Wall clock time and date at job start Mon Mar 30 2020 03:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00265 * 2 1 4 4 C 1.50700 * 109.47143 * 179.97438 * 3 2 1 5 5 O 1.21283 * 119.99803 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99675 * 180.27800 * 4 3 2 7 7 C 1.46497 * 119.99525 * 179.72583 * 6 4 3 8 8 C 1.52999 * 109.46992 * 179.97438 * 7 6 4 9 9 H 1.08996 * 112.96703 * 55.33372 * 8 7 6 10 10 C 1.53944 * 113.77251 * 187.01187 * 8 7 6 11 11 C 1.53945 * 86.29519 * 137.90543 * 10 8 7 12 12 N 1.47583 * 113.77308 * 283.65417 * 8 7 6 13 13 C 1.36943 * 134.48795 * 41.06427 * 12 8 7 14 14 H 1.08002 * 120.00255 * 359.97438 * 13 12 8 15 15 C 1.38813 * 119.99748 * 180.02562 * 13 12 8 16 16 N 1.31621 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99929 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47150 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47329 * 119.99635 * 17 15 13 20 20 H 1.48504 * 109.47300 * 239.99607 * 17 15 13 21 21 H 1.08994 * 109.47420 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47162 * 300.00266 * 1 2 3 23 23 H 1.09009 * 109.46711 * 60.00044 * 1 2 3 24 24 H 1.09009 * 109.46798 * 59.99573 * 3 2 1 25 25 H 1.08998 * 109.46844 * 300.00077 * 3 2 1 26 26 H 0.97000 * 119.99894 * 359.71837 * 6 4 3 27 27 H 1.08995 * 109.47421 * 299.99467 * 7 6 4 28 28 H 1.09001 * 109.47621 * 60.00103 * 7 6 4 29 29 H 1.09003 * 113.74305 * 252.25316 * 10 8 7 30 30 H 1.09004 * 113.74023 * 23.56350 * 10 8 7 31 31 H 1.09007 * 113.76668 * 90.69134 * 11 10 8 32 32 H 1.08995 * 113.77329 * 221.97874 * 11 10 8 33 33 H 0.97000 * 119.99564 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 8 4.0341 0.0914 0.0015 6 7 4.2765 2.2967 0.0064 7 6 5.7369 2.1809 0.0131 8 6 6.3592 3.5786 0.0181 9 1 6.0069 4.1981 0.8428 10 6 7.8898 3.5769 -0.1467 11 6 7.6883 4.7682 -1.1008 12 7 6.3161 4.2537 -1.2935 13 6 5.3808 4.3593 -2.2882 14 1 4.4229 3.8717 -2.1828 15 6 5.6644 5.0923 -3.4325 16 7 6.8320 5.6861 -3.5612 17 14 4.3884 5.2369 -4.7890 18 1 3.1681 4.4838 -4.4031 19 1 4.0439 6.6668 -4.9942 20 1 4.9389 4.6748 -6.0485 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5139 -0.8901 24 1 1.6885 1.8464 0.8900 25 1 1.6886 1.8463 -0.8900 26 1 3.8593 3.1724 0.0060 27 1 6.0543 1.6384 0.9035 28 1 6.0627 1.6417 -0.8764 29 1 8.4297 3.8316 0.7654 30 1 8.2775 2.6835 -0.6361 31 1 7.7262 5.7387 -0.6059 32 1 8.3075 4.7232 -1.9966 33 1 7.0301 6.1979 -4.3610 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723391072.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:42 Heat of formation + Delta-G solvation = -50.757420 kcal Electronic energy + Delta-G solvation = -16010.114579 eV Core-core repulsion = 13265.085360 eV Total energy + Delta-G solvation = -2745.029219 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.87184 -39.62180 -38.34436 -35.51143 -34.19393 -30.78588 -29.83548 -28.50926 -26.55664 -25.28247 -23.67202 -21.70878 -20.82356 -18.89116 -18.03980 -17.79328 -17.35804 -16.93025 -16.43044 -16.02148 -15.71333 -15.53529 -14.98681 -14.68494 -13.99937 -13.68186 -13.33827 -13.06447 -12.96213 -12.67240 -12.56119 -12.36768 -12.25922 -11.83511 -11.50244 -11.35442 -10.84770 -10.78050 -10.76091 -10.03696 -8.87029 -7.85494 -5.16984 1.44308 1.46301 1.54479 1.58150 1.91631 2.48161 3.12263 3.36854 3.41248 3.77090 4.01116 4.14714 4.19184 4.26108 4.37264 4.52134 4.57426 4.64394 4.72944 4.85730 4.88928 5.07515 5.11697 5.35323 5.43500 5.62800 5.76468 5.98965 6.04667 6.57260 6.96539 7.23022 7.67057 8.61993 9.31910 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.022125 B = 0.008055 C = 0.006137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.241369 B = 3475.356659 C = 4561.654338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.047 3.953 4 C 0.504 3.496 5 O -0.581 6.581 6 N -0.707 5.707 7 C 0.133 3.867 8 C 0.134 3.866 9 H 0.076 0.924 10 C -0.132 4.132 11 C 0.149 3.851 12 N -0.631 5.631 13 C -0.211 4.211 14 H 0.089 0.911 15 C -0.074 4.074 16 N -0.956 5.956 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.294 1.294 20 H -0.302 1.302 21 H 0.097 0.903 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.114 0.886 25 H 0.097 0.903 26 H 0.412 0.588 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.024 0.976 32 H 0.037 0.963 33 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -4.681 9.983 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C -0.032 4.032 4 C 0.291 3.709 5 O -0.461 6.461 6 N -0.359 5.359 7 C 0.008 3.992 8 C 0.028 3.972 9 H 0.093 0.907 10 C -0.171 4.171 11 C 0.024 3.976 12 N -0.357 5.357 13 C -0.340 4.340 14 H 0.107 0.893 15 C -0.266 4.266 16 N -0.606 5.606 17 Si 0.796 3.204 18 H -0.186 1.186 19 H -0.221 1.221 20 H -0.230 1.230 21 H 0.116 0.884 22 H 0.081 0.919 23 H 0.073 0.927 24 H 0.132 0.868 25 H 0.115 0.885 26 H 0.248 0.752 27 H 0.098 0.902 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.055 0.945 33 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -9.024 -5.535 9.701 14.359 hybrid contribution -0.688 1.039 -1.228 1.749 sum -9.712 -4.497 8.473 13.650 Atomic orbital electron populations 1.23055 0.78270 1.04260 1.01622 1.87955 1.22229 1.26531 1.95783 1.22326 0.89037 0.86772 1.05049 1.20948 0.90311 0.83967 0.75644 1.90667 1.75934 1.28351 1.51168 1.45811 1.07226 1.08959 1.73951 1.21553 0.79059 0.97785 1.00834 1.22677 0.94864 0.91090 0.88574 0.90693 1.23568 0.94693 0.98915 0.99876 1.22207 0.85922 0.93931 0.95555 1.46470 1.14890 1.59048 1.15312 1.19396 0.95261 1.24721 0.94628 0.89297 1.25535 0.99096 1.01186 1.00791 1.70013 1.23114 1.39099 1.28363 0.85171 0.79035 0.76927 0.79234 1.18570 1.22146 1.22983 0.88422 0.91863 0.92716 0.86804 0.88477 0.75220 0.90193 0.94224 0.88644 0.90563 0.95807 0.94488 0.94671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -11.33 10.24 -129.94 -1.33 -12.66 16 3 C 0.05 1.15 6.42 71.24 0.46 1.60 16 4 C 0.50 16.84 7.91 87.66 0.69 17.53 16 5 O -0.58 -24.94 16.50 16.00 0.26 -24.68 16 6 N -0.71 -22.30 5.35 -463.07 -2.48 -24.77 16 7 C 0.13 4.57 5.54 86.38 0.48 5.05 16 8 C 0.13 4.75 4.33 45.09 0.20 4.95 16 9 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 10 C -0.13 -4.48 7.86 31.25 0.25 -4.24 16 11 C 0.15 6.76 7.52 86.44 0.65 7.41 16 12 N -0.63 -29.89 3.59 -690.95 -2.48 -32.36 16 13 C -0.21 -11.09 10.51 84.03 0.88 -10.20 16 14 H 0.09 4.35 7.49 -2.91 -0.02 4.33 16 15 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 16 N -0.96 -57.18 11.40 21.65 0.25 -56.93 16 17 Si 0.97 45.07 29.55 68.60 2.03 47.10 16 18 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 21 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 24 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 25 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 26 H 0.41 11.50 8.35 -92.71 -0.77 10.73 16 27 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.08 2.62 8.10 -2.39 -0.02 2.60 16 31 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.04 1.93 7.18 -2.39 -0.02 1.91 16 33 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -73.40 285.38 1.89 -71.51 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.32 Total: 12.69 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 5.32 Total: 20.12 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.71 Total: -114.07 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.07 Total: -37.34 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -73.40 1.89 -71.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723391072.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.753 kcal (2) G-P(sol) polarization free energy of solvation -73.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds