Wall clock time and date at job start Mon Mar 30 2020 03:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 C 1.39842 * 120.00264 * 180.02562 * 10 9 7 12 12 C 1.38850 * 120.06832 * 359.71951 * 11 10 9 13 13 C 1.38156 * 119.97017 * 179.77006 * 12 11 10 14 14 C 1.38266 * 120.11727 * 0.53092 * 13 12 11 15 15 C 1.38394 * 120.15364 * 359.70532 * 14 13 12 16 16 Cl 1.73595 * 119.99164 * 180.02562 * 15 14 13 17 17 C 1.38392 * 120.02102 * 0.03973 * 15 14 13 18 18 F 1.35095 * 120.06007 * 179.97438 * 17 15 14 19 19 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 21 21 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 22 22 H 0.97010 * 119.99910 * 359.97438 * 10 9 7 23 23 H 1.07997 * 120.01667 * 0.02562 * 12 11 10 24 24 H 1.07997 * 119.93898 * 180.23164 * 13 12 11 25 25 H 1.08002 * 119.92536 * 179.71750 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 6 1.7369 -4.9311 -0.0044 12 6 0.3721 -5.1865 0.0007 13 6 -0.0862 -6.4899 -0.0058 14 6 0.8120 -7.5411 -0.0063 15 6 2.1734 -7.2923 -0.0065 16 17 3.2973 -8.6153 -0.0078 17 6 2.6391 -5.9891 -0.0053 18 9 3.9679 -5.7453 -0.0049 19 1 -0.4849 0.8400 0.0004 20 1 0.6240 -2.5575 0.8880 21 1 0.6247 -2.5562 -0.8920 22 1 3.1568 -3.4354 -0.0029 23 1 -0.3309 -4.3667 0.0056 24 1 -1.1478 -6.6879 -0.0056 25 1 0.4503 -8.5587 -0.0068 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036723458.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:08 Heat of formation + Delta-G solvation = -51.635075 kcal Electronic energy + Delta-G solvation = -13135.306548 eV Core-core repulsion = 10473.936374 eV Total energy + Delta-G solvation = -2661.370174 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 229.036 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.82007 -40.19011 -37.77262 -36.60810 -34.63694 -31.34568 -30.87654 -28.23359 -25.15354 -23.48168 -22.57657 -19.51084 -18.43684 -17.73866 -17.47019 -16.77450 -16.60119 -15.69303 -15.48469 -15.04131 -14.94841 -14.21720 -14.07420 -13.87869 -13.05156 -12.92326 -12.89472 -12.52797 -12.43929 -12.10544 -11.92657 -11.47949 -11.15551 -10.60833 -9.68318 -8.35816 -8.33862 -6.47073 0.05938 0.43570 0.99430 1.40553 1.40815 1.52147 2.31191 2.63184 2.68115 3.01799 3.21938 3.95793 3.98837 4.38625 4.45658 4.80845 5.01393 5.05313 5.25179 5.25281 5.45184 5.46766 5.73841 5.85460 6.28878 6.62582 6.91173 7.24848 8.77443 Molecular weight = 229.04amu Principal moments of inertia in cm(-1) A = 0.052767 B = 0.005890 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.510756 B = 4752.609091 C = 5267.974495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.015 3.985 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.563 4.563 8 H 0.065 0.935 9 C 0.271 3.729 10 N -0.730 5.730 11 C 0.191 3.809 12 C -0.189 4.189 13 C -0.049 4.049 14 C -0.151 4.151 15 C -0.026 4.026 16 Cl -0.054 7.054 17 C -0.013 4.013 18 F -0.146 7.146 19 H 0.271 0.729 20 H 0.004 0.996 21 H 0.003 0.997 22 H 0.396 0.604 23 H 0.127 0.873 24 H 0.172 0.828 25 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.898 -13.642 -0.015 13.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.601 4.601 8 H 0.083 0.917 9 C 0.149 3.851 10 N -0.354 5.354 11 C 0.082 3.918 12 C -0.213 4.213 13 C -0.068 4.068 14 C -0.172 4.172 15 C -0.054 4.054 16 Cl -0.025 7.025 17 C -0.038 4.038 18 F -0.125 7.125 19 H 0.080 0.920 20 H 0.021 0.979 21 H 0.021 0.979 22 H 0.231 0.769 23 H 0.145 0.855 24 H 0.189 0.811 25 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.748 -13.431 -0.010 13.452 hybrid contribution 1.107 1.129 -0.007 1.581 sum 1.854 -12.302 -0.017 12.441 Atomic orbital electron populations 1.70036 1.07535 1.28604 1.49696 1.25817 0.95840 1.03066 0.93838 0.85311 0.78449 0.77863 0.78573 1.19677 1.20293 1.19089 1.21543 0.93852 0.91433 1.53265 0.91657 1.18713 0.88444 0.83134 0.94812 1.45250 1.09594 1.02094 1.78491 1.18212 0.93604 0.84558 0.95398 1.20927 0.92163 0.99306 1.08887 1.21266 1.01533 0.89689 0.94300 1.20996 0.88586 1.01719 1.05888 1.20855 0.92666 0.86157 1.05748 1.98350 1.61860 1.45423 1.96865 1.16953 0.77175 0.92090 1.17613 1.91400 1.30909 1.95067 1.95124 0.92034 0.97866 0.97879 0.76946 0.85538 0.81058 0.81422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 13.29 21.45 0.28 -51.96 15 2 C 0.02 0.81 5.46 84.66 0.46 1.27 15 3 Si 0.97 42.25 29.54 68.60 2.03 44.27 15 4 H -0.27 -11.43 7.11 99.48 0.71 -10.73 15 5 H -0.28 -11.70 7.11 99.48 0.71 -11.00 15 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 15 7 C -0.56 -30.60 9.28 25.60 0.24 -30.37 15 8 H 0.07 3.43 7.60 -2.91 -0.02 3.41 15 9 C 0.27 13.82 4.67 85.63 0.40 14.22 15 10 N -0.73 -32.00 5.73 -342.91 -1.96 -33.97 15 11 C 0.19 7.33 6.66 38.20 0.25 7.58 15 12 C -0.19 -6.38 9.31 22.40 0.21 -6.18 15 13 C -0.05 -1.21 10.04 22.26 0.22 -0.99 15 14 C -0.15 -3.58 9.82 22.31 0.22 -3.36 15 15 C -0.03 -0.77 6.32 22.34 0.14 -0.62 15 16 Cl -0.05 -1.39 28.61 -2.72 -0.08 -1.47 15 17 C -0.01 -0.46 7.28 22.50 0.16 -0.30 15 18 F -0.15 -5.39 16.21 44.97 0.73 -4.66 15 19 H 0.27 14.37 8.31 -92.71 -0.77 13.60 15 20 H 0.00 0.19 7.94 -2.39 -0.02 0.17 15 21 H 0.00 0.18 7.96 -2.39 -0.02 0.16 15 22 H 0.40 17.01 7.81 -92.70 -0.72 16.29 15 23 H 0.13 4.58 6.74 -2.91 -0.02 4.56 15 24 H 0.17 2.87 8.06 -2.91 -0.02 2.84 15 25 H 0.17 2.79 8.06 -2.91 -0.02 2.76 15 Total: -1.00 -58.77 246.01 3.81 -54.96 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.50 Total: 11.57 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: 2.31 Total: -18.73 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -1.68 Total: -85.93 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.73 Total: -4.66 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -0.08 Total: -1.47 kcal Total: -58.77 3.81 -54.96 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036723458.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.325 kcal (2) G-P(sol) polarization free energy of solvation -58.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds