Wall clock time and date at job start Mon Mar 30 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00265 * 2 1 4 4 C 1.50700 * 109.47143 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27800 * 4 3 2 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 3 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 H 1.08996 * 112.96703 * 55.33372 * 8 7 6 10 10 C 1.53944 * 113.77251 * 187.01187 * 8 7 6 11 11 C 1.53945 * 86.29519 * 137.90543 * 10 8 7 12 12 N 1.47583 * 113.77308 * 283.65417 * 8 7 6 13 13 C 1.36943 * 134.48795 * 41.06427 * 12 8 7 14 14 H 1.08002 * 120.00255 * 359.97438 * 13 12 8 15 15 C 1.38813 * 119.99748 * 180.02562 * 13 12 8 16 16 N 1.31621 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47150 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47329 * 119.99635 * 17 15 13 20 20 H 1.48504 * 109.47300 * 239.99607 * 17 15 13 21 21 H 1.08994 * 109.47420 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47162 * 300.00266 * 1 2 3 23 23 H 1.09009 * 109.46711 * 60.00044 * 1 2 3 24 24 H 1.09009 * 109.46798 * 59.99573 * 3 2 1 25 25 H 1.08998 * 109.46844 * 300.00077 * 3 2 1 26 26 H 0.97000 * 119.99894 * 359.71837 * 6 4 3 27 27 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 28 28 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 29 29 H 1.09003 * 113.74305 * 252.25316 * 10 8 7 30 30 H 1.09004 * 113.74023 * 23.56350 * 10 8 7 31 31 H 1.09007 * 113.76668 * 90.69134 * 11 10 8 32 32 H 1.08995 * 113.77329 * 221.97874 * 11 10 8 33 33 H 0.97000 * 119.99564 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2765 2.2967 0.0064 7 6 5.7369 2.1809 0.0131 8 6 6.3592 3.5786 0.0181 9 1 6.0069 4.1981 0.8428 10 6 7.8898 3.5769 -0.1467 11 6 7.6883 4.7682 -1.1008 12 7 6.3161 4.2537 -1.2935 13 6 5.3808 4.3593 -2.2882 14 1 4.4229 3.8717 -2.1828 15 6 5.6644 5.0923 -3.4325 16 7 6.8320 5.6861 -3.5612 17 14 4.3884 5.2369 -4.7890 18 1 3.1681 4.4838 -4.4031 19 1 4.0439 6.6668 -4.9942 20 1 4.9389 4.6748 -6.0485 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.8593 3.1724 0.0060 27 1 6.0543 1.6384 0.9035 28 1 6.0627 1.6417 -0.8764 29 1 8.4297 3.8316 0.7654 30 1 8.2775 2.6835 -0.6361 31 1 7.7262 5.7387 -0.6059 32 1 8.3075 4.7232 -1.9966 33 1 7.0301 6.1979 -4.3610 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001723391072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:42 Heat of formation + Delta-G solvation = -26.310113 kcal Electronic energy + Delta-G solvation = -16009.054464 eV Core-core repulsion = 13265.085360 eV Total energy + Delta-G solvation = -2743.969104 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.49788 -38.06106 -37.20751 -34.02166 -32.21187 -29.53973 -27.95546 -27.28212 -25.55463 -23.38984 -22.10865 -20.32444 -19.12900 -17.34297 -16.70065 -16.44531 -16.23497 -15.19055 -15.13299 -14.59506 -14.34084 -13.84992 -13.48658 -13.10582 -12.77344 -12.34275 -11.79321 -11.53569 -11.44192 -11.12644 -11.03113 -10.76669 -10.55120 -10.02577 -9.85151 -9.76661 -9.62929 -9.30268 -8.82853 -8.58831 -6.91654 -5.79079 -3.11460 2.91559 3.08354 3.35521 3.40025 3.43454 4.17868 4.41106 4.90691 5.08154 5.12562 5.18972 5.23299 5.31391 5.38225 5.52535 5.60483 5.70322 5.90330 6.08339 6.30669 6.39333 6.60658 6.70482 6.82836 6.97308 7.22554 7.39308 7.56824 7.87538 7.95498 8.55700 9.01290 9.68519 10.57168 11.37880 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.008055 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.241369 B = 3475.356659 C = 4561.654338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.042 3.958 4 C 0.510 3.490 5 O -0.532 6.532 6 N -0.713 5.713 7 C 0.125 3.875 8 C 0.126 3.874 9 H 0.050 0.950 10 C -0.156 4.156 11 C 0.159 3.841 12 N -0.603 5.603 13 C -0.219 4.219 14 H 0.079 0.921 15 C -0.008 4.008 16 N -0.919 5.919 17 Si 0.908 3.092 18 H -0.281 1.281 19 H -0.291 1.291 20 H -0.290 1.290 21 H 0.089 0.911 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.403 0.597 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.648 -4.474 8.447 12.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.038 4.038 4 C 0.295 3.705 5 O -0.409 6.409 6 N -0.365 5.365 7 C 0.001 3.999 8 C 0.018 3.982 9 H 0.067 0.933 10 C -0.195 4.195 11 C 0.033 3.967 12 N -0.330 5.330 13 C -0.347 4.347 14 H 0.097 0.903 15 C -0.204 4.204 16 N -0.566 5.566 17 Si 0.738 3.262 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.217 1.217 21 H 0.107 0.893 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.237 0.763 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.045 0.955 32 H 0.091 0.909 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.277 -5.331 8.124 12.140 hybrid contribution -1.215 1.015 -0.827 1.786 sum -8.492 -4.317 7.297 12.000 Atomic orbital electron populations 1.22817 0.80775 1.03034 1.00066 1.88008 1.19470 1.25589 1.95420 1.22278 0.92328 0.86601 1.02577 1.20147 0.88408 0.84856 0.77118 1.90693 1.74687 1.26602 1.48904 1.45847 1.07728 1.08434 1.74468 1.21762 0.78038 0.98655 1.01461 1.22509 0.94166 0.91106 0.90401 0.93260 1.23764 0.94674 1.01384 0.99639 1.22235 0.86562 0.92108 0.95747 1.46114 1.14781 1.58499 1.13598 1.18982 0.94753 1.26666 0.94277 0.90322 1.24767 0.97290 1.00102 0.98276 1.69828 1.21236 1.37442 1.28099 0.86118 0.80477 0.77259 0.82297 1.20587 1.21806 1.21721 0.89301 0.93971 0.93827 0.90483 0.90126 0.76274 0.92122 0.90980 0.92734 0.90461 0.95520 0.90855 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.37 -5.50 10.24 -55.14 -0.56 -6.06 16 3 C 0.04 0.57 6.42 36.01 0.23 0.80 16 4 C 0.51 8.95 7.91 -10.98 -0.09 8.86 16 5 O -0.53 -11.55 16.50 -14.36 -0.24 -11.79 16 6 N -0.71 -12.01 5.35 -60.30 -0.32 -12.33 16 7 C 0.13 2.27 5.54 -4.04 -0.02 2.25 16 8 C 0.13 2.38 4.33 -66.86 -0.29 2.09 16 9 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 10 C -0.16 -2.82 7.86 -25.80 -0.20 -3.02 16 11 C 0.16 3.60 7.52 -2.85 -0.02 3.58 16 12 N -0.60 -14.54 3.59 -169.75 -0.61 -15.15 16 13 C -0.22 -5.81 10.51 -15.06 -0.16 -5.97 16 14 H 0.08 1.99 7.49 -52.49 -0.39 1.59 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 16 N -0.92 -26.80 11.40 55.49 0.63 -26.16 16 17 Si 0.91 21.81 29.55 -169.99 -5.02 16.79 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 23 H 0.04 0.38 8.14 -51.92 -0.42 -0.04 16 24 H 0.08 0.80 8.14 -51.92 -0.42 0.38 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.40 6.21 8.35 -40.82 -0.34 5.87 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 1.86 7.18 -51.93 -0.37 1.49 16 33 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 285.38 15.07 4.30 4.30 Total: -1.00 -33.26 285.38 -6.25 -39.51 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -4.89 Total: 1.20 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: 0.47 Total: 9.70 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.30 Total: -53.64 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.80 Total: -17.85 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.26 -6.25 -39.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723391072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.196 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds