Wall clock time and date at job start Mon Mar 30 2020 03:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.39842 * 120.00264 * 180.02562 * 10 9 7 12 12 C 1.38850 * 120.06832 * 359.71951 * 11 10 9 13 13 C 1.38156 * 119.97017 * 179.77006 * 12 11 10 14 14 C 1.38266 * 120.11727 * 0.53092 * 13 12 11 15 15 C 1.38394 * 120.15364 * 359.70532 * 14 13 12 16 16 Cl 1.73595 * 119.99164 * 180.02562 * 15 14 13 17 17 C 1.38392 * 120.02102 * 0.03973 * 15 14 13 18 18 F 1.35095 * 120.06007 * 179.97438 * 17 15 14 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 21 21 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 22 22 H 0.97010 * 119.99910 * 359.97438 * 10 9 7 23 23 H 1.07997 * 120.01667 * 0.02562 * 12 11 10 24 24 H 1.07997 * 119.93898 * 180.23164 * 13 12 11 25 25 H 1.08002 * 119.92536 * 179.71750 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7369 -4.9311 -0.0044 12 6 0.3721 -5.1865 0.0007 13 6 -0.0862 -6.4899 -0.0058 14 6 0.8120 -7.5411 -0.0063 15 6 2.1734 -7.2923 -0.0065 16 17 3.2973 -8.6153 -0.0078 17 6 2.6391 -5.9891 -0.0053 18 9 3.9679 -5.7453 -0.0049 19 1 -0.4849 0.8400 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6247 -2.5562 -0.8920 22 1 3.1568 -3.4354 -0.0029 23 1 -0.3309 -4.3667 0.0056 24 1 -1.1478 -6.6879 -0.0056 25 1 0.4503 -8.5587 -0.0068 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036723458.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:08 Heat of formation + Delta-G solvation = -36.129171 kcal Electronic energy + Delta-G solvation = -13134.634162 eV Core-core repulsion = 10473.936374 eV Total energy + Delta-G solvation = -2660.697788 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.41873 -38.85635 -36.51744 -35.05317 -32.72504 -30.05148 -29.30088 -26.48788 -23.42670 -22.12953 -21.06174 -17.91393 -16.96096 -16.10241 -16.01826 -15.37397 -14.77851 -14.36452 -14.12456 -13.40995 -13.19744 -12.87218 -12.55796 -12.23346 -11.79267 -11.32727 -11.14426 -10.97941 -10.95260 -10.75699 -10.25435 -9.65787 -9.51065 -8.64688 -8.41641 -6.83302 -6.29905 -4.35615 1.34876 1.72026 2.21552 3.18726 3.25311 3.28345 3.91649 4.09749 4.33454 4.57356 5.07897 5.14105 5.24700 5.59997 5.77786 6.12874 6.25032 6.53953 6.68252 6.83698 7.07678 7.25904 7.50864 7.80602 8.00732 8.43758 8.74571 9.31198 10.80585 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.052767 B = 0.005890 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.510756 B = 4752.609091 C = 5267.974495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.542 4.542 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.716 5.716 11 C 0.219 3.781 12 C -0.178 4.178 13 C -0.064 4.064 14 C -0.173 4.173 15 C -0.019 4.019 16 Cl -0.070 7.070 17 C 0.001 3.999 18 F -0.138 7.138 19 H 0.267 0.733 20 H 0.026 0.974 21 H 0.026 0.974 22 H 0.398 0.602 23 H 0.140 0.860 24 H 0.131 0.869 25 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.057 -12.329 -0.008 12.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.338 5.338 11 C 0.107 3.893 12 C -0.202 4.202 13 C -0.083 4.083 14 C -0.194 4.194 15 C -0.047 4.047 16 Cl -0.042 7.042 17 C -0.025 4.025 18 F -0.117 7.117 19 H 0.077 0.923 20 H 0.044 0.956 21 H 0.044 0.956 22 H 0.232 0.768 23 H 0.158 0.842 24 H 0.149 0.851 25 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.907 -12.058 -0.002 12.092 hybrid contribution 1.105 0.928 -0.009 1.443 sum 2.012 -11.130 -0.011 11.310 Atomic orbital electron populations 1.69930 1.06081 1.27548 1.49008 1.24917 0.94970 0.99513 0.94438 0.86376 0.79692 0.82336 0.78350 1.20353 1.20896 1.19685 1.21167 0.93484 0.90208 1.53208 0.91823 1.19244 0.88548 0.82354 0.97001 1.45617 1.10442 1.01778 1.75945 1.17963 0.92479 0.85302 0.93604 1.20794 0.93080 0.97905 1.08375 1.20843 0.99371 0.91384 0.96735 1.20499 0.89705 0.99976 1.09263 1.20634 0.91405 0.86494 1.06145 1.98342 1.62136 1.46690 1.96987 1.16763 0.77596 0.91336 1.16787 1.91429 1.30375 1.94904 1.94948 0.92327 0.95636 0.95641 0.76786 0.84180 0.85076 0.85194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.75 13.29 55.43 0.74 -24.02 15 2 C 0.07 1.75 5.46 -17.82 -0.10 1.65 15 3 Si 0.91 20.53 29.54 -169.99 -5.02 15.51 15 4 H -0.28 -6.24 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 7 C -0.54 -14.37 9.28 -34.44 -0.32 -14.69 15 8 H 0.06 1.64 7.60 -52.49 -0.40 1.24 15 9 C 0.25 6.07 4.67 -5.19 -0.02 6.05 15 10 N -0.72 -15.09 5.73 -59.74 -0.34 -15.43 15 11 C 0.22 4.14 6.66 -83.68 -0.56 3.58 15 12 C -0.18 -3.03 9.31 -39.39 -0.37 -3.39 15 13 C -0.06 -0.89 10.04 -39.60 -0.40 -1.29 15 14 C -0.17 -2.38 9.82 -39.51 -0.39 -2.76 15 15 C -0.02 -0.29 6.32 -39.47 -0.25 -0.54 15 16 Cl -0.07 -0.99 28.61 -51.86 -1.48 -2.48 15 17 C 0.00 0.01 7.28 -39.23 -0.29 -0.27 15 18 F -0.14 -2.53 16.21 2.25 0.04 -2.50 15 19 H 0.27 7.02 8.31 -40.82 -0.34 6.68 15 20 H 0.03 0.66 7.94 -51.93 -0.41 0.25 15 21 H 0.03 0.66 7.96 -51.93 -0.41 0.25 15 22 H 0.40 8.17 7.81 -40.82 -0.32 7.85 15 23 H 0.14 2.46 6.74 -52.49 -0.35 2.11 15 24 H 0.13 1.40 8.06 -52.49 -0.42 0.98 15 25 H 0.13 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 246.01 15.07 3.71 3.71 Total: -1.00 -27.06 246.01 -6.93 -33.99 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -1.88 Total: 2.89 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.69 Total: -11.67 kcal Atomic # 7 Polarization: -39.85 SS G_CDS: 0.39 Total: -39.45 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.48 Total: -2.48 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -27.06 -6.93 -33.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723458.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.142 kcal (2) G-P(sol) polarization free energy of solvation -27.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds