Wall clock time and date at job start Mon Mar 30 2020 03:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00123 * 2 1 4 4 O 1.21278 * 119.99796 * 355.04083 * 3 2 1 5 5 C 1.50696 * 120.00073 * 175.03693 * 3 2 1 6 6 N 1.46497 * 109.54354 * 35.42605 * 5 3 2 7 7 C 1.36940 * 120.00219 * 64.43139 * 6 5 3 8 8 H 1.08000 * 119.99787 * 354.96483 * 7 6 5 9 9 C 1.38811 * 120.00455 * 174.95878 * 7 6 5 10 10 N 1.31616 * 120.00157 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99787 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47268 * 269.99963 * 11 9 7 13 13 H 1.48503 * 109.46887 * 30.00066 * 11 9 7 14 14 H 1.48497 * 109.47056 * 149.99981 * 11 9 7 15 15 C 1.53181 * 109.61390 * 155.64641 * 5 3 2 16 16 C 1.53094 * 109.16129 * 176.89468 * 15 5 3 17 17 O 1.42906 * 109.41351 * 302.38932 * 16 15 5 18 18 C 1.42901 * 114.09497 * 61.16232 * 17 16 15 19 19 C 1.53098 * 109.41457 * 298.83729 * 18 17 16 20 20 H 1.09003 * 109.47287 * 180.02562 * 1 2 3 21 21 H 1.09009 * 109.46560 * 299.99615 * 1 2 3 22 22 H 1.08992 * 109.47594 * 59.99800 * 1 2 3 23 23 H 0.96996 * 120.00290 * 180.02562 * 2 1 3 24 24 H 0.96992 * 120.00255 * 244.43111 * 6 5 3 25 25 H 0.97000 * 119.99736 * 179.97438 * 10 9 7 26 26 H 1.08996 * 109.52327 * 296.79491 * 15 5 3 27 27 H 1.09000 * 109.52165 * 56.98693 * 15 5 3 28 28 H 1.08996 * 109.47912 * 182.41198 * 16 15 5 29 29 H 1.08995 * 109.49099 * 62.38041 * 16 15 5 30 30 H 1.09000 * 109.48117 * 178.85957 * 18 17 16 31 31 H 1.08994 * 109.49243 * 58.83034 * 18 17 16 32 32 H 1.08994 * 109.52288 * 297.70360 * 19 18 17 33 33 H 1.09003 * 109.52233 * 177.51625 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5359 2.2155 -0.0908 5 6 3.6416 1.1696 0.1129 6 7 4.1884 0.0119 -0.5990 7 6 4.0366 -0.0919 -1.9560 8 1 3.4447 0.6365 -2.4903 9 6 4.6434 -1.1332 -2.6447 10 7 4.4978 -1.2326 -3.9490 11 14 5.6666 -2.3933 -1.7204 12 1 7.0790 -1.9381 -1.6630 13 1 5.1385 -2.5437 -0.3406 14 1 5.5958 -3.6998 -2.4227 15 6 4.2011 2.4580 -0.4982 16 6 5.7200 2.4857 -0.3088 17 8 6.0270 2.3873 1.0834 18 6 5.5697 1.1809 1.6978 19 6 4.0447 1.1008 1.5890 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5138 -0.8899 23 1 1.9500 -0.8400 -0.0004 24 1 4.6581 -0.6812 -0.1092 25 1 4.9222 -1.9600 -4.4303 26 1 3.9662 2.4885 -1.5621 27 1 3.7562 3.3201 -0.0011 28 1 6.1186 3.4202 -0.7037 29 1 6.1681 1.6461 -0.8401 30 1 5.8599 1.1754 2.7484 31 1 6.0157 0.3240 1.1930 32 1 3.5967 1.9353 2.1283 33 1 3.6978 0.1606 2.0179 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176186295.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:20 Heat of formation + Delta-G solvation = -93.007085 kcal Electronic energy + Delta-G solvation = -17192.656909 eV Core-core repulsion = 14445.795607 eV Total energy + Delta-G solvation = -2746.861302 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.48716 -39.46121 -36.71052 -35.42357 -34.17541 -32.10253 -31.59110 -28.36612 -26.15803 -25.06029 -24.40229 -21.93535 -20.24748 -19.86510 -18.50624 -17.35611 -16.91220 -16.54122 -16.38468 -16.11310 -15.75678 -15.23211 -14.97168 -14.47342 -14.25356 -13.92552 -13.58459 -13.22272 -13.07228 -12.97777 -12.81616 -12.26363 -12.19593 -11.82372 -11.74749 -11.51297 -11.25065 -10.83006 -10.40796 -9.98409 -9.35870 -8.00976 -5.41054 1.39590 1.45613 1.51917 1.71202 2.45989 2.49229 3.00256 3.30452 3.38203 3.80182 3.87942 3.99371 4.11961 4.37940 4.43332 4.56795 4.61584 4.68208 4.72217 4.83542 4.89158 4.93142 5.07404 5.15764 5.22777 5.61634 5.75726 6.17521 6.28955 6.65383 7.02545 7.35588 7.71743 7.96063 9.19691 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.019265 B = 0.014287 C = 0.010209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.045878 B = 1959.307963 C = 2742.103238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.716 5.716 3 C 0.508 3.492 4 O -0.598 6.598 5 C 0.185 3.815 6 N -0.727 5.727 7 C -0.223 4.223 8 H 0.045 0.955 9 C -0.048 4.048 10 N -0.979 5.979 11 Si 0.949 3.051 12 H -0.283 1.283 13 H -0.236 1.236 14 H -0.302 1.302 15 C -0.135 4.135 16 C 0.077 3.923 17 O -0.393 6.393 18 C 0.063 3.937 19 C -0.143 4.143 20 H 0.104 0.896 21 H 0.061 0.939 22 H 0.035 0.965 23 H 0.412 0.588 24 H 0.375 0.625 25 H 0.258 0.742 26 H 0.046 0.954 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.047 0.953 30 H 0.127 0.873 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.512 -0.106 13.782 13.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.366 5.366 3 C 0.294 3.706 4 O -0.479 6.479 5 C 0.091 3.909 6 N -0.373 5.373 7 C -0.354 4.354 8 H 0.063 0.937 9 C -0.241 4.241 10 N -0.628 5.628 11 Si 0.776 3.224 12 H -0.209 1.209 13 H -0.159 1.159 14 H -0.229 1.229 15 C -0.175 4.175 16 C 0.000 4.000 17 O -0.312 6.312 18 C -0.014 4.014 19 C -0.182 4.182 20 H 0.122 0.878 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.248 0.752 24 H 0.211 0.789 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.065 0.935 30 H 0.145 0.855 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.936 0.796 13.626 13.681 hybrid contribution 0.329 -1.329 -0.749 1.561 sum -0.607 -0.533 12.877 12.902 Atomic orbital electron populations 1.21624 0.79442 1.03700 1.01038 1.45708 1.07874 1.09222 1.73830 1.21917 0.91856 0.83181 0.73694 1.90569 1.71613 1.33296 1.52394 1.19901 0.87792 0.88910 0.94248 1.42685 1.67999 1.22449 1.04187 1.18606 1.25043 1.08758 0.82965 0.93685 1.25429 1.01554 1.01257 0.95835 1.69895 1.49935 1.34678 1.08315 0.85529 0.79155 0.78159 0.79575 1.20909 1.15937 1.22933 1.22184 0.97427 0.97215 1.00692 1.22393 0.93358 1.02204 0.82000 1.87834 1.79245 1.40981 1.23110 1.22710 0.91850 0.87113 0.99723 1.22350 0.98734 1.04737 0.92350 0.87750 0.92019 0.94601 0.75212 0.78886 0.93325 0.93472 0.91253 0.88052 0.93475 0.85541 0.93151 0.89619 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.40 10.71 127.77 1.37 3.77 16 2 N -0.72 -24.36 5.63 -484.52 -2.73 -27.09 16 3 C 0.51 20.23 6.24 87.66 0.55 20.78 16 4 O -0.60 -27.46 16.05 -3.02 -0.05 -27.51 16 5 C 0.19 6.79 0.69 2.98 0.00 6.80 16 6 N -0.73 -29.22 3.19 -306.21 -0.98 -30.20 16 7 C -0.22 -11.46 9.22 84.03 0.77 -10.69 16 8 H 0.05 2.73 7.39 -2.91 -0.02 2.71 16 9 C -0.05 -2.61 5.50 84.86 0.47 -2.15 16 10 N -0.98 -59.49 13.97 21.65 0.30 -59.19 16 11 Si 0.95 40.63 27.79 68.60 1.91 42.53 16 12 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 13 H -0.24 -8.37 6.45 99.48 0.64 -7.73 16 14 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 15 C -0.14 -5.27 4.34 30.69 0.13 -5.14 16 16 C 0.08 2.68 6.68 72.01 0.48 3.16 16 17 O -0.39 -12.41 10.77 -148.98 -1.60 -14.02 16 18 C 0.06 1.63 6.67 72.01 0.48 2.11 16 19 C -0.14 -3.96 4.93 30.68 0.15 -3.80 16 20 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 21 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 22 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.41 13.22 8.13 -92.71 -0.75 12.47 16 24 H 0.38 13.82 4.72 -92.71 -0.44 13.38 16 25 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 26 H 0.05 2.14 7.06 -2.39 -0.02 2.12 16 27 H 0.07 2.67 7.78 -2.39 -0.02 2.65 16 28 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.05 1.82 7.75 -2.39 -0.02 1.80 16 30 H 0.13 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 1.36 7.19 -2.39 -0.02 1.34 16 32 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -68.18 268.35 1.12 -67.06 By element: Atomic # 1 Polarization: 33.70 SS G_CDS: -0.14 Total: 33.56 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 4.40 Total: 14.84 kcal Atomic # 7 Polarization: -113.07 SS G_CDS: -3.40 Total: -116.47 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -1.65 Total: -41.52 kcal Atomic # 14 Polarization: 40.63 SS G_CDS: 1.91 Total: 42.53 kcal Total: -68.18 1.12 -67.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176186295.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.944 kcal (2) G-P(sol) polarization free energy of solvation -68.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds