Wall clock time and date at job start Mon Mar 30 2020 03:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47266 * 60.00049 * 8 6 4 10 10 H 1.48504 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47383 * 299.99456 * 8 6 4 12 12 N 1.46904 * 109.46661 * 119.99547 * 2 1 3 13 13 C 1.46894 * 111.00006 * 274.99752 * 12 2 1 14 14 C 1.53005 * 109.47093 * 179.97438 * 13 12 2 15 15 H 1.08997 * 109.50813 * 305.09157 * 14 13 12 16 16 C 1.53099 * 109.50573 * 184.99916 * 14 13 12 17 17 N 1.47010 * 109.25691 * 183.21614 * 16 14 13 18 18 C 1.46904 * 111.00092 * 182.39571 * 17 16 14 19 19 C 1.47016 * 110.75088 * 58.61895 * 17 16 14 20 20 C 1.53099 * 109.26095 * 301.38416 * 19 17 16 21 21 O 1.43014 * 109.50146 * 65.21943 * 14 13 12 22 22 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 24 24 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.00902 * 110.99844 * 151.04691 * 12 2 1 27 27 H 1.08997 * 109.47383 * 300.00362 * 13 12 2 28 28 H 1.09003 * 109.46973 * 60.00294 * 13 12 2 29 29 H 1.09001 * 109.50820 * 303.15333 * 16 14 13 30 30 H 1.09001 * 109.50553 * 63.28799 * 16 14 13 31 31 H 1.08997 * 109.47046 * 60.00186 * 18 17 16 32 32 H 1.08997 * 109.46844 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.46687 * 299.99782 * 18 17 16 34 34 H 1.09001 * 109.50704 * 61.31949 * 19 17 16 35 35 H 1.09001 * 109.50938 * 181.44468 * 19 17 16 36 36 H 1.08991 * 109.50818 * 176.78269 * 20 19 17 37 37 H 1.09002 * 109.50326 * 296.91896 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.8387 -2.5128 -4.0135 10 1 1.8422 -0.4097 -5.2203 11 1 3.8181 -1.1118 -4.0019 12 7 2.0196 -0.6924 1.1996 13 6 2.0824 0.2227 2.3469 14 6 2.5949 -0.5330 3.5746 15 1 1.9702 -1.4089 3.7498 16 6 2.5429 0.3852 4.7986 17 7 3.1079 -0.3201 5.9581 18 6 3.0249 0.5072 7.1692 19 6 4.4949 -0.7296 5.6937 20 6 4.5274 -1.6366 4.4607 21 8 3.9459 -0.9458 3.3516 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 0.7173 1.1669 -3.4844 26 1 2.9173 -1.1205 1.0289 27 1 2.7588 1.0463 2.1182 28 1 1.0870 0.6165 2.5524 29 1 3.1237 1.2865 4.6024 30 1 1.5078 0.6564 5.0065 31 1 1.9813 0.7425 7.3778 32 1 3.4501 -0.0383 8.0117 33 1 3.5824 1.4314 7.0167 34 1 5.1068 0.1539 5.5119 35 1 4.8848 -1.2721 6.5550 36 1 5.5598 -1.8963 4.2271 37 1 3.9594 -2.5449 4.6620 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082403708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:52:07 Heat of formation + Delta-G solvation = -64.442958 kcal Electronic energy + Delta-G solvation = -16378.550510 eV Core-core repulsion = 13768.760936 eV Total energy + Delta-G solvation = -2609.789574 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.67234 -37.75417 -36.58283 -34.76010 -32.74928 -30.32241 -29.52274 -27.39319 -26.24117 -25.03365 -22.99454 -21.73805 -21.29379 -18.59124 -17.55859 -17.18675 -16.77700 -16.45133 -15.99645 -15.85901 -15.49895 -14.89287 -14.82014 -14.53518 -13.69978 -13.58476 -13.24816 -13.02210 -12.90349 -12.75560 -12.67428 -12.43047 -12.32557 -12.17823 -12.07778 -11.78589 -11.40801 -10.89467 -10.58657 -10.55898 -9.44316 -9.07599 -8.12769 -6.27028 1.42884 1.45293 1.52959 2.42364 2.75189 2.85337 3.15546 3.52493 3.96473 3.99932 4.06065 4.14721 4.25988 4.39645 4.51225 4.59239 4.63357 4.66839 4.68303 4.81503 4.87155 4.97140 4.98106 5.07013 5.08497 5.21720 5.47758 5.66765 5.86291 5.87255 5.96852 6.22780 6.26486 6.47224 6.76420 6.98730 7.43134 8.92940 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.050250 B = 0.005331 C = 0.004951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.078502 B = 5250.794623 C = 5653.798417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.033 1.033 4 C -0.540 4.540 5 H 0.057 0.943 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.272 1.272 12 N -0.683 5.683 13 C 0.072 3.928 14 C 0.106 3.894 15 H 0.067 0.933 16 C 0.031 3.969 17 N -0.553 5.553 18 C 0.025 3.975 19 C 0.019 3.981 20 C 0.057 3.943 21 O -0.404 6.404 22 H 0.028 0.972 23 H 0.025 0.975 24 H 0.057 0.943 25 H 0.263 0.737 26 H 0.335 0.665 27 H 0.013 0.987 28 H 0.083 0.917 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.026 0.974 34 H 0.036 0.964 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.385 -1.635 17.492 18.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.015 1.015 4 C -0.578 4.578 5 H 0.075 0.925 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.197 1.197 12 N -0.314 5.314 13 C -0.058 4.058 14 C 0.048 3.952 15 H 0.085 0.915 16 C -0.097 4.097 17 N -0.278 5.278 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.019 4.019 21 O -0.324 6.324 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.152 0.848 27 H 0.031 0.969 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.104 0.896 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.497 -2.143 17.444 18.141 hybrid contribution 1.275 1.107 -1.114 2.023 sum 5.773 -1.036 16.330 17.351 Atomic orbital electron populations 1.21534 0.97369 0.98973 0.99193 1.18954 0.92979 0.90666 0.86912 1.01518 1.21550 1.31872 1.12674 0.91728 0.92522 1.25740 0.95139 0.95670 1.02030 1.70014 1.37460 1.23969 1.24274 0.85520 0.78675 0.78689 0.78174 1.19557 1.20698 1.19700 1.60659 1.32468 1.32858 1.05387 1.21912 0.99598 0.93614 0.90683 1.22083 0.83318 0.96780 0.92993 0.91538 1.22675 1.01555 0.95081 0.90431 1.62227 1.19358 1.42258 1.03953 1.22452 1.02821 0.95392 0.91621 1.22850 0.88850 0.99312 0.99835 1.22843 0.99687 0.94262 0.85127 1.87989 1.27669 1.76355 1.40375 0.95243 0.95613 0.92403 0.92773 0.84806 0.96912 0.89911 0.94638 0.88475 0.90486 0.89617 0.95516 0.94545 0.87302 0.86855 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 9.19 71.98 0.66 -5.11 16 2 C 0.21 11.42 2.60 44.17 0.11 11.54 16 3 H -0.03 -1.93 7.80 -2.39 -0.02 -1.95 16 4 C -0.54 -30.93 8.59 25.60 0.22 -30.71 16 5 H 0.06 3.20 7.62 -2.91 -0.02 3.18 16 6 C 0.01 0.76 5.31 84.65 0.45 1.21 16 7 N -0.92 -53.98 11.33 21.45 0.24 -53.74 16 8 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.68 -31.20 6.30 -495.43 -3.12 -34.32 16 13 C 0.07 2.75 5.19 86.31 0.45 3.19 16 14 C 0.11 3.37 3.04 30.63 0.09 3.46 16 15 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 16 C 0.03 0.80 4.95 86.32 0.43 1.23 16 17 N -0.55 -12.19 4.99 -921.42 -4.59 -16.79 16 18 C 0.02 0.40 9.60 127.69 1.23 1.63 16 19 C 0.02 0.39 5.66 86.31 0.49 0.88 16 20 C 0.06 1.35 7.01 72.02 0.50 1.85 16 21 O -0.40 -13.20 10.00 -148.98 -1.49 -14.69 16 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.02 1.15 7.45 -2.39 -0.02 1.14 16 24 H 0.06 3.23 6.08 -2.38 -0.01 3.22 16 25 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.33 15.63 7.79 -89.69 -0.70 14.93 16 27 H 0.01 0.51 8.05 -2.39 -0.02 0.50 16 28 H 0.08 3.00 7.44 -2.39 -0.02 2.99 16 29 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -63.65 294.72 -1.98 -65.62 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.33 Total: 18.26 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 4.63 Total: -10.83 kcal Atomic # 7 Polarization: -97.38 SS G_CDS: -7.47 Total: -104.85 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -1.49 Total: -14.69 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -63.65 -1.98 -65.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082403708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.181 kcal (2) G-P(sol) polarization free energy of solvation -63.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds