Wall clock time and date at job start Mon Mar 30 2020 03:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31683 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47525 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 300.00461 * 3 2 1 6 6 H 1.48505 * 109.46979 * 60.00231 * 3 2 1 7 7 C 1.38651 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99820 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00127 * 185.68005 * 9 7 2 11 11 C 1.39114 * 120.02310 * 6.96292 * 10 9 7 12 12 C 1.37938 * 119.99934 * 179.79467 * 11 10 9 13 13 C 1.39026 * 120.03555 * 0.45872 * 12 11 10 14 14 N 1.39746 * 119.97405 * 179.76661 * 13 12 11 15 15 C 1.38955 * 120.04276 * 359.79951 * 13 12 11 16 16 C 1.38060 * 120.00874 * 359.97066 * 15 13 12 17 17 Cl 1.73601 * 120.02179 * 179.97438 * 16 15 13 18 18 H 0.96991 * 120.00043 * 359.97438 * 1 2 3 19 19 H 1.08008 * 120.00064 * 0.02562 * 11 10 9 20 20 H 1.08000 * 119.98450 * 180.21349 * 12 11 10 21 21 H 0.97000 * 119.99336 * 180.02562 * 14 13 12 22 22 H 0.96991 * 120.00383 * 0.03194 * 14 13 12 23 23 H 1.07998 * 120.00099 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3168 0.0000 0.0000 3 14 2.2508 1.6177 0.0000 4 1 3.7109 1.3464 -0.0006 5 1 1.8920 2.3965 -1.2124 6 1 1.8921 2.3964 1.2126 7 6 2.0101 -1.2008 -0.0005 8 1 3.0901 -1.2007 -0.0010 9 16 1.1291 -2.7267 -0.0019 10 6 2.4714 -3.8551 0.1696 11 6 3.7567 -3.3774 0.4041 12 6 4.8065 -4.2614 0.5425 13 6 4.5825 -5.6295 0.4383 14 7 5.6478 -6.5238 0.5739 15 6 3.3002 -6.1083 0.1987 16 6 2.2474 -5.2253 0.0646 17 17 0.6454 -5.8230 -0.2353 18 1 -0.4850 0.8400 0.0004 19 1 3.9321 -2.3145 0.4815 20 1 5.8037 -3.8904 0.7280 21 1 5.4919 -7.4784 0.5008 22 1 6.5430 -6.1899 0.7411 23 1 3.1269 -7.1712 0.1183 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037205047.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:29 Heat of formation + Delta-G solvation = 9.615881 kcal Electronic energy + Delta-G solvation = -11164.575155 eV Core-core repulsion = 8936.241104 eV Total energy + Delta-G solvation = -2228.334052 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.002 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.60588 -35.85625 -33.83231 -32.67834 -30.16624 -28.14671 -25.77870 -22.19267 -21.66401 -18.16649 -16.83356 -16.34682 -15.84709 -15.02301 -14.00581 -13.86908 -13.25028 -13.18007 -13.06433 -12.13926 -11.45954 -11.20041 -11.10480 -10.95994 -10.56173 -10.24856 -10.12669 -9.83953 -9.23808 -8.52654 -8.20389 -7.81567 -6.43343 -6.24015 -4.11030 1.85539 2.08881 2.80906 3.13268 3.14487 3.22612 3.47708 4.06299 4.26840 4.31737 4.98177 5.17747 5.42992 5.60982 6.02345 6.15337 6.41972 6.57548 6.77005 7.07914 7.20217 7.52720 7.84024 8.04555 8.20019 9.04497 10.63631 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.031859 B = 0.009058 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.650902 B = 3090.372492 C = 3952.824454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.077 3.923 3 Si 0.922 3.078 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.554 4.554 8 H 0.092 0.908 9 S 0.061 5.939 10 C -0.125 4.125 11 C -0.089 4.089 12 C -0.170 4.170 13 C 0.177 3.823 14 N -0.886 5.886 15 C -0.169 4.169 16 C -0.006 4.006 17 Cl -0.077 7.077 18 H 0.272 0.728 19 H 0.144 0.856 20 H 0.114 0.886 21 H 0.392 0.608 22 H 0.393 0.607 23 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.691 -9.114 0.785 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.133 4.133 3 Si 0.748 3.252 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.701 4.701 8 H 0.109 0.891 9 S 0.316 5.684 10 C -0.242 4.242 11 C -0.115 4.115 12 C -0.194 4.194 13 C 0.071 3.929 14 N -0.428 5.428 15 C -0.194 4.194 16 C -0.043 4.043 17 Cl -0.048 7.048 18 H 0.082 0.918 19 H 0.161 0.839 20 H 0.132 0.868 21 H 0.219 0.781 22 H 0.220 0.780 23 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.920 -8.969 0.627 10.765 hybrid contribution 2.044 0.873 0.155 2.228 sum 7.964 -8.097 0.783 11.384 Atomic orbital electron populations 1.70032 1.06057 1.28012 1.45714 1.25070 0.95099 0.99520 0.93589 0.86049 0.79792 0.81297 0.78087 1.19256 1.20337 1.20330 1.23403 0.95989 0.91555 1.59154 0.89082 1.83693 1.04832 0.96122 1.83768 1.22452 1.00889 0.95962 1.04946 1.21245 0.90754 1.00574 0.98923 1.20541 0.99112 0.91182 1.08587 1.17383 0.87459 0.89619 0.98432 1.42216 1.08058 1.07288 1.85214 1.20064 0.90517 0.98437 1.10386 1.20013 0.85358 0.91898 1.07030 1.98312 1.24168 1.87944 1.94345 0.91813 0.83894 0.86786 0.78131 0.77981 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.22 55.48 0.73 -23.91 14 2 C 0.08 2.09 5.49 -17.46 -0.10 2.00 14 3 Si 0.92 20.56 29.55 -169.99 -5.02 15.54 14 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 14 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 14 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 14 7 C -0.55 -15.05 8.98 30.89 0.28 -14.77 14 8 H 0.09 2.35 4.97 -52.49 -0.26 2.09 14 9 S 0.06 1.60 20.55 -107.50 -2.21 -0.61 14 10 C -0.13 -2.81 6.10 -38.89 -0.24 -3.05 14 11 C -0.09 -1.84 9.21 -39.37 -0.36 -2.21 14 12 C -0.17 -2.92 9.88 -39.40 -0.39 -3.31 14 13 C 0.18 2.81 6.76 -83.69 -0.57 2.24 14 14 N -0.89 -10.02 9.09 32.46 0.30 -9.73 14 15 C -0.17 -2.88 9.67 -39.38 -0.38 -3.26 14 16 C -0.01 -0.12 6.34 -39.28 -0.25 -0.37 14 17 Cl -0.08 -1.45 27.83 -51.86 -1.44 -2.89 14 18 H 0.27 7.19 8.31 -40.82 -0.34 6.85 14 19 H 0.14 3.07 5.02 -52.48 -0.26 2.81 14 20 H 0.11 1.65 8.06 -52.49 -0.42 1.22 14 21 H 0.39 3.62 8.84 -40.82 -0.36 3.26 14 22 H 0.39 3.65 8.84 -40.82 -0.36 3.28 14 23 H 0.12 1.74 8.06 -52.49 -0.42 1.31 14 LS Contribution 236.10 15.07 3.56 3.56 Total: -1.00 -29.45 236.10 -7.32 -36.77 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -1.23 Total: 4.01 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: -2.00 Total: -22.73 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 1.03 Total: -33.64 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.21 Total: -0.61 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -1.44 Total: -2.89 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.45 -7.32 -36.77 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037205047.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.383 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds