Wall clock time and date at job start Mon Mar 30 2020 02:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 N 1.41609 * 114.00039 * 2 1 4 4 C 1.46756 * 124.34782 * 89.99527 * 3 2 1 5 5 C 1.54487 * 105.47255 * 162.96453 * 4 3 2 6 6 C 1.54626 * 101.76119 * 25.41844 * 5 4 3 7 7 H 1.09001 * 110.48509 * 216.52662 * 6 5 4 8 8 N 1.46907 * 110.48931 * 93.88235 * 6 5 4 9 9 C 1.46897 * 111.00284 * 154.99678 * 8 6 5 10 10 H 1.09003 * 109.46989 * 325.00367 * 9 8 6 11 11 C 1.53002 * 109.46702 * 84.99897 * 9 8 6 12 12 C 1.50699 * 109.47103 * 204.99856 * 9 8 6 13 13 H 1.07998 * 119.99668 * 0.02562 * 12 9 8 14 14 C 1.37879 * 120.00013 * 179.97438 * 12 9 8 15 15 N 1.31511 * 119.99715 * 0.02562 * 14 12 9 16 16 Si 1.86799 * 119.99780 * 180.02562 * 14 12 9 17 17 H 1.48498 * 109.47321 * 60.00407 * 16 14 12 18 18 H 1.48502 * 109.46934 * 180.02562 * 16 14 12 19 19 H 1.48492 * 109.47204 * 299.99873 * 16 14 12 20 20 C 1.34415 * 124.34883 * 269.98016 * 3 2 1 21 21 O 1.21282 * 124.94358 * 0.38757 * 20 3 2 22 22 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47540 * 300.00105 * 1 2 3 24 24 H 1.09002 * 109.47288 * 59.99883 * 1 2 3 25 25 H 1.09002 * 110.24543 * 43.97216 * 4 3 2 26 26 H 1.08993 * 110.32355 * 282.00205 * 4 3 2 27 27 H 1.08996 * 110.96940 * 143.53836 * 5 4 3 28 28 H 1.08997 * 110.97180 * 267.30251 * 5 4 3 29 29 H 1.00905 * 110.99663 * 278.95368 * 8 6 5 30 30 H 1.09003 * 109.47015 * 60.00485 * 11 9 8 31 31 H 1.09002 * 109.46700 * 179.97438 * 11 9 8 32 32 H 1.08993 * 109.47367 * 300.00061 * 11 9 8 33 33 H 0.97003 * 120.00061 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2937 0.0000 4 6 2.3416 2.0501 1.2117 5 6 3.3128 3.1588 0.7488 6 6 2.9197 3.3216 -0.7378 7 1 3.8018 3.5228 -1.3458 8 7 1.9304 4.3964 -0.8934 9 6 1.9797 4.9655 -2.2468 10 1 3.0096 4.9657 -2.6035 11 6 1.1147 4.1227 -3.1861 12 6 1.4581 6.3791 -2.2166 13 1 1.1240 6.8115 -1.2851 14 6 1.4086 7.1205 -3.3780 15 7 1.8161 6.5940 -4.5121 16 14 0.7628 8.8730 -3.3404 17 1 1.6025 9.6905 -2.4284 18 1 0.8125 9.4482 -4.7085 19 1 -0.6404 8.8731 -2.8546 20 6 2.3138 1.9863 -1.1098 21 8 2.1335 1.5972 -2.2442 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 2.8296 1.4006 1.9384 26 1 1.4438 2.4916 1.6440 27 1 3.1416 4.0828 1.3010 28 1 4.3490 2.8349 0.8450 29 1 1.0021 4.0681 -0.6727 30 1 0.0847 4.1225 -2.8293 31 1 1.1509 4.5452 -4.1903 32 1 1.4919 3.1003 -3.2079 33 1 1.7809 7.1155 -5.3292 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930866554.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:07 Heat of formation + Delta-G solvation = -38.132605 kcal Electronic energy + Delta-G solvation = -16573.358338 eV Core-core repulsion = 13828.876572 eV Total energy + Delta-G solvation = -2744.481766 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.58068 -38.33284 -37.74991 -36.51657 -34.14648 -31.28842 -29.58183 -27.63545 -27.25430 -26.91483 -22.75362 -22.29171 -21.46265 -18.91035 -18.41831 -17.66653 -16.98831 -16.78207 -16.14609 -15.92972 -15.49779 -15.03486 -14.81884 -14.54514 -14.13282 -13.91470 -13.61583 -13.07399 -12.85612 -12.84596 -12.65447 -12.26712 -12.22700 -12.11053 -11.89328 -11.78272 -11.18412 -10.70486 -10.45053 -10.03649 -9.21538 -8.07996 -6.21240 0.70224 1.30562 1.45505 1.47735 1.55416 2.45097 3.20242 3.24353 3.43038 3.46286 3.77775 4.10625 4.22247 4.28441 4.32672 4.52864 4.59946 4.68504 4.75347 4.98648 5.07505 5.14406 5.24063 5.36692 5.63460 5.68420 5.75593 5.92653 6.20583 6.45745 6.57418 6.90981 7.05932 7.48205 8.97723 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.006894 C = 0.006554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.514924 B = 4060.353048 C = 4271.222961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.156 6.156 3 N -0.485 5.485 4 C 0.102 3.898 5 C -0.104 4.104 6 C 0.062 3.938 7 H 0.100 0.900 8 N -0.637 5.637 9 C 0.217 3.783 10 H 0.008 0.992 11 C -0.176 4.176 12 C -0.517 4.517 13 H 0.065 0.935 14 C 0.005 3.995 15 N -0.925 5.925 16 Si 0.966 3.034 17 H -0.267 1.267 18 H -0.289 1.289 19 H -0.272 1.272 20 C 0.478 3.522 21 O -0.558 6.558 22 H 0.134 0.866 23 H 0.074 0.926 24 H 0.028 0.972 25 H 0.115 0.885 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.332 0.668 30 H 0.017 0.983 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -8.564 14.530 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 O -0.157 6.157 3 N -0.267 5.267 4 C -0.017 4.017 5 C -0.142 4.142 6 C -0.053 4.053 7 H 0.118 0.882 8 N -0.267 5.267 9 C 0.109 3.891 10 H 0.026 0.974 11 C -0.235 4.235 12 C -0.555 4.555 13 H 0.084 0.916 14 C -0.193 4.193 15 N -0.565 5.565 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.197 1.197 20 C 0.266 3.734 21 O -0.435 6.435 22 H 0.151 0.849 23 H 0.092 0.908 24 H 0.047 0.953 25 H 0.134 0.866 26 H 0.108 0.892 27 H 0.142 0.858 28 H 0.130 0.870 29 H 0.150 0.850 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.265 -8.500 14.044 16.418 hybrid contribution -1.243 -0.084 -1.338 1.828 sum -0.977 -8.583 12.706 15.365 Atomic orbital electron populations 1.23513 0.80108 1.05460 1.01182 1.90583 1.21847 1.06485 1.96785 1.50794 1.57884 1.09331 1.08706 1.22658 1.00570 0.93046 0.85378 1.22790 1.00258 0.99714 0.91466 1.22612 0.97277 0.84377 1.00987 0.88245 1.61127 1.08489 1.27972 1.29108 1.19057 0.94279 0.92838 0.82940 0.97443 1.22575 0.98061 0.99397 1.03512 1.21419 1.41862 0.97882 0.94378 0.91648 1.25819 0.95847 1.02621 0.95051 1.70060 1.48677 1.38319 0.99487 0.85485 0.78955 0.79504 0.76885 1.19153 1.21449 1.19679 1.23163 0.78520 0.87705 0.84054 1.90608 1.56485 1.73236 1.23140 0.84866 0.90752 0.95299 0.86643 0.89161 0.85838 0.87003 0.85045 0.96406 0.92610 0.93345 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.12 11.47 113.37 1.30 1.18 16 2 O -0.16 -4.54 11.80 -31.21 -0.37 -4.91 16 3 N -0.49 -14.23 3.52 -459.82 -1.62 -15.85 16 4 C 0.10 1.92 7.66 86.84 0.67 2.59 16 5 C -0.10 -2.13 6.89 31.65 0.22 -1.91 16 6 C 0.06 2.09 3.24 44.91 0.15 2.23 16 7 H 0.10 3.65 7.45 -2.39 -0.02 3.63 16 8 N -0.64 -25.48 6.07 -473.34 -2.87 -28.36 16 9 C 0.22 11.22 2.57 44.17 0.11 11.33 16 10 H 0.01 0.44 7.44 -2.39 -0.02 0.42 16 11 C -0.18 -9.46 8.75 71.98 0.63 -8.83 16 12 C -0.52 -28.55 8.84 25.60 0.23 -28.32 16 13 H 0.07 3.50 7.81 -2.91 -0.02 3.47 16 14 C 0.00 0.26 5.30 84.66 0.45 0.71 16 15 N -0.93 -55.18 11.32 21.45 0.24 -54.94 16 16 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 C 0.48 17.94 7.14 87.90 0.63 18.57 16 21 O -0.56 -26.54 14.95 4.55 0.07 -26.48 16 22 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 23 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.12 2.26 8.08 -2.39 -0.02 2.24 16 28 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.33 12.87 8.18 -89.69 -0.73 12.14 16 30 H 0.02 0.89 8.13 -2.39 -0.02 0.87 16 31 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 32 H 0.05 2.58 4.48 -2.39 -0.01 2.57 16 33 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -72.30 275.18 2.23 -70.07 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.38 Total: 16.93 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: 4.38 Total: -2.45 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -4.25 Total: -99.15 kcal Atomic # 8 Polarization: -31.08 SS G_CDS: -0.30 Total: -31.38 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.30 2.23 -70.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930866554.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.938 kcal (2) G-P(sol) polarization free energy of solvation -72.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds