Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 N 1.41595 * 114.00126 * 2 1 4 4 C 1.46764 * 124.35185 * 90.00064 * 3 2 1 5 5 C 1.54472 * 105.47586 * 197.01709 * 4 3 2 6 6 C 1.54625 * 101.76449 * 334.58333 * 5 4 3 7 7 H 1.09005 * 110.49235 * 265.98829 * 6 5 4 8 8 N 1.46900 * 110.48730 * 143.47982 * 6 5 4 9 9 C 1.46901 * 111.00654 * 155.00104 * 8 6 5 10 10 H 1.09000 * 109.46852 * 34.99811 * 9 8 6 11 11 C 1.53001 * 109.46896 * 275.00143 * 9 8 6 12 12 C 1.50694 * 109.47313 * 154.99743 * 9 8 6 13 13 H 1.07994 * 120.00248 * 359.97438 * 12 9 8 14 14 C 1.37882 * 119.99965 * 180.02562 * 12 9 8 15 15 N 1.31517 * 119.99577 * 0.02562 * 14 12 9 16 16 Si 1.86795 * 120.00182 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.47097 * 59.99867 * 16 14 12 18 18 H 1.48502 * 109.47363 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47509 * 300.00096 * 16 14 12 20 20 C 1.34420 * 124.35018 * 269.70032 * 3 2 1 21 21 O 1.21291 * 124.94053 * 359.57706 * 20 3 2 22 22 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.46938 * 59.99881 * 1 2 3 24 24 H 1.09004 * 109.46926 * 300.00002 * 1 2 3 25 25 H 1.08997 * 110.24583 * 316.02004 * 4 3 2 26 26 H 1.09001 * 110.24478 * 77.92773 * 4 3 2 27 27 H 1.09001 * 110.97384 * 92.70386 * 5 4 3 28 28 H 1.09006 * 110.97010 * 216.46518 * 5 4 3 29 29 H 1.00900 * 111.00201 * 31.04169 * 8 6 5 30 30 H 1.08997 * 109.46603 * 179.97438 * 11 9 8 31 31 H 1.09000 * 109.46858 * 299.99021 * 11 9 8 32 32 H 1.08996 * 109.47452 * 59.99792 * 11 9 8 33 33 H 0.97004 * 119.99537 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3418 2.0501 1.2117 5 6 2.5165 3.5134 0.7487 6 6 2.9007 3.3300 -0.7378 7 1 3.9845 3.3201 -0.8534 8 7 2.3074 4.3951 -1.5573 9 6 3.0841 4.6089 -2.7858 10 1 3.4797 3.6555 -3.1359 11 6 4.2420 5.5663 -2.4969 12 6 2.1935 5.2030 -3.8462 13 1 1.1543 5.4016 -3.6296 14 6 2.7051 5.4922 -5.0935 15 7 3.9702 5.2489 -5.3578 16 14 1.6010 6.2280 -6.4083 17 1 1.0618 7.5271 -5.9318 18 1 2.3862 6.4442 -7.6501 19 1 0.4772 5.2985 -6.6882 20 6 2.3188 1.9840 -1.1098 21 8 2.1565 1.5868 -2.2442 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5139 0.8900 25 1 1.5326 1.9783 1.9383 26 1 3.2702 1.6764 1.6437 27 1 1.5825 4.0671 0.8448 28 1 3.3178 4.0043 1.3010 29 1 2.2212 5.2513 -1.0304 30 1 4.8185 5.7245 -3.4083 31 1 3.8463 6.5197 -2.1468 32 1 4.8862 5.1366 -1.7299 33 1 4.3303 5.4527 -6.2352 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930866553.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = -42.152772 kcal Electronic energy + Delta-G solvation = -16417.277079 eV Core-core repulsion = 13672.620986 eV Total energy + Delta-G solvation = -2744.656094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.35677 -38.26774 -37.75336 -36.50802 -34.22873 -31.32023 -29.50779 -27.63129 -27.26017 -26.73370 -23.00952 -22.31175 -20.93001 -18.87356 -18.32368 -17.91637 -16.79424 -16.75416 -16.18685 -15.74545 -15.31492 -15.06963 -14.78634 -14.72457 -14.22954 -13.68056 -13.62074 -13.14756 -13.00709 -12.84616 -12.74888 -12.36190 -12.14680 -12.04072 -11.87051 -11.64492 -11.10551 -10.72437 -10.46572 -10.01987 -9.07557 -8.09002 -6.19234 0.72577 1.40046 1.43987 1.50570 1.53643 2.43970 3.19824 3.34077 3.43881 3.59615 3.69229 4.14503 4.23156 4.32366 4.34952 4.49725 4.63391 4.65606 4.77779 4.90744 4.98737 5.04815 5.12493 5.44282 5.69473 5.78283 5.83272 5.92692 6.27847 6.58146 6.82474 6.94254 7.20038 7.49276 8.97061 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.035895 B = 0.007194 C = 0.006506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.858775 B = 3891.379189 C = 4302.526710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.159 6.159 3 N -0.494 5.494 4 C 0.107 3.893 5 C -0.114 4.114 6 C 0.062 3.938 7 H 0.080 0.920 8 N -0.671 5.671 9 C 0.218 3.782 10 H -0.007 1.007 11 C -0.155 4.155 12 C -0.514 4.514 13 H 0.052 0.948 14 C 0.005 3.995 15 N -0.924 5.924 16 Si 0.960 3.040 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.282 1.282 20 C 0.511 3.489 21 O -0.564 6.564 22 H 0.132 0.868 23 H 0.026 0.974 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.104 0.896 28 H 0.135 0.865 29 H 0.352 0.648 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.034 0.966 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.599 -3.486 17.913 18.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 O -0.160 6.160 3 N -0.277 5.277 4 C -0.012 4.012 5 C -0.152 4.152 6 C -0.052 4.052 7 H 0.098 0.902 8 N -0.305 5.305 9 C 0.110 3.890 10 H 0.011 0.989 11 C -0.214 4.214 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.193 4.193 15 N -0.564 5.564 16 Si 0.786 3.214 17 H -0.187 1.187 18 H -0.208 1.208 19 H -0.208 1.208 20 C 0.299 3.701 21 O -0.439 6.439 22 H 0.150 0.850 23 H 0.045 0.955 24 H 0.096 0.904 25 H 0.130 0.870 26 H 0.121 0.879 27 H 0.122 0.878 28 H 0.153 0.847 29 H 0.174 0.826 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.945 -4.350 16.880 17.872 hybrid contribution 0.045 0.367 -1.055 1.118 sum -3.900 -3.983 15.825 16.778 Atomic orbital electron populations 1.23505 0.80055 1.05325 1.01229 1.90566 1.21984 1.06687 1.96777 1.50660 1.58670 1.09746 1.08612 1.22612 1.03869 0.89460 0.85241 1.23002 1.05934 0.95883 0.90402 1.22036 0.97891 0.89251 0.96056 0.90198 1.60253 1.53528 1.09853 1.06866 1.18946 0.90110 0.93208 0.86779 0.98945 1.22222 0.99606 0.99121 1.00494 1.21403 0.96409 1.40299 0.97196 0.92931 1.25740 0.96489 0.96573 1.00475 1.70015 1.14230 1.49726 1.22445 0.85583 0.78522 0.79021 0.78291 1.18726 1.20782 1.20822 1.22204 0.76928 0.87257 0.83679 1.90696 1.55508 1.73782 1.23925 0.84985 0.95493 0.90417 0.86986 0.87920 0.87753 0.84669 0.82627 0.92332 0.93786 0.94722 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.09 11.47 113.37 1.30 1.21 16 2 O -0.16 -4.96 11.80 -31.18 -0.37 -5.32 16 3 N -0.49 -15.43 3.52 -459.81 -1.62 -17.05 16 4 C 0.11 1.91 7.66 86.83 0.66 2.57 16 5 C -0.11 -2.10 6.60 31.65 0.21 -1.89 16 6 C 0.06 2.11 3.01 44.91 0.13 2.25 16 7 H 0.08 2.77 7.21 -2.38 -0.02 2.75 16 8 N -0.67 -27.90 6.06 -473.35 -2.87 -30.77 16 9 C 0.22 11.49 2.38 44.17 0.11 11.59 16 10 H -0.01 -0.47 7.39 -2.39 -0.02 -0.48 16 11 C -0.15 -7.30 8.92 71.98 0.64 -6.66 16 12 C -0.51 -30.20 8.84 25.60 0.23 -29.97 16 13 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 14 C 0.01 0.29 5.30 84.66 0.45 0.74 16 15 N -0.92 -56.17 11.32 21.45 0.24 -55.92 16 16 Si 0.96 46.34 29.54 68.60 2.03 48.37 16 17 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 19 H -0.28 -13.74 7.11 99.48 0.71 -13.03 16 20 C 0.51 21.22 7.84 87.90 0.69 21.91 16 21 O -0.56 -30.95 17.49 4.53 0.08 -30.88 16 22 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 23 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 25 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.10 1.75 8.04 -2.39 -0.02 1.73 16 28 H 0.14 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.35 12.30 8.12 -89.69 -0.73 11.57 16 30 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 31 H 0.04 1.90 8.13 -2.39 -0.02 1.88 16 32 H 0.03 1.38 7.50 -2.39 -0.02 1.36 16 33 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -81.18 280.50 2.29 -78.89 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.38 Total: 10.93 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 4.42 Total: 1.76 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -4.24 Total: -103.74 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.29 Total: -36.20 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -81.18 2.29 -78.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866553.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.734 kcal (2) G-P(sol) polarization free energy of solvation -81.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds