Wall clock time and date at job start Mon Mar 30 2020 03:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31674 * 1 3 3 Si 1.86803 * 119.99780 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00324 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00275 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00074 * 3 2 1 7 7 C 1.38664 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99731 * 179.97438 * 7 2 1 9 9 S 1.76199 * 119.99803 * 0.27759 * 7 2 1 10 10 C 1.76201 * 99.99986 * 179.72321 * 9 7 2 11 11 C 1.39746 * 120.12951 * 269.72306 * 10 9 7 12 12 N 1.39739 * 120.10351 * 0.02562 * 11 10 9 13 13 C 1.38671 * 119.78176 * 179.76715 * 11 10 9 14 14 C 1.38270 * 120.03899 * 0.50833 * 13 11 10 15 15 C 1.38333 * 120.25871 * 359.74002 * 14 13 11 16 16 C 1.38252 * 120.22089 * 0.02562 * 15 14 13 17 17 Cl 1.73600 * 120.02072 * 179.97438 * 16 15 14 18 18 H 0.96996 * 120.00488 * 359.97438 * 1 2 3 19 19 H 0.96996 * 120.00632 * 0.02562 * 12 11 10 20 20 H 0.97004 * 119.99789 * 180.02562 * 12 11 10 21 21 H 1.08008 * 119.98061 * 180.24899 * 13 11 10 22 22 H 1.08001 * 119.87233 * 179.76637 * 14 13 11 23 23 H 1.08004 * 119.89042 * 180.02562 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2507 1.6178 0.0000 4 1 2.4981 2.0465 -1.4001 5 1 1.4481 2.6527 0.7001 6 1 3.5483 1.4402 0.7000 7 6 2.0101 -1.2008 -0.0005 8 1 3.0901 -1.2007 -0.0010 9 16 1.1292 -2.7268 -0.0086 10 6 2.4790 -3.8593 -0.0146 11 6 3.0126 -4.3083 -1.2256 12 7 2.4777 -3.8600 -2.4363 13 6 4.0780 -5.1958 -1.2219 14 6 4.6027 -5.6424 -0.0231 15 6 4.0724 -5.2031 1.1767 16 6 3.0133 -4.3145 1.1855 17 17 2.3515 -3.7671 2.6941 18 1 -0.4851 0.8400 0.0004 19 1 1.7351 -3.2360 -2.4370 20 1 2.8491 -4.1729 -3.2760 21 1 4.4956 -5.5418 -2.1560 22 1 5.4301 -6.3366 -0.0234 23 1 4.4872 -5.5554 2.1096 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037204333.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:26 Heat of formation + Delta-G solvation = -12.186769 kcal Electronic energy + Delta-G solvation = -11406.184191 eV Core-core repulsion = 9176.904706 eV Total energy + Delta-G solvation = -2229.279486 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.002 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.02271 -37.29400 -35.15904 -34.56864 -31.49277 -29.43177 -27.65369 -23.77874 -22.98462 -19.82107 -18.36906 -17.78505 -17.12229 -16.86818 -15.47353 -15.19951 -15.16117 -14.80528 -14.45888 -13.25272 -13.14482 -12.96513 -12.78617 -12.63334 -12.42603 -11.82277 -11.61123 -11.23954 -11.13993 -10.62250 -9.48523 -8.63376 -8.49542 -8.23654 -6.07088 0.25130 0.64518 1.28465 1.35515 1.37227 1.47722 1.86864 2.30383 2.82048 3.00277 3.14294 3.52855 4.15379 4.31960 4.52014 4.68991 4.79710 5.24501 5.36212 5.46068 5.53889 5.89666 6.23745 6.58314 7.08867 7.09848 8.74180 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.028300 B = 0.010826 C = 0.009325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.176599 B = 2585.809504 C = 3002.089620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.024 3.976 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.057 0.943 9 S -0.057 6.057 10 C -0.219 4.219 11 C 0.249 3.751 12 N -0.857 5.857 13 C -0.208 4.208 14 C -0.042 4.042 15 C -0.194 4.194 16 C 0.026 3.974 17 Cl -0.074 7.074 18 H 0.271 0.729 19 H 0.403 0.597 20 H 0.408 0.592 21 H 0.156 0.844 22 H 0.171 0.829 23 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.679 -9.436 -2.338 13.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.197 1.197 7 C -0.669 4.669 8 H 0.076 0.924 9 S 0.177 5.823 10 C -0.336 4.336 11 C 0.137 3.863 12 N -0.397 5.397 13 C -0.233 4.233 14 C -0.061 4.061 15 C -0.216 4.216 16 C -0.004 4.004 17 Cl -0.045 7.045 18 H 0.080 0.920 19 H 0.235 0.765 20 H 0.238 0.762 21 H 0.174 0.826 22 H 0.189 0.811 23 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 7.261 -9.428 -2.212 12.103 hybrid contribution 1.176 1.538 0.026 1.936 sum 8.436 -7.890 -2.186 11.756 Atomic orbital electron populations 1.70108 1.07174 1.28366 1.48689 1.25802 0.95883 1.02225 0.94198 0.85195 0.78142 0.77414 0.78780 1.19138 1.20035 1.19652 1.22956 0.94225 0.92013 1.57741 0.92442 1.83315 1.06491 0.97028 1.95465 1.22004 1.08492 1.09370 0.93718 1.17997 0.91127 0.90969 0.86213 1.42914 1.40101 1.52338 1.04366 1.20989 0.98984 1.02709 1.00568 1.21301 0.98011 0.96749 0.90031 1.21045 0.98122 1.01737 1.00675 1.21360 0.95929 0.97019 0.86137 1.98331 1.85703 1.89320 1.31131 0.92007 0.76471 0.76173 0.82600 0.81142 0.83667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.51 13.22 21.63 0.29 -53.23 14 2 C 0.02 1.34 5.49 84.82 0.47 1.81 14 3 Si 0.98 44.44 29.55 68.60 2.03 46.46 14 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 14 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 14 6 H -0.27 -12.18 7.11 99.48 0.71 -11.47 14 7 C -0.52 -29.86 9.46 67.92 0.64 -29.21 14 8 H 0.06 3.35 7.79 -2.91 -0.02 3.33 14 9 S -0.06 -3.01 18.85 -56.49 -1.06 -4.07 14 10 C -0.22 -9.66 5.47 22.82 0.12 -9.53 14 11 C 0.25 9.07 6.77 38.35 0.26 9.33 14 12 N -0.86 -28.05 9.03 -50.96 -0.46 -28.51 14 13 C -0.21 -5.77 9.89 22.38 0.22 -5.55 14 14 C -0.04 -1.06 10.04 22.30 0.22 -0.84 14 15 C -0.19 -6.02 9.82 22.30 0.22 -5.80 14 16 C 0.03 1.04 6.34 22.46 0.14 1.18 14 17 Cl -0.07 -3.06 27.84 -2.72 -0.08 -3.14 14 18 H 0.27 14.95 8.31 -92.71 -0.77 14.18 14 19 H 0.40 15.27 7.38 -92.71 -0.68 14.58 14 20 H 0.41 9.73 8.84 -92.71 -0.82 8.91 14 21 H 0.16 3.11 8.06 -2.91 -0.02 3.08 14 22 H 0.17 2.69 8.06 -2.91 -0.02 2.67 14 23 H 0.15 3.74 8.06 -2.91 -0.02 3.72 14 Total: -1.00 -66.96 239.58 2.76 -64.19 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -0.25 Total: 16.91 kcal Atomic # 6 Polarization: -40.91 SS G_CDS: 2.30 Total: -38.61 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -0.17 Total: -81.74 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -1.06 Total: -4.07 kcal Atomic # 17 Polarization: -3.06 SS G_CDS: -0.08 Total: -3.14 kcal Total: -66.96 2.76 -64.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037204333.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.008 kcal (2) G-P(sol) polarization free energy of solvation -66.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds