Wall clock time and date at job start Mon Mar 30 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86804 * 120.00185 * 2 1 4 4 H 1.48503 * 109.47050 * 269.99812 * 3 2 1 5 5 H 1.48496 * 109.46987 * 30.00302 * 3 2 1 6 6 H 1.48502 * 109.46753 * 149.99939 * 3 2 1 7 7 C 1.46571 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00343 * 171.60804 * 7 2 1 9 9 C 1.40028 * 119.99679 * 351.61105 * 7 2 1 10 10 C 1.41431 * 120.24579 * 325.19388 * 9 7 2 11 11 C 1.36408 * 119.71240 * 179.74059 * 10 9 7 12 12 F 1.35105 * 119.89449 * 180.23444 * 11 10 9 13 13 C 1.39530 * 120.21884 * 0.50013 * 11 10 9 14 14 F 1.35102 * 119.75484 * 179.75886 * 13 11 10 15 15 C 1.39189 * 120.49952 * 359.47501 * 13 11 10 16 16 C 1.36303 * 120.28337 * 0.28015 * 15 13 11 17 17 N 1.48024 * 120.11396 * 179.97438 * 16 15 13 18 18 O 1.31705 * 119.99912 * 353.84188 * 17 16 15 19 19 O 1.31703 * 119.99740 * 173.84274 * 17 16 15 20 20 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.14018 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.86106 * 180.26034 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 2.4765 2.0464 -1.4001 5 1 1.4264 2.6526 0.7001 6 1 3.5265 1.4400 0.7001 7 6 2.0277 -1.2694 -0.0006 8 1 3.0990 -1.2744 -0.1371 9 6 1.3387 -2.4756 0.1758 10 6 0.2122 -2.5344 1.0289 11 6 -0.4541 -3.7139 1.1887 12 9 -1.5335 -3.7732 1.9990 13 6 -0.0212 -4.8608 0.5223 14 9 -0.6852 -6.0252 0.6911 15 6 1.0861 -4.8131 -0.3198 16 6 1.7640 -3.6441 -0.4982 17 7 2.9414 -3.5977 -1.3941 18 8 3.4092 -4.7086 -1.9249 19 8 3.5212 -2.4456 -1.6604 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1213 -1.6484 1.5486 22 1 1.4097 -5.7061 -0.8338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038337307.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:42 Heat of formation + Delta-G solvation = -64.693136 kcal Electronic energy + Delta-G solvation = -15434.924964 eV Core-core repulsion = 12208.819080 eV Total energy + Delta-G solvation = -3226.105884 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.63733 -47.69896 -38.60549 -36.50409 -34.55600 -32.86331 -30.48057 -30.30116 -26.42727 -24.56789 -22.24858 -21.06730 -18.69652 -17.43902 -17.01762 -16.61970 -15.89591 -15.48863 -15.41215 -14.76949 -14.41432 -14.17471 -13.78978 -13.39397 -12.84539 -12.67190 -12.07344 -11.71418 -11.68933 -11.11379 -10.89495 -10.57584 -10.03405 -9.75406 -9.43436 -9.28062 -8.51680 -8.14454 -7.84575 -5.37181 0.68368 1.87236 2.33603 2.61854 2.66311 2.72535 2.76481 3.32336 3.60606 4.44289 4.70448 5.17408 5.43409 5.85420 5.90041 6.01657 6.26376 6.52920 6.72194 6.79669 7.14179 7.28616 7.51276 7.69304 7.83826 8.43843 8.97721 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.023294 B = 0.012185 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.744581 B = 2297.265531 C = 3419.241248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.053 3.947 3 Si 0.944 3.056 4 H -0.252 1.252 5 H -0.266 1.266 6 H -0.244 1.244 7 C -0.305 4.305 8 H 0.136 0.864 9 C 0.093 3.907 10 C -0.136 4.136 11 C 0.101 3.899 12 F -0.143 7.143 13 C -0.055 4.055 14 F -0.147 7.147 15 C -0.026 4.026 16 C -0.099 4.099 17 N 0.039 4.961 18 O -0.328 6.328 19 O -0.257 6.257 20 H 0.310 0.690 21 H 0.148 0.852 22 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 3.669 3.514 5.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.327 5.327 2 C -0.180 4.180 3 Si 0.764 3.236 4 H -0.176 1.176 5 H -0.190 1.190 6 H -0.167 1.167 7 C -0.331 4.331 8 H 0.153 0.847 9 C 0.088 3.912 10 C -0.156 4.156 11 C 0.081 3.919 12 F -0.122 7.122 13 C -0.078 4.078 14 F -0.126 7.126 15 C -0.046 4.046 16 C -0.200 4.200 17 N 0.468 4.532 18 O -0.479 6.479 19 O -0.424 6.424 20 H 0.124 0.876 21 H 0.166 0.834 22 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.527 3.588 3.680 5.727 hybrid contribution 0.048 0.301 -0.152 0.341 sum -2.479 3.889 3.528 5.806 Atomic orbital electron populations 1.69034 1.09369 1.33390 1.20919 1.28120 0.95096 1.03718 0.91101 0.85657 0.80673 0.76206 0.81075 1.17604 1.19042 1.16721 1.22390 0.98079 0.88296 1.24349 0.84658 1.16935 0.91806 0.91448 0.91022 1.21019 0.97488 0.95843 1.01291 1.17357 0.86634 0.94332 0.93587 1.91432 1.52565 1.97196 1.70959 1.16901 0.99286 0.81703 1.09900 1.91383 1.80009 1.46046 1.95171 1.19895 0.91968 0.97752 0.95006 1.19376 0.96029 0.97410 1.07142 1.49638 1.01760 1.01409 1.00427 1.96115 1.71536 1.19337 1.60870 1.96066 1.62164 1.12946 1.71184 0.87626 0.83420 0.84112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -13.80 11.29 55.99 0.63 -13.17 14 2 C 0.05 1.02 5.42 -15.18 -0.08 0.94 14 3 Si 0.94 14.52 29.65 -169.99 -5.04 9.48 14 4 H -0.25 -3.98 7.11 56.52 0.40 -3.58 14 5 H -0.27 -3.82 7.11 56.52 0.40 -3.42 14 6 H -0.24 -3.77 7.11 56.52 0.40 -3.37 14 7 C -0.31 -6.77 7.85 -35.55 -0.28 -7.05 14 8 H 0.14 3.07 5.87 -52.49 -0.31 2.76 14 9 C 0.09 2.16 5.52 -106.79 -0.59 1.57 14 10 C -0.14 -2.93 8.61 -39.03 -0.34 -3.26 14 11 C 0.10 2.16 7.26 -39.76 -0.29 1.88 14 12 F -0.14 -2.92 17.17 2.25 0.04 -2.88 14 13 C -0.06 -1.19 7.35 -38.75 -0.28 -1.48 14 14 F -0.15 -3.07 17.18 2.25 0.04 -3.03 14 15 C -0.03 -0.58 9.50 -39.92 -0.38 -0.96 14 16 C -0.10 -2.40 6.90 -79.42 -0.55 -2.94 14 17 N 0.04 1.02 4.99 34.22 0.17 1.19 14 18 O -0.33 -8.78 19.15 -31.57 -0.60 -9.39 14 19 O -0.26 -6.75 16.26 -31.57 -0.51 -7.27 14 20 H 0.31 5.18 8.27 -40.82 -0.34 4.84 14 21 H 0.15 3.03 6.66 -52.49 -0.35 2.68 14 22 H 0.14 2.96 7.56 -52.49 -0.40 2.57 14 LS Contribution 223.77 15.07 3.37 3.37 Total: -1.00 -25.63 223.77 -4.88 -30.51 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: -0.19 Total: 2.48 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -2.79 Total: -11.30 kcal Atomic # 7 Polarization: -12.78 SS G_CDS: 0.80 Total: -11.98 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -1.12 Total: -16.65 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 0.08 Total: -5.91 kcal Atomic # 14 Polarization: 14.52 SS G_CDS: -5.04 Total: 9.48 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -25.63 -4.88 -30.51 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038337307.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.181 kcal (2) G-P(sol) polarization free energy of solvation -25.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds