 5.2985 -6.6882
20 6 2.3188 1.9840 -1.1098
21 8 2.1565 1.5868 -2.2442
22 1 -0.3634 -1.0277 -0.0005
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3633 0.5139 0.8900
25 1 1.5326 1.9783 1.9383
26 1 3.2702 1.6764 1.6437
27 1 1.5825 4.0671 0.8448
28 1 3.3178 4.0043 1.3010
29 1 2.2212 5.2513 -1.0304
30 1 4.8185 5.7245 -3.4083
31 1 3.8463 6.5197 -2.1468
32 1 4.8862 5.1366 -1.7299
33 1 4.3303 5.4527 -6.2352
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000930866553.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:06
Heat of formation + Delta-G solvation = -15.141426 kcal
Electronic energy + Delta-G solvation = -16416.105780 eV
Core-core repulsion = 13672.620986 eV
Total energy + Delta-G solvation = -2743.484794 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 228.126 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.98074 -36.92277 -36.12384 -34.93900 -32.27392 -29.80647 -28.07491 -26.49923
-25.49525 -24.95642 -21.84475 -20.47552 -19.47140 -17.50685 -16.69816 -16.24208
-15.47963 -14.98285 -14.65250 -14.26038 -13.86545 -13.65019 -13.57793 -13.18381
-12.55853 -12.21179 -12.06720 -11.90429 -11.46938 -11.15423 -10.85982 -10.70161
-10.58717 -10.48039 -10.10710 -9.82242 -9.37900 -8.88556 -8.75291 -8.28065
-7.39636 -5.91206 -3.93345 1.91713 3.05280 3.39955 3.43651 3.47621
4.44131 4.52770 4.60922 4.78586 4.79365 5.15761 5.22592 5.33472
5.41129 5.43616 5.53940 5.61320 5.65649 5.82567 6.04753 6.66322
6.81594 6.93805 7.07210 7.25944 7.33271 7.73896 7.90203 8.28277
8.47708 8.59096 8.65651 9.10995 9.70385 11.16575
Molecular weight = 228.13amu
Principal moments of inertia in cm(-1)
A = 0.035895 B = 0.007194 C = 0.006506
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 779.858775 B = 3891.379189 C = 4302.526710
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.003 4.003
2 O -0.137 6.137
3 N -0.499 5.499
4 C 0.112 3.888
5 C -0.135 4.135
6 C 0.068 3.932
7 H 0.084 0.916
8 N -0.663 5.663
9 C 0.210 3.790
10 H 0.045 0.955
11 C -0.170 4.170
12 C -0.491 4.491
13 H 0.061 0.939
14 C 0.056 3.944
15 N -0.898 5.898
16 Si 0.898 3.102
17 H -0.278 1.278
18 H -0.289 1.289
19 H -0.278 1.278
20 C 0.528 3.472
21 O -0.486 6.486
22 H 0.101 0.899
23 H 0.056 0.944
24 H 0.049 0.951
25 H 0.076 0.924
26 H 0.076 0.924
27 H 0.093 0.907
28 H 0.094 0.906
29 H 0.336 0.664
30 H 0.091 0.909
31 H 0.029 0.971
32 H 0.005 0.995
33 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.923 -4.222 15.156 16.002
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.101 4.101
2 O -0.138 6.138
3 N -0.284 5.284
4 C -0.009 4.009
5 C -0.173 4.173
6 C -0.047 4.047
7 H 0.102 0.898
8 N -0.296 5.296
9 C 0.103 3.897
10 H 0.062 0.938
11 C -0.229 4.229
12 C -0.530 4.530
13 H 0.079 0.921
14 C -0.145 4.145
15 N -0.537 5.537
16 Si 0.727 3.273
17 H -0.204 1.204
18 H -0.215 1.215
19 H -0.203 1.203
20 C 0.314 3.686
21 O -0.355 6.355
22 H 0.120 0.880
23 H 0.075 0.925
24 H 0.067 0.933
25 H 0.095 0.905
26 H 0.095 0.905
27 H 0.111 0.889
28 H 0.112 0.888
29 H 0.155 0.845
30 H 0.110 0.890
31 H 0.048 0.952
32 H 0.024 0.976
33 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -3.259 -5.098 14.023 15.273
hybrid contribution -0.135 0.706 -0.297 0.778
sum -3.394 -4.392 13.726 14.805
Atomic orbital electron populations
1.23307 0.82145 1.03288 1.01379 1.90620 1.19823 1.06666 1.96665
1.50578 1.60037 1.09932 1.07833 1.22136 1.01232 0.90672 0.86885
1.22928 1.03984 0.95083 0.95351 1.21923 0.98479 0.91771 0.92549
0.89819 1.60586 1.53632 1.08186 1.07218 1.19315 0.89594 0.95689
0.85130 0.93761 1.22464 1.00418 0.98867 1.01160 1.21019 0.96309
1.40037 0.95659 0.92098 1.24922 0.95134 0.96098 0.98333 1.69869
1.12797 1.49022 1.22058 0.86556 0.80530 0.79422 0.80824 1.20426
1.21450 1.20323 1.21557 0.77312 0.85877 0.83810 1.90750 1.52112
1.71866 1.20777 0.88048 0.92530 0.93275 0.90519 0.90545 0.88878
0.88790 0.84473 0.89036 0.95173 0.97635 0.93043
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.00 -0.04 11.47 101.05 1.16 1.12 16
2 O -0.14 -2.20 11.80 -19.41 -0.23 -2.43 16
3 N -0.50 -8.14 3.52 -59.20 -0.21 -8.35 16
4 C 0.11 1.24 7.66 -3.13 -0.02 1.22 16
5 C -0.14 -1.53 6.60 -25.10 -0.17 -1.69 16
6 C 0.07 1.18 3.01 -67.72 -0.20 0.98 16
7 H 0.08 1.48 7.21 -51.93 -0.37 1.10 16
8 N -0.66 -13.85 6.06 -100.97 -0.61 -14.47 16
9 C 0.21 5.39 2.38 -68.87 -0.16 5.22 16
10 H 0.04 1.31 7.39 -51.93 -0.38 0.93 16
11 C -0.17 -4.00 8.92 37.16 0.33 -3.67 16
12 C -0.49 -14.07 8.84 -34.44 -0.30 -14.38 16
13 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16
14 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16
15 N -0.90 -26.54 11.32 55.43 0.63 -25.91 16
16 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16
17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16
18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16
20 C 0.53 10.76 7.84 -10.86 -0.09 10.68 16
21 O -0.49 -12.55 17.49 -2.39 -0.04 -12.59 16
22 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16
23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16
25 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16
26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16
27 H 0.09 1.00 8.04 -51.93 -0.42 0.58 16
28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
29 H 0.34 6.15 8.12 -39.29 -0.32 5.83 16
30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16
31 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16
32 H 0.00 0.10 7.50 -51.93 -0.39 -0.29 16
33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16
LS Contribution 280.50 15.07 4.23 4.23
Total: -1.00 -34.51 280.50 -5.51 -40.02
By element:
Atomic # 1 Polarization: 5.97 SS G_CDS: -4.70 Total: 1.26 kcal
Atomic # 6 Polarization: 0.53 SS G_CDS: 0.45 Total: 0.98 kcal
Atomic # 7 Polarization: -48.53 SS G_CDS: -0.19 Total: -48.72 kcal
Atomic # 8 Polarization: -14.75 SS G_CDS: -0.27 Total: -15.03 kcal
Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal
Total LS contribution 4.23 Total: 4.23 kcal
Total: -34.51 -5.51 -40.02 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930866553.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.882 kcal
(2) G-P(sol) polarization free energy of solvation -34.513 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.631 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.510 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal
(6) G-S(sol) free energy of system = (1) + (5) -15.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds