Wall clock time and date at job start Mon Mar 30 2020 03:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31683 * 1 3 3 Si 1.86794 * 120.00089 * 2 1 4 4 H 1.48501 * 109.47525 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47278 * 300.00461 * 3 2 1 6 6 H 1.48505 * 109.46979 * 60.00231 * 3 2 1 7 7 C 1.38651 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99820 * 179.97438 * 7 2 1 9 9 S 1.76197 * 120.00242 * 0.02562 * 7 2 1 10 10 C 1.76197 * 100.00127 * 185.68005 * 9 7 2 11 11 C 1.39114 * 120.02310 * 6.96292 * 10 9 7 12 12 C 1.37938 * 119.99934 * 179.79467 * 11 10 9 13 13 C 1.39026 * 120.03555 * 0.45872 * 12 11 10 14 14 N 1.39746 * 119.97405 * 179.76661 * 13 12 11 15 15 C 1.38955 * 120.04276 * 359.79951 * 13 12 11 16 16 C 1.38060 * 120.00874 * 359.97066 * 15 13 12 17 17 Cl 1.73601 * 120.02179 * 179.97438 * 16 15 13 18 18 H 0.96991 * 120.00043 * 359.97438 * 1 2 3 19 19 H 1.08008 * 120.00064 * 0.02562 * 11 10 9 20 20 H 1.08000 * 119.98450 * 180.21349 * 12 11 10 21 21 H 0.97000 * 119.99336 * 180.02562 * 14 13 12 22 22 H 0.96991 * 120.00383 * 0.03194 * 14 13 12 23 23 H 1.07998 * 120.00099 * 180.02562 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3168 0.0000 0.0000 3 14 2.2508 1.6177 0.0000 4 1 3.7109 1.3464 -0.0006 5 1 1.8920 2.3965 -1.2124 6 1 1.8921 2.3964 1.2126 7 6 2.0101 -1.2008 -0.0005 8 1 3.0901 -1.2007 -0.0010 9 16 1.1291 -2.7267 -0.0019 10 6 2.4714 -3.8551 0.1696 11 6 3.7567 -3.3774 0.4041 12 6 4.8065 -4.2614 0.5425 13 6 4.5825 -5.6295 0.4383 14 7 5.6478 -6.5238 0.5739 15 6 3.3002 -6.1083 0.1987 16 6 2.2474 -5.2253 0.0646 17 17 0.6454 -5.8230 -0.2353 18 1 -0.4850 0.8400 0.0004 19 1 3.9321 -2.3145 0.4815 20 1 5.8037 -3.8904 0.7280 21 1 5.4919 -7.4784 0.5008 22 1 6.5430 -6.1899 0.7411 23 1 3.1269 -7.1712 0.1183 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037205047.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:29 Heat of formation + Delta-G solvation = -9.631371 kcal Electronic energy + Delta-G solvation = -11165.409779 eV Core-core repulsion = 8936.241104 eV Total energy + Delta-G solvation = -2229.168675 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 229.002 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.04581 -37.35246 -35.14539 -34.68135 -31.64969 -29.52756 -27.77106 -23.69618 -23.09609 -20.02834 -18.26603 -17.60329 -17.41266 -16.91198 -15.51733 -15.27116 -14.91053 -14.65679 -14.62770 -13.88305 -13.00040 -12.83612 -12.82053 -12.59661 -12.18097 -11.84820 -11.71099 -11.54730 -11.09543 -10.43740 -9.67294 -9.35806 -8.42784 -7.95427 -6.14563 0.37742 0.59568 1.23610 1.35245 1.39931 1.51445 1.76069 2.25030 2.82157 2.98502 3.15690 3.26488 4.00259 4.24872 4.59404 4.68976 4.95073 5.16652 5.31397 5.49302 5.57273 5.82191 6.18532 6.66306 7.01190 7.14810 8.66396 Molecular weight = 229.00amu Principal moments of inertia in cm(-1) A = 0.031859 B = 0.009058 C = 0.007082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 878.650902 B = 3090.372492 C = 3952.824454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.021 3.979 3 Si 0.995 3.005 4 H -0.257 1.257 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.563 4.563 8 H 0.097 0.903 9 S -0.021 6.021 10 C -0.153 4.153 11 C -0.099 4.099 12 C -0.172 4.172 13 C 0.206 3.794 14 N -0.861 5.861 15 C -0.174 4.174 16 C -0.009 4.009 17 Cl -0.074 7.074 18 H 0.274 0.726 19 H 0.128 0.872 20 H 0.147 0.853 21 H 0.408 0.592 22 H 0.409 0.591 23 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.609 -10.497 1.056 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.185 4.185 3 Si 0.816 3.184 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.710 4.710 8 H 0.114 0.886 9 S 0.229 5.771 10 C -0.270 4.270 11 C -0.124 4.124 12 C -0.196 4.196 13 C 0.097 3.903 14 N -0.404 5.404 15 C -0.198 4.198 16 C -0.044 4.044 17 Cl -0.045 7.045 18 H 0.083 0.917 19 H 0.145 0.855 20 H 0.165 0.835 21 H 0.238 0.762 22 H 0.239 0.761 23 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.934 -10.451 0.910 13.779 hybrid contribution 1.329 0.998 0.091 1.664 sum 10.262 -9.454 1.001 13.989 Atomic orbital electron populations 1.70166 1.07767 1.28931 1.47391 1.26086 0.95974 1.03241 0.93153 0.84957 0.78765 0.76420 0.78226 1.18082 1.19814 1.19704 1.23693 0.96335 0.92046 1.58921 0.88576 1.83656 1.08430 0.98007 1.86979 1.22263 1.00057 0.96000 1.08665 1.21225 0.91189 1.00565 0.99400 1.20786 0.99553 0.91374 1.07907 1.17477 0.88125 0.89821 0.94901 1.42198 1.07624 1.07661 1.82880 1.20378 0.90096 0.99531 1.09844 1.20271 0.86407 0.91502 1.06240 1.98311 1.24275 1.87626 1.94318 0.91664 0.85488 0.83492 0.76250 0.76124 0.83191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.68 13.22 21.62 0.29 -53.40 14 2 C 0.02 1.15 5.49 84.81 0.47 1.62 14 3 Si 0.99 42.80 29.55 68.60 2.03 44.83 14 4 H -0.26 -10.43 7.11 99.48 0.71 -9.73 14 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 14 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 14 7 C -0.56 -31.65 8.98 67.92 0.61 -31.04 14 8 H 0.10 5.10 4.97 -2.91 -0.01 5.09 14 9 S -0.02 -1.14 20.55 -56.49 -1.16 -2.30 14 10 C -0.15 -6.97 6.10 22.72 0.14 -6.83 14 11 C -0.10 -4.03 9.21 22.41 0.21 -3.83 14 12 C -0.17 -5.37 9.88 22.39 0.22 -5.15 14 13 C 0.21 5.63 6.76 38.24 0.26 5.89 14 14 N -0.86 -14.66 9.09 -51.23 -0.47 -15.12 14 15 C -0.17 -5.35 9.67 22.40 0.22 -5.13 14 16 C -0.01 -0.33 6.34 22.47 0.14 -0.19 14 17 Cl -0.07 -2.80 27.83 -2.72 -0.08 -2.87 14 18 H 0.27 15.01 8.31 -92.71 -0.77 14.24 14 19 H 0.13 5.54 5.02 -2.91 -0.01 5.52 14 20 H 0.15 3.58 8.06 -2.91 -0.02 3.56 14 21 H 0.41 5.12 8.84 -92.71 -0.82 4.30 14 22 H 0.41 5.16 8.84 -92.71 -0.82 4.34 14 23 H 0.15 3.69 8.06 -2.91 -0.02 3.66 14 Total: -1.00 -66.34 236.10 2.51 -63.83 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -0.37 Total: 9.68 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 2.26 Total: -44.65 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -0.18 Total: -68.52 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -1.16 Total: -2.30 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.08 Total: -2.87 kcal Total: -66.34 2.51 -63.83 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037205047.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.203 kcal (2) G-P(sol) polarization free energy of solvation -66.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds