Wall clock time and date at job start Mon Mar 30 2020 03:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29486 * 1 3 3 Si 1.86804 * 120.00185 * 2 1 4 4 H 1.48503 * 109.47050 * 269.99812 * 3 2 1 5 5 H 1.48496 * 109.46987 * 30.00302 * 3 2 1 6 6 H 1.48502 * 109.46753 * 149.99939 * 3 2 1 7 7 C 1.46571 * 119.99945 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00343 * 171.60804 * 7 2 1 9 9 C 1.40028 * 119.99679 * 351.61105 * 7 2 1 10 10 C 1.41431 * 120.24579 * 325.19388 * 9 7 2 11 11 C 1.36408 * 119.71240 * 179.74059 * 10 9 7 12 12 F 1.35105 * 119.89449 * 180.23444 * 11 10 9 13 13 C 1.39530 * 120.21884 * 0.50013 * 11 10 9 14 14 F 1.35102 * 119.75484 * 179.75886 * 13 11 10 15 15 C 1.39189 * 120.49952 * 359.47501 * 13 11 10 16 16 C 1.36303 * 120.28337 * 0.28015 * 15 13 11 17 17 N 1.48024 * 120.11396 * 179.97438 * 16 15 13 18 18 O 1.31705 * 119.99912 * 353.84188 * 17 16 15 19 19 O 1.31703 * 119.99740 * 173.84274 * 17 16 15 20 20 H 0.97004 * 119.99838 * 0.02562 * 1 2 3 21 21 H 1.07999 * 120.14018 * 359.97438 * 10 9 7 22 22 H 1.08000 * 119.86106 * 180.26034 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 2.4765 2.0464 -1.4001 5 1 1.4264 2.6526 0.7001 6 1 3.5265 1.4400 0.7001 7 6 2.0277 -1.2694 -0.0006 8 1 3.0990 -1.2744 -0.1371 9 6 1.3387 -2.4756 0.1758 10 6 0.2122 -2.5344 1.0289 11 6 -0.4541 -3.7139 1.1887 12 9 -1.5335 -3.7732 1.9990 13 6 -0.0212 -4.8608 0.5223 14 9 -0.6852 -6.0252 0.6911 15 6 1.0861 -4.8131 -0.3198 16 6 1.7640 -3.6441 -0.4982 17 7 2.9414 -3.5977 -1.3941 18 8 3.4092 -4.7086 -1.9249 19 8 3.5212 -2.4456 -1.6604 20 1 -0.4850 0.8401 -0.0004 21 1 -0.1213 -1.6484 1.5486 22 1 1.4097 -5.7061 -0.8338 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038337307.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:42 Heat of formation + Delta-G solvation = -78.046361 kcal Electronic energy + Delta-G solvation = -15435.504003 eV Core-core repulsion = 12208.819080 eV Total energy + Delta-G solvation = -3226.684923 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 229.034 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.33648 -49.41738 -40.38029 -38.27492 -36.25770 -34.67364 -32.25584 -32.06287 -28.23750 -26.36528 -23.98962 -22.83663 -20.41204 -19.21873 -18.80308 -18.33274 -17.58443 -17.20329 -17.05393 -16.44995 -16.22419 -15.88630 -15.45888 -14.95525 -14.54422 -14.26823 -13.74883 -13.44529 -13.18390 -12.73802 -12.46531 -11.97149 -11.61466 -11.51659 -11.31483 -11.18575 -10.29082 -9.89211 -9.46406 -7.18064 -1.21455 0.16810 0.54298 1.00672 1.31123 1.36986 1.54624 2.04158 2.08275 2.67629 2.95025 3.41884 3.69276 4.10763 4.14442 4.35856 4.51180 4.77641 4.93085 5.03156 5.36565 5.52274 5.75988 5.85350 6.05096 6.60840 7.41987 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.023294 B = 0.012185 C = 0.008187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.744581 B = 2297.265531 C = 3419.241248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.702 5.702 2 C 0.020 3.980 3 Si 1.009 2.991 4 H -0.258 1.258 5 H -0.237 1.237 6 H -0.247 1.247 7 C -0.260 4.260 8 H 0.129 0.871 9 C 0.046 3.954 10 C -0.108 4.108 11 C 0.088 3.912 12 F -0.134 7.134 13 C -0.027 4.027 14 F -0.139 7.139 15 C -0.043 4.043 16 C -0.096 4.096 17 N 0.038 4.962 18 O -0.403 6.403 19 O -0.317 6.317 20 H 0.334 0.666 21 H 0.163 0.837 22 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.791 6.300 5.138 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.323 5.323 2 C -0.213 4.213 3 Si 0.824 3.176 4 H -0.182 1.182 5 H -0.160 1.160 6 H -0.170 1.170 7 C -0.287 4.287 8 H 0.147 0.853 9 C 0.041 3.959 10 C -0.128 4.128 11 C 0.068 3.932 12 F -0.113 7.113 13 C -0.051 4.051 14 F -0.119 7.119 15 C -0.063 4.063 16 C -0.203 4.203 17 N 0.439 4.561 18 O -0.533 6.533 19 O -0.466 6.466 20 H 0.149 0.851 21 H 0.180 0.820 22 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -4.176 6.153 5.183 9.064 hybrid contribution 0.206 -0.217 -0.371 0.476 sum -3.970 5.936 4.813 8.611 Atomic orbital electron populations 1.68937 1.10189 1.36075 1.17071 1.28945 0.95954 1.05320 0.91084 0.84758 0.79595 0.72343 0.80899 1.18212 1.15952 1.16975 1.22979 0.98293 0.89731 1.17731 0.85310 1.17202 0.93628 0.91747 0.93368 1.21089 0.95672 0.96265 0.99801 1.17245 0.87384 0.94126 0.94485 1.91455 1.52017 1.97139 1.70687 1.16985 0.98108 0.81932 1.08034 1.91408 1.79704 1.45808 1.94931 1.19929 0.92555 0.97753 0.96046 1.19666 0.95325 0.98338 1.06982 1.49611 1.03076 1.00911 1.02498 1.96054 1.73429 1.19722 1.64130 1.95978 1.63541 1.13211 1.73872 0.85095 0.81959 0.83743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -24.34 11.29 23.22 0.26 -24.08 14 2 C 0.02 0.69 5.42 87.21 0.47 1.16 14 3 Si 1.01 26.12 29.65 68.60 2.03 28.16 14 4 H -0.26 -7.02 7.11 99.48 0.71 -6.32 14 5 H -0.24 -5.14 7.11 99.48 0.71 -4.43 14 6 H -0.25 -6.54 7.11 99.48 0.71 -5.83 14 7 C -0.26 -11.13 7.85 24.88 0.20 -10.93 14 8 H 0.13 5.78 5.87 -2.91 -0.02 5.77 14 9 C 0.05 2.08 5.52 -21.27 -0.12 1.97 14 10 C -0.11 -4.36 8.61 22.63 0.19 -4.17 14 11 C 0.09 3.55 7.26 22.15 0.16 3.71 14 12 F -0.13 -5.07 17.17 44.97 0.77 -4.30 14 13 C -0.03 -1.13 7.35 22.81 0.17 -0.96 14 14 F -0.14 -5.57 17.18 44.97 0.77 -4.79 14 15 C -0.04 -1.92 9.50 22.05 0.21 -1.71 14 16 C -0.10 -4.74 6.90 36.71 0.25 -4.49 14 17 N 0.04 2.08 4.99 -45.65 -0.23 1.85 14 18 O -0.40 -23.28 19.15 3.50 0.07 -23.21 14 19 O -0.32 -17.56 16.26 3.51 0.06 -17.51 14 20 H 0.33 9.37 8.27 -92.71 -0.77 8.61 14 21 H 0.16 6.02 6.66 -2.91 -0.02 6.00 14 22 H 0.14 6.30 7.56 -2.91 -0.02 6.28 14 Total: -1.00 -55.80 223.77 6.57 -49.23 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.30 Total: 10.07 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 1.54 Total: -15.42 kcal Atomic # 7 Polarization: -22.26 SS G_CDS: 0.03 Total: -22.23 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: 0.12 Total: -40.72 kcal Atomic # 9 Polarization: -10.63 SS G_CDS: 1.54 Total: -9.09 kcal Atomic # 14 Polarization: 26.12 SS G_CDS: 2.03 Total: 28.16 kcal Total: -55.80 6.57 -49.23 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038337307.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.818 kcal (2) G-P(sol) polarization free energy of solvation -55.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds