Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00123 * 2 1 4 4 O 1.21278 * 119.99796 * 355.04083 * 3 2 1 5 5 C 1.50696 * 120.00073 * 175.03693 * 3 2 1 6 6 N 1.46497 * 109.54354 * 35.42605 * 5 3 2 7 7 C 1.36940 * 120.00219 * 64.43139 * 6 5 3 8 8 H 1.08000 * 119.99787 * 354.96483 * 7 6 5 9 9 C 1.38811 * 120.00455 * 174.95878 * 7 6 5 10 10 N 1.31616 * 120.00157 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99787 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47268 * 269.99963 * 11 9 7 13 13 H 1.48503 * 109.46887 * 30.00066 * 11 9 7 14 14 H 1.48497 * 109.47056 * 149.99981 * 11 9 7 15 15 C 1.53181 * 109.61390 * 155.64641 * 5 3 2 16 16 C 1.53094 * 109.16129 * 176.89468 * 15 5 3 17 17 O 1.42906 * 109.41351 * 302.38932 * 16 15 5 18 18 C 1.42901 * 114.09497 * 61.16232 * 17 16 15 19 19 C 1.53098 * 109.41457 * 298.83729 * 18 17 16 20 20 H 1.09003 * 109.47287 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46560 * 299.99615 * 1 2 3 22 22 H 1.08992 * 109.47594 * 59.99800 * 1 2 3 23 23 H 0.96996 * 120.00290 * 180.02562 * 2 1 3 24 24 H 0.96992 * 120.00255 * 244.43111 * 6 5 3 25 25 H 0.97000 * 119.99736 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.52327 * 296.79491 * 15 5 3 27 27 H 1.09000 * 109.52165 * 56.98693 * 15 5 3 28 28 H 1.08996 * 109.47912 * 182.41198 * 16 15 5 29 29 H 1.08995 * 109.49099 * 62.38041 * 16 15 5 30 30 H 1.09000 * 109.48117 * 178.85957 * 18 17 16 31 31 H 1.08994 * 109.49243 * 58.83034 * 18 17 16 32 32 H 1.08994 * 109.52288 * 297.70360 * 19 18 17 33 33 H 1.09003 * 109.52233 * 177.51625 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5359 2.2155 -0.0908 5 6 3.6416 1.1696 0.1129 6 7 4.1884 0.0119 -0.5990 7 6 4.0366 -0.0919 -1.9560 8 1 3.4447 0.6365 -2.4903 9 6 4.6434 -1.1332 -2.6447 10 7 4.4978 -1.2326 -3.9490 11 14 5.6666 -2.3933 -1.7204 12 1 7.0790 -1.9381 -1.6630 13 1 5.1385 -2.5437 -0.3406 14 1 5.5958 -3.6998 -2.4227 15 6 4.2011 2.4580 -0.4982 16 6 5.7200 2.4857 -0.3088 17 8 6.0270 2.3873 1.0834 18 6 5.5697 1.1809 1.6978 19 6 4.0447 1.1008 1.5890 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.9500 -0.8400 -0.0004 24 1 4.6581 -0.6812 -0.1092 25 1 4.9222 -1.9600 -4.4303 26 1 3.9662 2.4885 -1.5621 27 1 3.7562 3.3201 -0.0011 28 1 6.1186 3.4202 -0.7037 29 1 6.1681 1.6461 -0.8401 30 1 5.8599 1.1754 2.7484 31 1 6.0157 0.3240 1.1930 32 1 3.5967 1.9353 2.1283 33 1 3.6978 0.1606 2.0179 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176186295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = -68.918086 kcal Electronic energy + Delta-G solvation = -17191.612332 eV Core-core repulsion = 14445.795607 eV Total energy + Delta-G solvation = -2745.816725 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.96470 -37.99684 -35.03629 -33.93927 -32.31028 -30.71782 -29.80682 -26.96953 -24.63245 -23.40291 -22.88481 -20.45704 -18.69504 -17.93580 -16.97169 -15.80746 -15.55126 -15.06679 -14.76495 -14.46219 -14.33818 -13.73840 -13.29943 -12.91489 -12.57344 -12.36843 -12.11234 -11.90363 -11.83610 -11.20229 -11.07344 -10.85962 -10.49417 -10.23576 -10.07422 -9.71975 -9.59333 -9.28683 -8.75658 -8.50017 -7.47838 -5.93134 -3.34364 3.20381 3.24971 3.30119 3.34937 3.88621 4.29296 4.41605 4.98820 5.15404 5.19024 5.34676 5.43408 5.51379 5.63125 5.65887 5.81548 5.90414 5.94255 6.06683 6.15961 6.22772 6.25820 6.45347 6.65431 6.81419 7.05156 7.62564 7.79209 8.11509 8.26333 8.87524 9.01810 9.70109 9.87743 11.23929 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.014287 C = 0.010209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.045878 B = 1959.307963 C = 2742.103238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.721 5.721 3 C 0.517 3.483 4 O -0.564 6.564 5 C 0.191 3.809 6 N -0.737 5.737 7 C -0.252 4.252 8 H 0.092 0.908 9 C 0.016 3.984 10 N -0.923 5.923 11 Si 0.880 3.120 12 H -0.282 1.282 13 H -0.277 1.277 14 H -0.290 1.290 15 C -0.138 4.138 16 C 0.068 3.932 17 O -0.390 6.390 18 C 0.069 3.931 19 C -0.151 4.151 20 H 0.067 0.933 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.408 0.592 24 H 0.365 0.635 25 H 0.262 0.738 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.106 1.006 10.820 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.372 5.372 3 C 0.302 3.698 4 O -0.442 6.442 5 C 0.097 3.903 6 N -0.383 5.383 7 C -0.382 4.382 8 H 0.110 0.890 9 C -0.181 4.181 10 N -0.569 5.569 11 Si 0.710 3.290 12 H -0.208 1.208 13 H -0.204 1.204 14 H -0.216 1.216 15 C -0.177 4.177 16 C -0.009 4.009 17 O -0.309 6.309 18 C -0.008 4.008 19 C -0.189 4.189 20 H 0.086 0.914 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.243 0.757 24 H 0.200 0.800 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.511 1.915 10.597 10.874 hybrid contribution 0.613 -1.758 0.184 1.871 sum -0.898 0.157 10.781 10.820 Atomic orbital electron populations 1.21418 0.81258 1.01362 1.01411 1.45660 1.06495 1.09866 1.75213 1.21720 0.91264 0.82938 0.73851 1.90588 1.70949 1.32099 1.50602 1.19713 0.88555 0.90173 0.91877 1.42925 1.67993 1.21406 1.05957 1.18936 1.27252 1.10758 0.81222 0.89004 1.24667 0.99625 0.98630 0.95152 1.69695 1.47753 1.33493 1.05975 0.86653 0.81253 0.82044 0.79051 1.20816 1.20374 1.21636 1.22243 0.95915 0.96621 1.02961 1.22546 0.94967 1.02117 0.81228 1.87825 1.79225 1.39737 1.24085 1.22424 0.92534 0.88092 0.97785 1.22332 0.98108 1.02997 0.95491 0.91395 0.93185 0.92705 0.75683 0.80028 0.92802 0.89902 0.91316 0.89651 0.91493 0.89398 0.92903 0.90249 0.90777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.34 10.71 59.85 0.64 1.98 16 2 N -0.72 -12.81 5.63 -67.08 -0.38 -13.19 16 3 C 0.52 10.47 6.24 -10.99 -0.07 10.40 16 4 O -0.56 -12.88 16.05 5.56 0.09 -12.80 16 5 C 0.19 3.63 0.69 -132.79 -0.09 3.54 16 6 N -0.74 -15.35 3.19 -48.14 -0.15 -15.51 16 7 C -0.25 -6.40 9.22 -15.06 -0.14 -6.54 16 8 H 0.09 2.65 7.39 -52.49 -0.39 2.26 16 9 C 0.02 0.44 5.50 -17.43 -0.10 0.34 16 10 N -0.92 -27.23 13.97 55.49 0.78 -26.46 16 11 Si 0.88 20.13 27.79 -169.99 -4.72 15.41 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.28 -5.76 6.45 56.52 0.36 -5.40 16 14 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 15 C -0.14 -2.67 4.34 -26.59 -0.12 -2.78 16 16 C 0.07 1.21 6.68 37.21 0.25 1.46 16 17 O -0.39 -6.70 10.77 -35.23 -0.38 -7.08 16 18 C 0.07 1.04 6.67 37.21 0.25 1.28 16 19 C -0.15 -2.34 4.93 -26.59 -0.13 -2.47 16 20 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 21 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.41 7.02 8.13 -40.82 -0.33 6.69 16 24 H 0.37 7.34 4.72 -40.82 -0.19 7.15 16 25 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.08 1.80 7.06 -51.93 -0.37 1.43 16 27 H 0.07 1.32 7.78 -51.93 -0.40 0.91 16 28 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.31 7.75 -51.93 -0.40 0.91 16 30 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 0.83 7.19 -51.93 -0.37 0.45 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 268.35 15.07 4.04 4.04 Total: -1.00 -30.61 268.35 -4.82 -35.42 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -4.59 Total: 12.95 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 0.50 Total: 7.20 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: 0.24 Total: -55.15 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.29 Total: -19.88 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -4.72 Total: 15.41 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -30.61 -4.82 -35.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176186295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.493 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds