Wall clock time and date at job start Mon Mar 30 2020 03:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86803 * 120.00267 * 2 1 4 4 H 1.48494 * 109.47290 * 269.99728 * 3 2 1 5 5 H 1.48495 * 109.46943 * 30.00160 * 3 2 1 6 6 H 1.48503 * 109.46896 * 149.99780 * 3 2 1 7 7 C 1.37881 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00037 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00002 * 180.02562 * 7 2 1 10 10 N 1.46501 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.39841 * 119.99767 * 179.97438 * 10 9 7 12 12 C 1.38817 * 120.07248 * 0.02562 * 11 10 9 13 13 C 1.38264 * 119.93718 * 179.97438 * 12 11 10 14 14 Cl 1.73597 * 119.95672 * 180.02562 * 13 12 11 15 15 C 1.38386 * 120.08133 * 359.72378 * 13 12 11 16 16 C 1.38275 * 120.15038 * 0.55239 * 15 13 12 17 17 C 1.38282 * 120.06020 * 359.44621 * 16 15 13 18 18 F 1.35098 * 120.04037 * 180.25070 * 17 16 15 19 19 H 0.97006 * 120.00061 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.47074 * 60.00150 * 9 7 2 21 21 H 1.09000 * 109.46796 * 299.99992 * 9 7 2 22 22 H 0.97003 * 120.00023 * 0.02562 * 10 9 7 23 23 H 1.07999 * 120.03597 * 359.95644 * 12 11 10 24 24 H 1.08000 * 119.92121 * 180.28169 * 15 13 12 25 25 H 1.08002 * 119.97295 * 179.72745 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3746 -2.8310 -0.0001 12 6 6.2780 -1.7770 0.0004 13 6 7.6368 -2.0329 0.0009 14 17 8.7670 -0.7153 0.0023 15 6 8.0968 -3.3381 0.0066 16 6 7.2000 -4.3906 0.0003 17 6 5.8398 -4.1416 -0.0002 18 9 4.9640 -5.1703 -0.0012 19 1 -0.4850 0.8401 0.0004 20 1 3.8745 -0.6809 0.8905 21 1 3.8751 -0.6797 -0.8895 22 1 3.3693 -3.3126 -0.0009 23 1 5.9200 -0.7581 0.0002 24 1 9.1587 -3.5350 0.0115 25 1 7.5622 -5.4080 0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035083598.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:11 Heat of formation + Delta-G solvation = -50.099715 kcal Electronic energy + Delta-G solvation = -13168.181314 eV Core-core repulsion = 10506.877718 eV Total energy + Delta-G solvation = -2661.303596 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.79007 -40.27018 -37.66114 -36.68845 -34.67381 -31.42477 -31.23054 -28.54862 -24.91768 -23.35032 -22.57289 -19.72992 -18.44526 -17.93219 -17.57244 -16.66635 -16.48775 -15.88660 -15.37233 -15.16864 -14.89955 -14.44833 -14.33655 -14.11166 -13.32590 -13.01798 -12.88950 -12.34377 -12.28591 -11.91512 -11.87029 -11.67170 -11.15310 -10.82936 -9.72478 -8.42024 -8.40836 -6.50658 0.03232 0.40543 1.10373 1.34662 1.35516 1.46333 2.26866 2.53454 2.55721 2.93884 3.28236 3.76577 4.15193 4.21168 4.45154 4.67925 4.68646 4.99812 5.01953 5.17595 5.22757 5.27210 5.64624 5.91061 6.37145 6.50257 6.78442 7.15794 8.74386 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.025649 B = 0.008254 C = 0.006266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.394484 B = 3391.442304 C = 4467.691596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.020 3.980 3 Si 0.946 3.054 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.244 1.244 7 C -0.555 4.555 8 H 0.042 0.958 9 C 0.237 3.763 10 N -0.727 5.727 11 C 0.191 3.809 12 C -0.191 4.191 13 C 0.007 3.993 14 Cl -0.062 7.062 15 C -0.146 4.146 16 C -0.077 4.077 17 C -0.007 4.007 18 F -0.150 7.150 19 H 0.273 0.727 20 H 0.023 0.977 21 H 0.022 0.978 22 H 0.400 0.600 23 H 0.130 0.870 24 H 0.169 0.831 25 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.645 -4.174 0.022 19.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.179 4.179 3 Si 0.768 3.232 4 H -0.186 1.186 5 H -0.203 1.203 6 H -0.167 1.167 7 C -0.593 4.593 8 H 0.060 0.940 9 C 0.113 3.887 10 N -0.352 5.352 11 C 0.083 3.917 12 C -0.215 4.215 13 C -0.020 4.020 14 Cl -0.033 7.033 15 C -0.167 4.167 16 C -0.097 4.097 17 C -0.031 4.031 18 F -0.129 7.129 19 H 0.082 0.918 20 H 0.041 0.959 21 H 0.039 0.961 22 H 0.235 0.765 23 H 0.148 0.852 24 H 0.187 0.813 25 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 18.445 -3.757 0.025 18.824 hybrid contribution -0.945 0.414 -0.019 1.032 sum 17.500 -3.343 0.006 17.816 Atomic orbital electron populations 1.70015 1.08216 1.28796 1.50551 1.25774 0.95641 1.03272 0.93242 0.85731 0.79668 0.78070 0.79701 1.18633 1.20255 1.16715 1.21290 0.90655 0.94139 1.53172 0.93977 1.19245 0.93190 0.80296 0.95948 1.44982 1.02385 1.08995 1.78805 1.18090 0.85376 0.92553 0.95693 1.20407 0.91296 0.98583 1.11209 1.20719 0.89223 0.89947 1.02152 1.98359 1.60255 1.47909 1.96759 1.20887 1.01611 0.88559 1.05668 1.21136 0.88772 1.01932 0.97817 1.17492 0.88616 0.81860 1.15107 1.91419 1.69256 1.57216 1.95001 0.91835 0.95911 0.96051 0.76538 0.85211 0.81342 0.80876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.66 13.96 21.45 0.30 -56.36 15 2 C 0.02 1.15 5.47 84.66 0.46 1.61 15 3 Si 0.95 41.89 27.47 68.60 1.88 43.78 15 4 H -0.26 -11.11 7.11 99.48 0.71 -10.40 15 5 H -0.28 -12.01 7.11 99.48 0.71 -11.31 15 6 H -0.24 -9.96 6.54 99.48 0.65 -9.31 15 7 C -0.55 -31.04 9.83 25.60 0.25 -30.79 15 8 H 0.04 2.59 7.84 -2.91 -0.02 2.57 15 9 C 0.24 10.98 3.74 85.64 0.32 11.30 15 10 N -0.73 -30.20 5.73 -342.91 -1.96 -32.17 15 11 C 0.19 6.76 6.66 38.20 0.25 7.01 15 12 C -0.19 -6.17 9.09 22.41 0.20 -5.96 15 13 C 0.01 0.19 6.32 22.31 0.14 0.33 15 14 Cl -0.06 -1.44 28.95 -2.72 -0.08 -1.52 15 15 C -0.15 -3.10 9.82 22.31 0.22 -2.88 15 16 C -0.08 -1.74 10.02 22.29 0.22 -1.51 15 17 C -0.01 -0.20 7.31 22.48 0.16 -0.04 15 18 F -0.15 -4.88 16.64 44.97 0.75 -4.14 15 19 H 0.27 15.27 8.31 -92.70 -0.77 14.50 15 20 H 0.02 1.06 7.01 -2.39 -0.02 1.04 15 21 H 0.02 0.98 7.38 -2.39 -0.02 0.96 15 22 H 0.40 16.86 7.81 -92.71 -0.72 16.13 15 23 H 0.13 4.41 6.74 -2.91 -0.02 4.39 15 24 H 0.17 2.42 8.06 -2.91 -0.02 2.39 15 25 H 0.17 2.66 8.06 -2.91 -0.02 2.63 15 Total: -1.00 -61.31 242.96 3.58 -57.73 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.45 Total: 13.60 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: 2.24 Total: -20.92 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -1.67 Total: -88.53 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.75 Total: -4.14 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.78 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.08 Total: -1.52 kcal Total: -61.31 3.58 -57.73 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035083598.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.635 kcal (2) G-P(sol) polarization free energy of solvation -61.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds