Wall clock time and date at job start Mon Mar 30 2020 02:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 113.99913 * 2 1 4 4 H 1.08993 * 109.47448 * 330.00187 * 3 2 1 5 5 C 1.52998 * 109.46844 * 90.00159 * 3 2 1 6 6 C 1.50703 * 109.47268 * 209.99798 * 3 2 1 7 7 O 1.21282 * 119.99705 * 355.00731 * 6 3 2 8 8 N 1.34775 * 120.00337 * 175.00221 * 6 3 2 9 9 C 1.46494 * 119.99896 * 180.02562 * 8 6 3 10 10 C 1.53498 * 114.20393 * 155.00255 * 9 8 6 11 11 N 1.47065 * 87.98675 * 87.71349 * 10 9 8 12 12 C 1.36935 * 136.05778 * 207.07950 * 11 10 9 13 13 H 1.07997 * 119.99961 * 6.77313 * 12 11 10 14 14 C 1.38812 * 119.99962 * 186.76980 * 12 11 10 15 15 N 1.31618 * 119.99992 * 172.26235 * 14 12 11 16 16 Si 1.86799 * 119.99953 * 352.26705 * 14 12 11 17 17 H 1.48501 * 109.46888 * 175.35669 * 16 14 12 18 18 H 1.48499 * 109.47213 * 295.35451 * 16 14 12 19 19 H 1.48498 * 109.47136 * 55.35818 * 16 14 12 20 20 C 1.47070 * 87.88470 * 27.34556 * 11 10 9 21 21 H 1.08994 * 109.46946 * 299.99957 * 1 2 3 22 22 H 1.09004 * 109.46992 * 59.99932 * 1 2 3 23 23 H 1.08999 * 109.46996 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47190 * 179.97438 * 5 3 2 25 25 H 1.09004 * 109.47495 * 299.99924 * 5 3 2 26 26 H 1.09002 * 109.47260 * 59.99698 * 5 3 2 27 27 H 0.97001 * 119.99630 * 0.02562 * 8 6 3 28 28 H 1.08994 * 113.28499 * 21.93278 * 9 8 6 29 29 H 1.09003 * 113.46903 * 332.93254 * 10 9 8 30 30 H 1.09000 * 113.46767 * 202.49268 * 10 9 8 31 31 H 0.96996 * 120.00063 * 4.88099 * 15 14 12 32 32 H 1.08996 * 113.47141 * 87.43428 * 20 11 10 33 33 H 1.09002 * 113.46180 * 217.88172 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2177 1.7713 1.4425 6 6 3.3387 1.2639 -0.7104 7 8 3.7897 0.2045 -1.0914 8 7 4.0255 2.4040 -0.9223 9 6 5.3166 2.3636 -1.6134 10 6 5.6967 3.6754 -2.3140 11 7 6.3032 4.1151 -1.0484 12 6 6.5543 5.3160 -0.4402 13 1 6.1792 6.2305 -0.8754 14 6 7.2908 5.3580 0.7356 15 7 7.6624 6.5161 1.2385 16 14 7.7546 3.7706 1.6043 17 1 8.6285 4.0785 2.7648 18 1 6.5240 3.0881 2.0786 19 1 8.4801 2.8834 0.6600 20 6 6.5274 2.6977 -0.7264 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 2.6614 2.7669 1.4426 25 1 1.2568 1.8013 1.9564 26 1 2.8829 1.0773 1.9563 27 1 3.6649 3.2512 -0.6173 28 1 5.4482 1.4737 -2.2289 29 1 4.8357 4.2729 -2.6134 30 1 6.4197 3.5438 -3.1190 31 1 7.3624 7.3420 0.8275 32 1 7.4692 2.3084 -1.1130 33 1 6.3739 2.4624 0.3268 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692174245.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:06 Heat of formation + Delta-G solvation = -42.325833 kcal Electronic energy + Delta-G solvation = -16292.248507 eV Core-core repulsion = 13547.584909 eV Total energy + Delta-G solvation = -2744.663598 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.37048 -39.88492 -38.36038 -35.18077 -34.23679 -32.32245 -29.69633 -27.68261 -27.02966 -25.61791 -24.06998 -21.71641 -21.17161 -19.53418 -18.59504 -17.98453 -17.21356 -16.73754 -16.53016 -15.92805 -15.68572 -15.35215 -15.22131 -14.85475 -14.26384 -13.76394 -13.51580 -13.37086 -13.26967 -12.79754 -12.76027 -12.47543 -12.11654 -12.04275 -11.36257 -11.26310 -11.08552 -10.98966 -10.54601 -10.00883 -9.21064 -8.63115 -5.45754 1.39198 1.44677 1.49248 1.65138 1.84329 2.51155 2.93620 3.00588 3.24686 3.54798 3.65402 3.90868 4.01907 4.28896 4.34679 4.48044 4.56845 4.62638 4.64179 4.66922 4.75391 4.78531 4.87364 4.90869 5.16354 5.18263 5.53451 5.96062 6.07337 6.53531 6.70822 7.16329 7.33214 8.27092 8.92606 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.034986 B = 0.007374 C = 0.006909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.124767 B = 3796.289304 C = 4051.437197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.394 6.394 3 C 0.076 3.924 4 H 0.119 0.881 5 C -0.169 4.169 6 C 0.512 3.488 7 O -0.569 6.569 8 N -0.690 5.690 9 C 0.119 3.881 10 C 0.119 3.881 11 N -0.654 5.654 12 C -0.284 4.284 13 H 0.059 0.941 14 C -0.079 4.079 15 N -0.972 5.972 16 Si 1.105 2.895 17 H -0.308 1.308 18 H -0.278 1.278 19 H -0.267 1.267 20 C 0.074 3.926 21 H 0.061 0.939 22 H 0.055 0.945 23 H 0.098 0.902 24 H 0.077 0.923 25 H 0.095 0.905 26 H 0.051 0.949 27 H 0.413 0.587 28 H 0.118 0.882 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.248 0.752 32 H 0.065 0.935 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.113 -10.678 -3.553 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.312 6.312 3 C 0.015 3.985 4 H 0.137 0.863 5 C -0.226 4.226 6 C 0.299 3.701 7 O -0.448 6.448 8 N -0.342 5.342 9 C 0.012 3.988 10 C -0.006 4.006 11 N -0.383 5.383 12 C -0.412 4.412 13 H 0.076 0.924 14 C -0.272 4.272 15 N -0.618 5.618 16 Si 0.933 3.067 17 H -0.236 1.236 18 H -0.205 1.205 19 H -0.193 1.193 20 C -0.052 4.052 21 H 0.080 0.920 22 H 0.074 0.926 23 H 0.116 0.884 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.070 0.930 27 H 0.249 0.751 28 H 0.136 0.864 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.832 -11.995 -2.468 18.474 hybrid contribution -0.717 1.812 -1.065 2.221 sum -14.548 -10.183 -3.533 18.106 Atomic orbital electron populations 1.23117 0.78523 1.04291 1.01525 1.88007 1.22065 1.26013 1.95150 1.21961 0.92062 0.87207 0.97281 0.86311 1.22238 1.04347 1.01902 0.94158 1.21056 0.87106 0.83304 0.78639 1.90665 1.70873 1.31069 1.52149 1.45443 1.20132 1.09893 1.58743 1.22230 0.82763 0.99511 0.94302 1.22887 0.96683 0.91487 0.89584 1.46162 1.72458 1.00559 1.19139 1.19989 1.31323 0.83881 1.05979 0.92360 1.26764 0.97453 1.05607 0.97343 1.71015 1.46529 0.97485 1.46791 0.83247 0.76355 0.71875 0.75174 1.23607 1.20536 1.19264 1.23494 0.97813 0.84932 0.98971 0.92019 0.92590 0.88373 0.90436 0.88582 0.92972 0.75111 0.86409 0.91826 0.90974 0.94224 0.91750 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.39 -10.07 9.89 -129.99 -1.29 -11.36 16 3 C 0.08 1.75 3.13 29.85 0.09 1.84 16 4 H 0.12 1.92 7.79 -2.39 -0.02 1.90 16 5 C -0.17 -3.54 9.48 71.98 0.68 -2.86 16 6 C 0.51 15.87 7.18 87.66 0.63 16.50 16 7 O -0.57 -22.26 16.10 15.95 0.26 -22.01 16 8 N -0.69 -20.84 5.37 -441.52 -2.37 -23.21 16 9 C 0.12 3.92 4.61 45.55 0.21 4.13 16 10 C 0.12 4.11 8.44 83.18 0.70 4.81 16 11 N -0.65 -29.75 3.70 -737.96 -2.73 -32.47 16 12 C -0.28 -15.80 11.08 84.03 0.93 -14.87 16 13 H 0.06 3.46 8.05 -2.91 -0.02 3.44 16 14 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 15 N -0.97 -61.93 13.70 21.65 0.30 -61.63 16 16 Si 1.11 54.20 25.13 68.60 1.72 55.93 16 17 H -0.31 -15.58 7.11 99.48 0.71 -14.88 16 18 H -0.28 -12.73 6.65 99.48 0.66 -12.07 16 19 H -0.27 -12.06 6.13 99.48 0.61 -11.45 16 20 C 0.07 2.98 5.54 83.27 0.46 3.44 16 21 H 0.06 0.70 7.87 -2.39 -0.02 0.68 16 22 H 0.06 0.69 8.09 -2.39 -0.02 0.67 16 23 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.08 1.62 7.92 -2.39 -0.02 1.61 16 25 H 0.10 1.47 7.87 -2.38 -0.02 1.45 16 26 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.41 11.46 8.54 -92.71 -0.79 10.67 16 28 H 0.12 3.67 7.45 -2.39 -0.02 3.65 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.25 15.77 8.73 -92.71 -0.81 14.96 16 32 H 0.06 2.50 7.73 -2.39 -0.02 2.48 16 33 H 0.04 1.82 4.65 -2.39 -0.01 1.81 16 Total: -1.00 -74.10 276.80 1.43 -72.67 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.13 Total: 11.71 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.40 Total: 10.37 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.80 Total: -117.32 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -1.03 Total: -33.36 kcal Atomic # 14 Polarization: 54.20 SS G_CDS: 1.72 Total: 55.93 kcal Total: -74.10 1.43 -72.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692174245.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.342 kcal (2) G-P(sol) polarization free energy of solvation -74.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds