Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31674 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00324 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00275 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00074 * 3 2 1 7 7 C 1.38664 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99731 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99803 * 0.27759 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72321 * 9 7 2 11 11 C 1.39746 * 120.12951 * 269.72306 * 10 9 7 12 12 N 1.39739 * 120.10351 * 0.02562 * 11 10 9 13 13 C 1.38671 * 119.78176 * 179.76715 * 11 10 9 14 14 C 1.38270 * 120.03899 * 0.50833 * 13 11 10 15 15 C 1.38333 * 120.25871 * 359.74002 * 14 13 11 16 16 C 1.38252 * 120.22089 * 0.02562 * 15 14 13 17 17 Cl 1.73600 * 120.02072 * 179.97438 * 16 15 14 18 18 H 0.96996 * 120.00488 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00632 * 0.02562 * 12 11 10 20 20 H 0.97004 * 119.99789 * 180.02562 * 12 11 10 21 21 H 1.08008 * 119.98061 * 180.24899 * 13 11 10 22 22 H 1.08001 * 119.87233 * 179.76637 * 14 13 11 23 23 H 1.08004 * 119.89042 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2507 1.6178 0.0000 4 1 2.4981 2.0465 -1.4001 5 1 1.4481 2.6527 0.7001 6 1 3.5483 1.4402 0.7000 7 6 2.0101 -1.2008 -0.0005 8 1 3.0901 -1.2007 -0.0010 9 16 1.1292 -2.7268 -0.0086 10 6 2.4790 -3.8593 -0.0146 11 6 3.0126 -4.3083 -1.2256 12 7 2.4777 -3.8600 -2.4363 13 6 4.0780 -5.1958 -1.2219 14 6 4.6027 -5.6424 -0.0231 15 6 4.0724 -5.2031 1.1767 16 6 3.0133 -4.3145 1.1855 17 17 2.3515 -3.7671 2.6941 18 1 -0.4851 0.8400 0.0004 19 1 1.7351 -3.2360 -2.4370 20 1 2.8491 -4.1729 -3.2760 21 1 4.4956 -5.5418 -2.1560 22 1 5.4301 -6.3366 -0.0234 23 1 4.4872 -5.5554 2.1096 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037204333.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = 7.329073 kcal Electronic energy + Delta-G solvation = -11405.337921 eV Core-core repulsion = 9176.904706 eV Total energy + Delta-G solvation = -2228.433215 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.002 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.64837 -35.77675 -33.80606 -32.45512 -30.09757 -28.07096 -25.51818 -22.38685 -21.60499 -17.86022 -16.90509 -16.40743 -15.64858 -14.81116 -13.95163 -13.78832 -13.73261 -13.26193 -12.80357 -11.68733 -11.30612 -11.25777 -11.12408 -11.06341 -10.71774 -10.18510 -9.94685 -9.80248 -9.09845 -8.81283 -7.91659 -7.03034 -6.61484 -6.22998 -3.96110 1.67249 2.01631 2.84451 3.20848 3.24530 3.29708 3.57250 4.12622 4.30035 4.46244 5.11811 5.32196 5.53723 5.61134 5.70357 6.08894 6.11906 6.53473 6.72197 6.85050 7.14685 7.62882 7.96889 8.36001 8.38993 9.22385 10.82259 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.010826 C = 0.009325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.176599 B = 2585.809504 C = 3002.089620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.512 4.512 8 H 0.073 0.927 9 S -0.015 6.015 10 C -0.182 4.182 11 C 0.262 3.738 12 N -0.861 5.861 13 C -0.217 4.217 14 C -0.060 4.060 15 C -0.193 4.193 16 C 0.048 3.952 17 Cl -0.058 7.058 18 H 0.268 0.732 19 H 0.413 0.587 20 H 0.389 0.611 21 H 0.117 0.883 22 H 0.121 0.879 23 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.364 -8.380 -1.585 10.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.135 4.135 3 Si 0.743 3.257 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.660 4.660 8 H 0.091 0.909 9 S 0.219 5.781 10 C -0.298 4.298 11 C 0.151 3.849 12 N -0.402 5.402 13 C -0.242 4.242 14 C -0.079 4.079 15 C -0.215 4.215 16 C 0.017 3.983 17 Cl -0.028 7.028 18 H 0.078 0.922 19 H 0.248 0.752 20 H 0.216 0.784 21 H 0.135 0.865 22 H 0.139 0.861 23 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.930 -8.347 -1.434 9.799 hybrid contribution 1.801 1.378 -0.171 2.274 sum 6.731 -6.969 -1.605 9.821 Atomic orbital electron populations 1.70000 1.05765 1.27436 1.47722 1.24944 0.95057 0.98875 0.94636 0.86183 0.79618 0.81595 0.78296 1.20373 1.20778 1.19626 1.22824 0.94850 0.90370 1.57974 0.90916 1.83456 1.03195 0.96409 1.95086 1.22122 1.07816 1.08248 0.91582 1.17699 0.90192 0.90195 0.86826 1.42986 1.40534 1.52798 1.03839 1.20510 1.00745 1.04569 0.98339 1.20705 0.98004 0.97732 0.91456 1.20673 0.99461 1.02897 0.98468 1.21119 0.94523 0.95560 0.87116 1.98348 1.85243 1.88934 1.30310 0.92238 0.75219 0.78368 0.86475 0.86077 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.25 13.22 55.48 0.73 -24.52 14 2 C 0.07 2.04 5.49 -17.46 -0.10 1.94 14 3 Si 0.92 21.50 29.55 -169.99 -5.02 16.48 14 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 14 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 14 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 14 7 C -0.51 -14.32 9.46 30.89 0.29 -14.02 14 8 H 0.07 2.07 7.79 -52.49 -0.41 1.66 14 9 S -0.02 -0.39 18.85 -107.50 -2.03 -2.42 14 10 C -0.18 -4.00 5.47 -38.72 -0.21 -4.21 14 11 C 0.26 4.98 6.77 -83.53 -0.57 4.42 14 12 N -0.86 -14.51 9.03 32.54 0.29 -14.22 14 13 C -0.22 -3.45 9.89 -39.41 -0.39 -3.84 14 14 C -0.06 -0.90 10.04 -39.53 -0.40 -1.30 14 15 C -0.19 -3.28 9.82 -39.54 -0.39 -3.66 14 16 C 0.05 0.97 6.34 -39.28 -0.25 0.73 14 17 Cl -0.06 -1.18 27.84 -51.86 -1.44 -2.62 14 18 H 0.27 7.28 8.31 -40.82 -0.34 6.94 14 19 H 0.41 7.73 7.38 -40.82 -0.30 7.43 14 20 H 0.39 5.03 8.84 -40.82 -0.36 4.67 14 21 H 0.12 1.51 8.06 -52.48 -0.42 1.08 14 22 H 0.12 1.39 8.06 -52.49 -0.42 0.96 14 23 H 0.12 1.77 8.06 -52.48 -0.42 1.35 14 LS Contribution 239.58 15.07 3.61 3.61 Total: -1.00 -30.25 239.58 -7.33 -37.58 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -1.47 Total: 6.07 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.00 Total: -19.96 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 1.03 Total: -38.74 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.03 Total: -2.42 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.44 Total: -2.62 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -30.25 -7.33 -37.58 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037204333.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.912 kcal (2) G-P(sol) polarization free energy of solvation -30.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds