Wall clock time and date at job start Mon Mar 30 2020 03:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46976 * 2 1 4 4 H 1.09006 * 109.47210 * 178.12471 * 3 2 1 5 5 C 1.50702 * 109.47165 * 58.12593 * 3 2 1 6 6 H 1.08000 * 119.99847 * 275.41424 * 5 3 2 7 7 C 1.37876 * 119.99970 * 95.41137 * 5 3 2 8 8 N 1.31513 * 120.00007 * 187.92878 * 7 5 3 9 9 Si 1.86803 * 119.99879 * 7.92823 * 7 5 3 10 10 H 1.48498 * 109.47055 * 84.89439 * 9 7 5 11 11 H 1.48504 * 109.47159 * 204.89453 * 9 7 5 12 12 H 1.48498 * 109.47348 * 324.89315 * 9 7 5 13 13 S 1.80998 * 109.47429 * 298.12776 * 3 2 1 14 14 C 1.76204 * 99.99862 * 287.91886 * 13 3 2 15 15 N 1.29761 * 124.95179 * 174.16029 * 14 13 3 16 16 C 1.32099 * 116.85323 * 179.97438 * 15 14 13 17 17 C 1.33337 * 114.58549 * 359.97438 * 16 15 14 18 18 S 1.70969 * 124.95344 * 353.84607 * 14 13 3 19 19 H 1.09004 * 109.47028 * 303.92595 * 1 2 3 20 20 H 1.08997 * 109.47527 * 63.92419 * 1 2 3 21 21 H 1.09002 * 109.46768 * 183.93029 * 1 2 3 22 22 H 1.09002 * 109.47300 * 240.00541 * 2 1 3 23 23 H 1.08994 * 109.47687 * 120.00070 * 2 1 3 24 24 H 0.97005 * 119.99548 * 180.02562 * 8 7 5 25 25 H 1.08000 * 122.70790 * 180.02562 * 16 15 14 26 26 H 1.08005 * 125.94394 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1295 1.4427 0.0336 5 6 1.5000 2.1662 1.2066 6 1 0.5186 2.6158 1.1722 7 6 2.2588 2.2543 2.3544 8 7 1.7324 2.7461 3.4546 9 14 4.0347 1.6749 2.3466 10 1 4.9098 2.7679 1.8519 11 1 4.4399 1.3023 3.7259 12 1 4.1663 0.4939 1.4561 13 16 1.4826 2.2796 -1.5049 14 6 2.5143 1.4891 -2.6946 15 7 2.4343 1.6598 -3.9785 16 6 3.2906 0.9853 -4.7247 17 6 4.1323 0.2102 -4.0402 18 16 3.7719 0.3912 -2.3254 19 1 -0.3633 0.5736 0.8528 20 1 -0.3634 0.4517 -0.9230 21 1 -0.3633 -1.0253 0.0704 22 1 1.8933 -0.5137 -0.8900 23 1 1.8934 -0.5138 0.8899 24 1 2.2664 2.8084 4.2620 25 1 3.3080 1.0566 -5.8022 26 1 4.9031 -0.4170 -4.4633 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040676808.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:36 Heat of formation + Delta-G solvation = 30.826380 kcal Electronic energy + Delta-G solvation = -11797.480564 eV Core-core repulsion = 9707.943070 eV Total energy + Delta-G solvation = -2089.537495 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 229.029 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.95683 -35.07677 -32.21145 -30.00206 -27.79929 -25.30011 -23.74078 -20.73368 -19.97343 -18.45147 -17.04240 -16.01355 -15.11683 -14.38268 -14.25574 -13.85715 -13.57821 -13.17807 -12.88210 -12.67916 -11.29874 -11.21628 -11.10467 -10.98306 -10.63985 -10.45433 -10.07554 -9.71393 -9.51924 -9.47045 -8.96200 -8.87499 -8.76576 -6.85305 -6.47086 -4.45818 0.99146 1.56545 1.87795 2.19424 3.07695 3.12424 3.16128 3.18817 3.39738 4.10550 4.91534 4.98392 5.39180 5.77429 5.79476 5.95793 6.01428 6.33598 6.46624 6.64532 6.68181 6.91036 7.14407 7.26236 7.97365 8.03041 8.56622 9.09126 10.62401 Molecular weight = 229.03amu Principal moments of inertia in cm(-1) A = 0.034766 B = 0.010427 C = 0.009347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.184209 B = 2684.636843 C = 2994.938684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.029 3.971 4 H 0.059 0.941 5 C -0.485 4.485 6 H 0.091 0.909 7 C 0.090 3.910 8 N -0.867 5.867 9 Si 0.865 3.135 10 H -0.267 1.267 11 H -0.279 1.279 12 H -0.258 1.258 13 S -0.035 6.035 14 C 0.044 3.956 15 N -0.484 5.484 16 C 0.053 3.947 17 C -0.293 4.293 18 S 0.116 5.884 19 H 0.073 0.927 20 H 0.053 0.947 21 H 0.035 0.965 22 H 0.037 0.963 23 H 0.066 0.934 24 H 0.274 0.726 25 H 0.170 0.830 26 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 -5.911 -8.813 11.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.099 4.099 4 H 0.077 0.923 5 C -0.529 4.529 6 H 0.109 0.891 7 C -0.119 4.119 8 N -0.501 5.501 9 Si 0.690 3.310 10 H -0.192 1.192 11 H -0.205 1.205 12 H -0.182 1.182 13 S 0.205 5.795 14 C -0.340 4.340 15 N -0.204 5.204 16 C -0.101 4.101 17 C -0.437 4.437 18 S 0.365 5.635 19 H 0.092 0.908 20 H 0.072 0.928 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.187 0.813 26 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 3.492 -4.986 -8.046 10.089 hybrid contribution 2.061 -1.171 -0.835 2.513 sum 5.554 -6.157 -8.880 12.150 Atomic orbital electron populations 1.21734 0.95316 0.99907 1.03063 1.21936 0.97499 0.96081 0.99931 1.21858 0.99221 0.95476 0.93305 0.92310 1.20370 1.04453 1.35415 0.92620 0.89145 1.24979 0.98164 0.93746 0.95005 1.69844 1.37041 1.42225 1.01000 0.86988 0.85239 0.80497 0.78280 1.19179 1.20468 1.18249 1.86228 1.46241 1.49346 0.97646 1.29355 1.02778 1.02647 0.99254 1.66803 1.25894 1.25684 1.02020 1.21789 0.92496 0.94757 1.01055 1.26818 1.09414 1.11144 0.96328 1.84292 1.29949 1.42318 1.06946 0.90773 0.92810 0.94568 0.94415 0.91527 0.91595 0.81297 0.81268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.43 37.16 0.35 -2.36 15 2 C -0.11 -2.27 5.46 -26.73 -0.15 -2.42 15 3 C 0.03 0.65 1.51 -27.88 -0.04 0.61 15 4 H 0.06 1.32 4.19 -51.91 -0.22 1.10 15 5 C -0.49 -12.32 7.51 -34.44 -0.26 -12.58 15 6 H 0.09 2.50 7.90 -52.49 -0.41 2.08 15 7 C 0.09 2.34 5.47 -17.82 -0.10 2.24 15 8 N -0.87 -23.88 13.96 55.43 0.77 -23.10 15 9 Si 0.86 19.43 27.09 -169.99 -4.60 14.82 15 10 H -0.27 -5.98 7.11 56.52 0.40 -5.58 15 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 15 12 H -0.26 -5.49 6.69 56.52 0.38 -5.11 15 13 S -0.04 -0.75 20.39 -107.50 -2.19 -2.95 15 14 C 0.04 0.88 7.32 51.89 0.38 1.26 15 15 N -0.48 -9.31 10.61 -14.78 -0.16 -9.47 15 16 C 0.05 0.82 11.34 -19.15 -0.22 0.60 15 17 C -0.29 -4.22 11.34 29.02 0.33 -3.89 15 18 S 0.12 2.00 19.43 -107.50 -2.09 -0.08 15 19 H 0.07 1.54 6.91 -51.93 -0.36 1.18 15 20 H 0.05 1.01 7.15 -51.93 -0.37 0.64 15 21 H 0.04 0.59 8.14 -51.93 -0.42 0.17 15 22 H 0.04 0.70 6.06 -51.93 -0.31 0.39 15 23 H 0.07 1.34 8.14 -51.93 -0.42 0.91 15 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 25 H 0.17 2.00 8.06 -52.49 -0.42 1.58 15 26 H 0.17 1.83 8.06 -52.48 -0.42 1.41 15 LS Contribution 244.66 15.07 3.69 3.69 Total: -1.00 -27.15 244.66 -6.81 -33.96 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -2.53 Total: -0.32 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 0.30 Total: -16.55 kcal Atomic # 7 Polarization: -33.19 SS G_CDS: 0.62 Total: -32.57 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.60 Total: 14.82 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -4.28 Total: -3.03 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.15 -6.81 -33.96 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040676808.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.788 kcal (2) G-P(sol) polarization free energy of solvation -27.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds